vOTU vOTU-049504

vOTU: vOTU-049504

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-049504
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-01074 → vGENUS-01200 → vSUBGEN-40078 → vOTU-049504
Host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → Phil1 → Phil1 sp001940855
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0243473
Biosample ID	SAMN13509405
Genome length (bp)	38,644 bps
CheckV completeness	100.00% (Complete)
CDS count	67
CDS density	94.07%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → Phil1 → Phil1 sp001940855	Total connections	1273	Host agreement	97.56
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → Phil1 → Phil1 sp001940855	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
Pfam	UHGV-0243473_4	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0243473_4	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
Pfam	UHGV-0243473_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
UniRef90	UHGV-0243473_7	UniRef90_UPI0018E38DB7	68.6	0.0000000000000741	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0243473_7	1111454.HMPREF1250_1029	65.5	0.000000000000216	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0243473_7	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0243473_7	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0243473_8	K22300	57.5	2.9e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0243473_8	phrog_8	65.1	1.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0243473_8	UniRef90_UPI001C02C327	83.6	1.97e-18	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0243473_8	1035196.HMPREF9998_01314	59.3	0.000000000285	N/A	N/A
PADLOC	UHGV-0243473_8	retron_type_VI_hth_cluster2_1	53.3	0.0000000000000075	N/A	Retron
Pfam	UHGV-0243473_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0243473_8	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0243473_8	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0243473_9	PF13560,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0243473_10	K02342	201.9	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0243473_10	phrog_192	178.7	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0243473_10	UniRef90_UPI0009BC4B95	301.0	0	exonuclease	N/A
eggNOG-mapper	UHGV-0243473_10	1123288.SOV_2c03960	281.0	0	DNA polymerase III	N/A
PADLOC	UHGV-0243473_10	cd06127	140.5	1.40004e-41	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0243473_10	PF00929	N/A	N/A	Exonuclease	RNase_T
NCBIFam	UHGV-0243473_10	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0243473_10	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0243473_10	PF00929,PF00533,MF_00157,NF005289,COG0847	N/A	N/A	N/A	N/A
KOfam	UHGV-0243473_11	K14059	231.8	0	int; integrase	N/A
PHROG	UHGV-0243473_11	phrog_1	201.5	0	integrase	integration and excision
UniRef90	UHGV-0243473_11	UniRef90_UPI001C0F402D	167.0	1.54143e-44	site-specific integrase	N/A
eggNOG-mapper	UHGV-0243473_11	1408437.JNJN01000039_gene380	139.0	1.62e-34	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0243473_11	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0243473_11	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0243473_11	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0243473_11	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0243473_13	1408437.JNJN01000043_gene802	144.0	5.60519e-43	N/A	N/A
PHROG	UHGV-0243473_14	phrog_16490	52.1	0.000000000000014	N/A	unknown function
PHROG	UHGV-0243473_15	phrog_21718	45.4	0.00000000000068	N/A	unknown function
eggNOG-mapper	UHGV-0243473_15	476272.RUMHYD_01768	53.9	0.000000428	N/A	N/A
PHROG	UHGV-0243473_16	phrog_16123	83.4	4e-26	N/A	unknown function
eggNOG-mapper	UHGV-0243473_16	1064535.MELS_1123	97.1	7.75e-24	N/A	N/A
eggNOG-mapper	UHGV-0243473_20	1384065.JAGS01000001_gene3279	53.1	0.00000183	Plasmid pRiA4b ORF-3-like protein	N/A
Pfam	UHGV-0243473_20	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-0243473_20	PF13384,NF040595	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0243473_22	394503.Ccel_1297	57.8	0.00000000107	N/A	N/A
UniRef90	UHGV-0243473_23	UniRef90_UPI001E4D989F	52.4	0.00000137	CTP synthase	N/A
eggNOG-mapper	UHGV-0243473_23	552396.HMPREF0863_01650	52.8	0.000000142	N/A	N/A
KOfam	UHGV-0243473_24	K19303	62.2	1.2e-17	mepH; murein DD-endopeptidase [EC:3.4.-.-]	N/A
PHROG	UHGV-0243473_24	phrog_329	51.1	0.0000000000000026	minor tail protein	tail
UniRef90	UHGV-0243473_24	UniRef90_A0A2V2EEK9	213.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0243473_24	755731.Clo1100_1179	92.0	8.29e-20	cysteine-type peptidase activity	N/A
Pfam	UHGV-0243473_24	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0243473_24	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0243473_24	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0243473_24	PF00877,PF01471,NF033743,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0243473_30	phrog_18190	149.4	0	N/A	unknown function
