vOTU vOTU-049619

vOTU: vOTU-049619

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-049619
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-02927 → vGENUS-03903 → vSUBGEN-15434 → vOTU-049619
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemania → Holdemania massiliensis
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0252764
Biosample ID	SAMN13254975
Genome length (bp)	31,217 bps
CheckV completeness	100.00% (Complete)
CDS count	49
CDS density	94.07%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemania → Holdemania massiliensis	Total connections	27	Host agreement	85.19
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemania	Total connections	6	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0252764_2	K22300	41.2	0.000000000034	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0252764_2	UniRef90_UPI001899CD05	129.0	2.57e-36	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0252764_2	97138.C820_01960	62.4	0.000000000106	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0252764_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0252764_2	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0252764_2	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0252764_4	K06400	272.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0252764_4	phrog_95	283.2	0	integrase	integration and excision
UniRef90	UHGV-0252764_4	UniRef90_UPI00189B90C5	806.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0252764_4	525254.HMPREF0072_1329	221.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0252764_4	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0252764_4	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0252764_4	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0252764_4	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0252764_4	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0252764_5	545243.BAEV01000153_gene381	57.4	0.000000151	N/A	N/A
PHROG	UHGV-0252764_6	phrog_4105	66.3	4.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0252764_6	1235798.C817_02564	81.6	1.01e-18	N/A	N/A
PHROG	UHGV-0252764_7	phrog_1129	72.6	4e-21	holin	lysis
UniRef90	UHGV-0252764_7	UniRef90_A0A6N7S5W6	160.0	0	Holin	N/A
eggNOG-mapper	UHGV-0252764_7	1158601.I585_01143	67.0	0.000000000000159	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0252764_7	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
PHROG	UHGV-0252764_8	phrog_3392	150.1	1.82169e-44	N/A	unknown function
eggNOG-mapper	UHGV-0252764_8	1126950.G9J1S7_9CAUD	135.0	1.86e-39	N/A	N/A
UniRef90	UHGV-0252764_9	UniRef90_UPI000A41DB27	428.0	0	phosphodiester glycosidase family protein	N/A
eggNOG-mapper	UHGV-0252764_9	1232449.BAHV02000016_gene1807	75.1	0.00000000000269	N/A	N/A
eggNOG-mapper	UHGV-0252764_11	999413.HMPREF1094_01998	73.2	0.00000000000586	N/A	N/A
PHROG	UHGV-0252764_13	phrog_1067	264.2	0	minor head protein	head and packaging
UniRef90	UHGV-0252764_13	UniRef90_UPI00189A8481	1284.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0252764_13	1123263.AUKY01000068_gene489	269.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0252764_13	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0252764_13	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0252764_13	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0252764_13	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0252764_14	phrog_33	62.7	9.6e-18	distal tail protein Dit	tail
UniRef90	UHGV-0252764_14	UniRef90_A0A1C5W6B6	169.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0252764_14	1123263.AUKY01000068_gene490	127.0	4.49e-33	tail component	N/A
COG	UHGV-0252764_14	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0252764_14	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0252764_15	phrog_305	91.5	1.2e-26	tail length tape measure protein	tail
UniRef90	UHGV-0252764_15	UniRef90_A0A1Y4R6K5	169.0	3.15001e-40	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0252764_15	1160721.RBI_II00528	213.0	0	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0252764_15	COG1006	N/A	N/A	Multisubunit Na+/H+ antiporter, MnhC subunit	N/A
structural_annotation	UHGV-0252764_15	COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0252764_18	phrog_88	100.8	1.4e-29	major tail protein	tail
UniRef90	UHGV-0252764_18	UniRef90_UPI0018771F27	128.0	9.71e-34	phage tail protein	N/A
eggNOG-mapper	UHGV-0252764_18	33035.JPJF01000039_gene278	68.6	0.0000000000137	N/A	N/A
NCBIFam	UHGV-0252764_18	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0252764_18	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0252764_19	phrog_5	49.1	0.00000000000014	tail completion or Neck1 protein	connector
UniRef90	UHGV-0252764_19	UniRef90_R6UNR2	134.0	3.42e-37	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0252764_19	908340.HMPREF9406_2573	134.0	5.73e-38	N/A	N/A
NCBIFam	UHGV-0252764_19	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0252764_19	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0252764_20	1232446.BAIE02000002_gene829	102.0	7.11e-27	N/A	N/A
structural_annotation	UHGV-0252764_20	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0252764_21	phrog_19734	70.0	2.3e-20	N/A	unknown function
eggNOG-mapper	UHGV-0252764_21	999413.HMPREF1094_02006	49.3	0.00000887	N/A	N/A
structural_annotation	UHGV-0252764_21	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0252764_22	phrog_2550	68.7	5.6e-20	N/A	unknown function
UniRef90	UHGV-0252764_22	UniRef90_UPI0008717716	61.6	0.000000000211	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0252764_22	1235798.C817_04586	70.5	0.0000000000000141	N/A	N/A
structural_annotation	UHGV-0252764_22	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0252764_23	phrog_10	209.2	0	major head protein	head and packaging
UniRef90	UHGV-0252764_23	UniRef90_UPI001898FF14	887.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0252764_23	1226322.HMPREF1545_00116	531.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0252764_23	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0252764_23	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0252764_23	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0252764_23	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0252764_23	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0252764_24	K06904	160.0	0	N/A	N/A
PHROG	UHGV-0252764_24	phrog_80	188.2	0	head maturation protease	head and packaging
UniRef90	UHGV-0252764_24	UniRef90_UPI00189B2313	367.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0252764_24	1226322.HMPREF1545_00115	255.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0252764_24	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0252764_24	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0252764_24	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0252764_24	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0252764_25	phrog_12	172.4	0	portal protein	head and packaging
