vOTU vOTU-049439

vOTU: vOTU-049439

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-049439
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00316 → vGENUS-00408 → vSUBGEN-19043 → vOTU-049439
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0239249
Biosample ID	N/A
Genome length (bp)	34,055 bps
CheckV completeness	100.00% (Complete)
CDS count	57
CDS density	92.63%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	274	Host agreement	94.53
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger qucibialis	Total connections	337	Host agreement	97.03

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0239249_2	UniRef90_A0A1Q6T359	122.0	1.4e-31	N/A	N/A
eggNOG-mapper	UHGV-0239249_2	411471.SUBVAR_05869	73.2	0.000000000000212	repeat protein	N/A
COG	UHGV-0239249_2	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
KOfam	UHGV-0239249_3	K07497	135.1	8.4e-40	K07497; putative transposase	N/A
PHROG	UHGV-0239249_3	phrog_157	236.9	0	transposase	integration and excision
UniRef90	UHGV-0239249_3	UniRef90_R0BIS6	464.0	0	Integrase catalytic domain-containing protein	N/A
eggNOG-mapper	UHGV-0239249_3	290402.Cbei_0719	368.0	0	hmm pf00665	N/A
Pfam	UHGV-0239249_3	PF13276	N/A	N/A	HTH-like domain	HTH_21
Pfam	UHGV-0239249_3	PF00665	N/A	N/A	Integrase core domain	rve
Pfam	UHGV-0239249_3	PF13333	N/A	N/A	Integrase core domain	rve_2
NCBIFam	UHGV-0239249_3	NF033516.0	N/A	N/A	IS3 family transposase	N/A
COG	UHGV-0239249_3	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-0239249_3	PF00665,PF13276,NF033516,COG2801	N/A	N/A	N/A	N/A
KOfam	UHGV-0239249_4	K07483	53.3	3.5e-30	K07483; transposase	N/A
PHROG	UHGV-0239249_4	phrog_151	123.5	3.50044e-42	transposase	integration and excision
UniRef90	UHGV-0239249_4	UniRef90_A0A6N9JWD3	385.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0239249_4	1378168.N510_03239	351.0	0	Transposase	N/A
Pfam	UHGV-0239249_4	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
Pfam	UHGV-0239249_4	PF13518	N/A	N/A	Helix-turn-helix domain	HTH_28
COG	UHGV-0239249_4	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0239249_4	PF13518,PF13011,PF01527,NF038385,NF006928,COG3415	N/A	N/A	N/A	N/A
PHROG	UHGV-0239249_5	phrog_38135	72.9	4.1e-21	N/A	unknown function
UniRef90	UHGV-0239249_5	UniRef90_A0A1C6NRC5	52.8	0.000000328	N/A	N/A
eggNOG-mapper	UHGV-0239249_5	1469948.JPNB01000001_gene2385	63.5	0.00000000000808	belongs to the thioredoxin family	N/A
Pfam	UHGV-0239249_5	PF14020	N/A	N/A	N/A	DUF4236
COG	UHGV-0239249_5	COG3118	N/A	N/A	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	N/A
KOfam	UHGV-0239249_6	K01356	145.1	7.90332e-43	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0239249_6	phrog_4	117.8	1.3e-34	transcriptional repressor	transcription regulation
UniRef90	UHGV-0239249_6	UniRef90_A0A1Q6T3E1	294.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0239249_6	411483.FAEPRAA2165_03041	171.0	0	N/A	N/A
Pfam	UHGV-0239249_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0239249_6	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0239249_6	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0239249_6	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-0239249_7	K22300	44.9	0.0000000000024	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0239249_7	phrog_8	44.8	0.0000000000029	transcriptional regulator	transcription regulation
UniRef90	UHGV-0239249_7	UniRef90_A0A367GFH2	104.0	4.05e-28	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0239249_7	796942.HMPREF9623_01770	57.8	0.00000000608	N/A	N/A
Pfam	UHGV-0239249_7	PF07022	N/A	N/A	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
COG	UHGV-0239249_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0239249_7	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0239249_20	phrog_3584	206.4	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0239249_20	UniRef90_UPI001C02C5E0	157.0	4.80645e-43	N/A	N/A
eggNOG-mapper	UHGV-0239249_20	718252.FP2_16510	145.0	4.32e-39	N/A	N/A
structural_annotation	UHGV-0239249_20	PF01446	N/A	N/A	N/A	N/A
PHROG	UHGV-0239249_21	phrog_36399	50.4	0.000000000000048	N/A	unknown function
eggNOG-mapper	UHGV-0239249_26	693746.OBV_18010	79.3	1.64e-16	N/A	N/A