UniRef90	UHGV-0243473_30	UniRef90_UPI00143A35E2	219.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0243473_30	1449050.JNLE01000003_gene3879	184.0	0	N/A	N/A
Pfam	UHGV-0243473_30	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
PHROG	UHGV-0243473_31	phrog_1194	72.9	4.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0243473_31	742733.HMPREF9469_01808	115.0	1.73e-31	N/A	N/A
Pfam	UHGV-0243473_31	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0243473_31	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0243473_32	phrog_1535	135.0	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0243473_32	1235797.C816_04182	165.0	1.08e-39	SLT domain	N/A
COG	UHGV-0243473_32	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0243473_32	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0243473_33	phrog_706	118.3	6.6e-35	N/A	unknown function
UniRef90	UHGV-0243473_33	UniRef90_A0A2U1BEN4	160.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0243473_33	476272.RUMHYD_01784	162.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0243473_33	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0243473_33	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0243473_34	phrog_11299	82.5	5.9e-24	N/A	unknown function
eggNOG-mapper	UHGV-0243473_34	1298920.KI911353_gene2067	58.2	0.0000000117	N/A	N/A
structural_annotation	UHGV-0243473_34	PF10666	N/A	N/A	N/A	N/A
COG	UHGV-0243473_35	COG4886	N/A	N/A	Leucine-rich repeat (LRR) protein	N/A
UniRef90	UHGV-0243473_36	UniRef90_UPI000C077B54	56.2	0.00000145	N/A	N/A
eggNOG-mapper	UHGV-0243473_36	1405498.SSIM_01370	55.8	0.000000653	N/A	N/A
Pfam	UHGV-0243473_36	PF16729	N/A	N/A	N/A	DUF5067
COG	UHGV-0243473_36	COG3170	N/A	N/A	Type IV pilus assembly protein FimV	N/A
structural_annotation	UHGV-0243473_36	PF16729,PF12773,MF_00791,TIGR04087,COG2967	N/A	N/A	N/A	N/A
PHROG	UHGV-0243473_37	phrog_3099	67.1	3.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-0243473_37	1160721.RBI_II00532	80.1	1.57e-16	N/A	N/A
structural_annotation	UHGV-0243473_37	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0243473_38	phrog_3266	77.2	1.7e-22	tail completion	connector
eggNOG-mapper	UHGV-0243473_38	1280692.AUJL01000004_gene841	68.6	0.00000000000111	N/A	N/A
structural_annotation	UHGV-0243473_38	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0243473_39	phrog_556	87.8	9.3e-26	minor head protein	head and packaging
UniRef90	UHGV-0243473_39	UniRef90_UPI001958E7C1	154.0	2.8026e-45	minor capsid protein	N/A
eggNOG-mapper	UHGV-0243473_39	665956.HMPREF1032_03062	144.0	3.53968e-42	Minor capsid protein	N/A
Pfam	UHGV-0243473_39	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0243473_39	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0243473_40	phrog_3366	71.6	9.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-0243473_40	411470.RUMGNA_02221	58.5	0.00000000165	N/A	N/A
Pfam	UHGV-0243473_40	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0243473_40	PF20536,TIGR01563,COG1853	N/A	N/A	N/A	N/A
PHROG	UHGV-0243473_41	phrog_541	52.5	0.0000000000000083	head-tail adaptor	connector
PHROG	UHGV-0243473_42	phrog_10	157.4	0	major head protein	head and packaging
UniRef90	UHGV-0243473_42	UniRef90_UPI00040DB95C	489.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0243473_42	1120998.AUFC01000030_gene2236	489.0	0	Phage capsid family	N/A
Pfam	UHGV-0243473_42	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0243473_42	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0243473_42	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0243473_42	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0243473_43	phrog_2303	56.0	7.1e-16	head scaffolding protein	head and packaging
UniRef90	UHGV-0243473_43	UniRef90_A0A1V6AXQ8	54.7	0.00000679	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0243473_43	1007103.AFHW01000034_gene2056	54.7	0.00000143	N/A	N/A
Pfam	UHGV-0243473_43	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0243473_44	phrog_581	333.0	0	minor head protein	head and packaging
UniRef90	UHGV-0243473_44	UniRef90_A0A417EY47	359.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0243473_44	645991.Sgly_0338	345.0	0	N/A	N/A
Pfam	UHGV-0243473_44	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0243473_44	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0243473_44	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0243473_45	phrog_533	368.3	0	portal protein	head and packaging
UniRef90	UHGV-0243473_45	UniRef90_UPI000412491D	538.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0243473_45	1120998.AUFC01000030_gene2232	537.0	0	N/A	N/A
Pfam	UHGV-0243473_45	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0243473_45	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0243473_46	K06909	98.4	7.2e-29	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0243473_46	phrog_2	70.8	2.8e-20	terminase large subunit	head and packaging