UniRef90	UHGV-0252764_25	UniRef90_UPI001896E01B	793.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0252764_25	1226322.HMPREF1545_00114	520.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0252764_25	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0252764_25	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0252764_25	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0252764_25	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0252764_26	phrog_9	298.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0252764_26	UniRef90_UPI00189ADFAA	1158.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0252764_26	1121428.DESHY_20134___1	736.0	0	Phage Terminase	N/A
Pfam	UHGV-0252764_26	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0252764_26	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0252764_26	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0252764_26	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0252764_27	phrog_361	61.7	1.5e-17	terminase small subunit	head and packaging
UniRef90	UHGV-0252764_27	UniRef90_UPI001E33EE3A	225.0	0	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0252764_27	1033744.CAEL01000029_gene1286	60.8	0.000000000277	Phage terminase, small subunit	N/A
Pfam	UHGV-0252764_27	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0252764_27	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0252764_28	phrog_119	61.0	2.1e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0252764_28	UniRef90_UPI00189741C6	244.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0252764_28	1232453.BAIF02000028_gene2717	79.0	2.15e-17	HNH nucleases	N/A
COG	UHGV-0252764_28	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0252764_29	PF04545,PF01920,TIGR01636	N/A	N/A	N/A	N/A
COG	UHGV-0252764_32	COG2126	N/A	N/A	Ribosomal protein L37E	N/A
UniRef90	UHGV-0252764_33	UniRef90_UPI00189F3291	117.0	3.74e-32	winged helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0252764_33	PF03444,MF_01819,TIGR04176,COG2345	N/A	N/A	N/A	N/A
KOfam	UHGV-0252764_36	K03111	135.7	5.70001e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0252764_36	phrog_44	138.7	4.00001e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0252764_36	UniRef90_UPI001F06C5E9	244.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0252764_36	545696.HOLDEFILI_00345	157.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0252764_36	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0252764_36	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0252764_36	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0252764_36	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0252764_36	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0252764_37	phrog_2245	103.1	2.7e-30	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0252764_37	UniRef90_A0A4U9RLZ8	67.0	0.00000000000143	N/A	N/A
eggNOG-mapper	UHGV-0252764_37	293826.Amet_2596	68.9	0.000000000000212	N/A	N/A
structural_annotation	UHGV-0252764_37	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
PHROG	UHGV-0252764_38	phrog_2045	217.9	0	N/A	unknown function
UniRef90	UHGV-0252764_38	UniRef90_A0A412G4G1	480.0	0	N/A	N/A
eggNOG-mapper	UHGV-0252764_38	1235790.C805_00077	237.0	0	N/A	N/A
Pfam	UHGV-0252764_38	PF07505	N/A	N/A	N/A	DUF5131
COG	UHGV-0252764_38	COG4422	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0252764_38	PF07505,TIGR04471,COG4422	N/A	N/A	N/A	N/A
PHROG	UHGV-0252764_39	phrog_9804	139.0	3.00004e-41	N/A	unknown function
UniRef90	UHGV-0252764_39	UniRef90_A0A412G468	353.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-0252764_39	903814.ELI_3550	143.0	7.06002e-41	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0252764_39	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0252764_39	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0252764_40	phrog_2514	100.5	2e-29	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0252764_40	UniRef90_A0A318KSV9	101.0	3.34e-22	DnaD/phage-associated family protein	N/A
eggNOG-mapper	UHGV-0252764_40	397291.C804_01603	180.0	0	DnaD domain protein	N/A
COG	UHGV-0252764_40	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0252764_40	PF10771,MF_01177,TIGR01714,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0252764_41	K01160	65.9	1.2e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0252764_41	phrog_140	142.1	2.59941e-42	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0252764_41	UniRef90_A0A412G4Q3	276.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0252764_41	857293.CAAU_0790	148.0	7.84727e-44	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0252764_41	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0252764_41	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0252764_41	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0252764_42	phrog_997	51.1	0.000000000000024	replication terminator	DNA, RNA and nucleotide metabolism
KOfam	UHGV-0252764_43	K07455	299.1	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0252764_43	phrog_148	282.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0252764_43	UniRef90_A0A412G4J9	555.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-0252764_43	1226322.HMPREF1545_00015	361.0	0	RecT family	N/A
Pfam	UHGV-0252764_43	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0252764_43	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0252764_43	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0252764_43	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0252764_44	phrog_434	333.7	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0252764_44	UniRef90_A0A412G498	628.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-0252764_44	428125.CLOLEP_01823	276.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0252764_44	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0252764_44	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0252764_44	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0252764_44	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0252764_46	1123263.AUKY01000096_gene1822	120.0	1.97e-30	C-5 cytosine-specific DNA methylase	N/A
COG	UHGV-0252764_46	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
UniRef90	UHGV-0252764_47	UniRef90_A0A412G4C5	328.0	0	LYZ2 domain-containing protein	N/A
Pfam	UHGV-0252764_47	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
COG	UHGV-0252764_47	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0252764_47	PF01832,NF038016,COG1705	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0252764	Yes	31,217	41	100	1
UHGV-1623651	No	11,572	40	34	1
UHGV-0779632	No	10,467	40	30	1