structural_annotation	UHGV-0239249_26	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0239249_27	phrog_338	60.5	3.6e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0239249_27	UniRef90_UPI0015F33F36	171.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0239249_27	748224.HMPREF9436_01465	172.0	0	N/A	N/A
PHROG	UHGV-0239249_28	phrog_1066	57.9	1.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-0239249_28	445975.COLSTE_02166	76.6	5.61e-16	N/A	N/A
AcrCatalog	UHGV-0239249_28	cluster_154855	70.9	3.77e-18	NA	N/A
PHROG	UHGV-0239249_29	phrog_9	133.9	1.4e-39	terminase large subunit	head and packaging
UniRef90	UHGV-0239249_29	UniRef90_UPI001D0087E2	453.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0239249_29	1410630.JNKP01000001_gene1822	635.0	0	phage terminase, large subunit	N/A
COG	UHGV-0239249_29	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0239249_29	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0239249_30	phrog_104	208.5	0	portal protein	head and packaging
UniRef90	UHGV-0239249_30	UniRef90_A0A3E2U200	743.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0239249_30	748224.HMPREF9436_01468	758.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0239249_30	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0239249_30	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0239249_31	phrog_29609	140.7	3.39955e-42	N/A	unknown function
UniRef90	UHGV-0239249_31	UniRef90_A0A6N8H118	348.0	0	CdiA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0239249_31	748224.HMPREF9436_01469	389.0	0	N/A	N/A
Pfam	UHGV-0239249_31	PF18810	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
COG	UHGV-0239249_31	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
PHROG	UHGV-0239249_33	phrog_194	83.5	3.3e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-0239249_33	UniRef90_D4K444	154.0	1.82169e-44	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0239249_33	748224.HMPREF9436_03336	158.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0239249_33	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0239249_33	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0239249_34	phrog_10	139.9	2.4e-41	major head protein	head and packaging
UniRef90	UHGV-0239249_34	UniRef90_A0A1Y4TJU9	514.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0239249_34	748224.HMPREF9436_00690	444.0	0	Phage capsid family	N/A
Pfam	UHGV-0239249_34	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0239249_34	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0239249_34	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0239249_34	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0239249_36	phrog_137	53.0	0.0000000000000042	head-tail adaptor Ad1	connector
UniRef90	UHGV-0239249_36	UniRef90_E2ZGA8	161.0	0	Phage protein Gp19/Gp15/Gp42	N/A
structural_annotation	UHGV-0239249_36	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-0239249_37	phrog_501	69.8	4.1e-20	head closure Hc1	connector
eggNOG-mapper	UHGV-0239249_37	748224.HMPREF9436_00693	169.0	0	N/A	N/A
structural_annotation	UHGV-0239249_37	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0239249_38	phrog_387	68.0	1.2e-19	neck protein	connector
UniRef90	UHGV-0239249_38	UniRef90_A0A380KNT4	74.7	5.34e-16	N/A	N/A
eggNOG-mapper	UHGV-0239249_38	1121864.OMO_02156	76.3	2.15e-17	N/A	N/A
PHROG	UHGV-0239249_39	phrog_123	70.8	2.2e-20	tail terminator	connector
UniRef90	UHGV-0239249_39	UniRef90_A0A139NAV0	117.0	6.14e-32	Phage-associated protein	N/A
eggNOG-mapper	UHGV-0239249_39	1280698.AUJS01000007_gene1043	122.0	1.54e-34	N/A	N/A
structural_annotation	UHGV-0239249_39	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-0239249_40	phrog_117	181.7	0	major tail protein	tail
UniRef90	UHGV-0239249_40	UniRef90_A0A1Y4TGT6	271.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0239249_40	1121864.OMO_02158	243.0	0	domain, Protein	N/A
COG	UHGV-0239249_40	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0239249_40	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0239249_41	phrog_1526	67.6	1.8e-19	N/A	unknown function
eggNOG-mapper	UHGV-0239249_41	1423775.BAMN01000011_gene597	59.7	0.000000000132	N/A	N/A
PHROG	UHGV-0239249_42	phrog_1633	139.3	1.19993e-41	N/A	unknown function