UniRef90	UHGV-0243473_46	UniRef90_UPI001412C9CB	525.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0243473_46	1292035.H476_1019	392.0	0	Phage terminase large subunit	N/A
COG	UHGV-0243473_46	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0243473_46	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0243473_47	phrog_309	132.7	1.2e-39	terminase small subunit	head and packaging
UniRef90	UHGV-0243473_47	UniRef90_A0A8J6P944	138.0	4.9e-40	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0243473_47	226185.EF_2018	114.0	4.86e-31	transposase activity	N/A
COG	UHGV-0243473_47	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0243473_47	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0243473_48	K21527	146.4	8.12753e-44	mom; adenine modification enzyme [EC:2.3.1.-]	N/A
PHROG	UHGV-0243473_48	phrog_1384	170.3	0	Mom-like DNA modification protein	other
UniRef90	UHGV-0243473_48	UniRef90_F0SQP3	265.0	0	Phage DNA modification protein	N/A
eggNOG-mapper	UHGV-0243473_48	1122981.AUME01000026_gene532	331.0	0	N/A	N/A
structural_annotation	UHGV-0243473_48	PF16092,MF_02210,NF007025,COG3818	N/A	N/A	N/A	N/A
KOfam	UHGV-0243473_49	K03497	73.2	6.2e-21	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0243473_49	phrog_620	167.7	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0243473_49	UniRef90_UPI00137A23F7	201.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0243473_49	201846.B5SP22_9CAUD	150.0	2.00386e-43	helicase activity	N/A
PADLOC	UHGV-0243473_49	MTase_II_00015	85.6	8.7e-25	Type II methyltransferase	RM
Pfam	UHGV-0243473_49	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
structural_annotation	UHGV-0243473_49	PF02195,TIGR04285,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0243473_50	phrog_36	50.5	0.000000000000038	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0243473_50	PF05263,TIGR01636	N/A	N/A	N/A	N/A
Pfam	UHGV-0243473_51	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
Pfam	UHGV-0243473_51	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
structural_annotation	UHGV-0243473_51	NF040595	N/A	N/A	N/A	N/A
Pfam	UHGV-0243473_52	PF20037	N/A	N/A	N/A	DUF6440
structural_annotation	UHGV-0243473_52	PF20037	N/A	N/A	N/A	N/A
PHROG	UHGV-0243473_55	phrog_2164	58.7	9.1e-17	N/A	unknown function
PHROG	UHGV-0243473_56	phrog_7704	48.9	0.00000000000012	N/A	unknown function
Pfam	UHGV-0243473_56	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0243473_56	NF041588	N/A	N/A	N/A	N/A
UniRef90	UHGV-0243473_58	UniRef90_A0A2V2FJ47	103.0	1.07e-25	N/A	N/A
Pfam	UHGV-0243473_58	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0243473_60	phrog_824	144.6	3.09687e-43	N/A	unknown function
UniRef90	UHGV-0243473_60	UniRef90_A0A6N8GXS9	149.0	6.02558e-44	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0243473_60	397288.C806_00096	122.0	5.88e-34	VRR_NUC	N/A
Pfam	UHGV-0243473_60	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0243473_61	PF13069	N/A	N/A	N/A	N/A
PHROG	UHGV-0243473_62	phrog_2149	71.6	5.7e-21	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0243473_62	UniRef90_UPI00164BB1D1	127.0	3.46e-32	transcriptional regulator	N/A
eggNOG-mapper	UHGV-0243473_62	203119.Cthe_2466	109.0	4.06e-25	N/A	N/A
structural_annotation	UHGV-0243473_62	PF01475,TIGR01610,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-0243473_63	K03111	143.6	1.99965e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0243473_63	phrog_44	141.3	4.79945e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0243473_63	UniRef90_A0A2V2FMD6	146.0	6.96445e-43	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0243473_63	1262914.BN533_00181	121.0	1.25e-33	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0243473_63	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0243473_63	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0243473_63	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0243473_63	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0243473_63	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0243473_64	phrog_72	57.9	1.8e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0243473_64	UniRef90_A0A8D9PDS2	130.0	3.23e-35	NinB protein	N/A
eggNOG-mapper	UHGV-0243473_64	445972.ANACOL_01825	120.0	5.81e-32	N/A	N/A
structural_annotation	UHGV-0243473_64	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0243473_65	phrog_27776	87.9	1.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0243473_65	1382356.JQMP01000004_gene51	121.0	2.61e-32	N/A	N/A
PHROG	UHGV-0243473_66	phrog_253	87.7	1.5e-25	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0243473_66	UniRef90_A0A843H617	113.0	5.28e-29	Siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0243473_66	748224.HMPREF9436_03356	99.0	3.95e-24	Siphovirus Gp157	N/A
Pfam	UHGV-0243473_66	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0243473_66	PF05565	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0243473	Yes	38,644	52	100	1