UniRef90	UHGV-0239249_42	UniRef90_UPI001939D555	112.0	1.64e-29	N/A	N/A
eggNOG-mapper	UHGV-0239249_42	883110.HMPREF9260_00651	107.0	2.37e-28	N/A	N/A
Pfam	UHGV-0239249_42	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-0239249_42	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-0239249_43	phrog_6900	259.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0239249_43	UniRef90_UPI001CC012E9	294.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0239249_43	1121864.OMO_02161	327.0	0	tape measure	N/A
COG	UHGV-0239249_43	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0239249_43	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0239249_44	phrog_1194	42.2	0.000000000012	N/A	unknown function
eggNOG-mapper	UHGV-0239249_44	411471.SUBVAR_06933	101.0	4.72e-26	N/A	N/A
structural_annotation	UHGV-0239249_44	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0239249_45	phrog_18190	88.2	1e-33	N/A	unknown function
eggNOG-mapper	UHGV-0239249_45	411471.SUBVAR_06932	312.0	0	N/A	N/A
structural_annotation	UHGV-0239249_45	PF05954,PF00629,PF03424,NF033848,NF033675,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0239249_46	phrog_18444	80.6	1.2e-23	N/A	unknown function
UniRef90	UHGV-0239249_46	UniRef90_UPI00156E9A45	59.7	0.000000000177	peptide chain release factor 2	N/A
eggNOG-mapper	UHGV-0239249_46	1294142.CINTURNW_1707	60.8	0.0000000000104	N/A	N/A
structural_annotation	UHGV-0239249_48	PF12245	N/A	N/A	N/A	N/A
PHROG	UHGV-0239249_49	phrog_31538	48.1	0.00000000000023	N/A	unknown function
eggNOG-mapper	UHGV-0239249_49	428125.CLOLEP_01433	55.8	0.00000000649	N/A	N/A
PHROG	UHGV-0239249_50	phrog_13589	189.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0239249_50	742733.HMPREF9469_05009	234.0	0	N/A	N/A
PHROG	UHGV-0239249_52	phrog_19111	54.6	1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0239249_52	1121335.Clst_0408	76.3	0.00000000000161	ATPase involved in DNA repair	N/A
COG	UHGV-0239249_52	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
PHROG	UHGV-0239249_53	phrog_24267	58.5	1.6e-16	N/A	unknown function
eggNOG-mapper	UHGV-0239249_53	508419.F8J176_9CAUD	113.0	4.33e-25	peptidoglycan catabolic process	N/A
Pfam	UHGV-0239249_53	PF11133	N/A	N/A	Head fiber protein	Phage_head_fibr
Pfam	UHGV-0239249_53	PF03406	N/A	N/A	Phage tail fibre repeat	Phage_fiber_2
KOfam	UHGV-0239249_54	K07273	181.2	0	acm; lysozyme	N/A
PHROG	UHGV-0239249_54	phrog_291	154.0	1.4013e-45	endolysin	lysis
UniRef90	UHGV-0239249_54	UniRef90_A0A367G061	513.0	0	Peptidase_M23 domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0239249_54	411471.SUBVAR_06927	308.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0239249_54	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0239249_54	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0239249_54	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0239249_54	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0239249_55	phrog_1863	75.9	3.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0239249_55	693746.OBV_18260	114.0	3.86e-32	N/A	N/A
PHROG	UHGV-0239249_56	phrog_1129	62.2	6.8e-18	holin	lysis
UniRef90	UHGV-0239249_56	UniRef90_A0A367FT42	171.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0239249_56	1007096.BAGW01000036_gene2663	112.0	2.73e-31	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0239249_56	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0239249_56	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0239249_57	K06400	368.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0239249_57	phrog_95	372.6	0	integrase	integration and excision
UniRef90	UHGV-0239249_57	UniRef90_UPI001D0F283A	617.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0239249_57	718252.FP2_01160	594.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0239249_57	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0239249_57	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0239249_57	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0239249_57	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0239249_57	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0239249	Yes	34,055	57	100	1
UHGV-0127872	No	12,325	58	35	1