vOTU vOTU-049671

vOTU: vOTU-049671

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-049671
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-00190 → vSUBGEN-30786 → vOTU-049671
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0256018
Biosample ID	SAMEA4813957
Genome length (bp)	41,991 bps
CheckV completeness	100.00% (Complete)
CDS count	74
CDS density	91.91%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	997	Host agreement	98.19
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	12	Host agreement	91.67

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0256018_2	phrog_10993	143.7	2.8026e-45	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0256018_2	UniRef90_A0A1Q6KPN8	219.0	0	N/A	N/A
eggNOG-mapper	UHGV-0256018_2	718252.FP2_16970	193.0	0	N/A	N/A
structural_annotation	UHGV-0256018_2	PF19789,PF18911	N/A	N/A	N/A	N/A
UniRef90	UHGV-0256018_4	UniRef90_UPI001D07AB37	89.4	1.82e-22	XkdX family protein	N/A
eggNOG-mapper	UHGV-0256018_4	718252.FP2_16990	84.7	2.07e-21	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0256018_4	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0256018_4	PF09693	N/A	N/A	N/A	N/A
KOfam	UHGV-0256018_5	K07273	155.5	0	acm; lysozyme	N/A
PHROG	UHGV-0256018_5	phrog_291	116.2	3.2e-34	endolysin	lysis
UniRef90	UHGV-0256018_5	UniRef90_A0A564U0D3	519.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0256018_5	718252.FP2_04890	254.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0256018_5	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0256018_5	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0256018_5	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0256018_6	phrog_1863	77.8	7.8e-23	N/A	unknown function
eggNOG-mapper	UHGV-0256018_6	718252.FP2_04900	153.0	0	N/A	N/A
PHROG	UHGV-0256018_7	phrog_15303	78.4	7.8e-23	N/A	unknown function
KOfam	UHGV-0256018_8	K24213	54.8	9.7e-16	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0256018_8	phrog_819	54.5	9.3e-16	tail protein	tail
eggNOG-mapper	UHGV-0256018_8	411483.FAEPRAA2165_00757	163.0	3.25942e-42	N/A	N/A
Pfam	UHGV-0256018_8	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0256018_8	PF10651	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0256018_11	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0256018_12	K23779	58.1	2.4e-16	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0256018_12	phrog_1373	42.6	0.0000000000081	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0256018_12	944479.JQLX01000018_gene150	57.0	0.0000000865	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0256018_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0256018_12	COG0662	N/A	N/A	Mannose-6-phosphate isomerase, cupin superfamily	N/A
structural_annotation	UHGV-0256018_12	PF01381,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0256018_14	phrog_3754	98.4	7.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-0256018_14	1235790.C805_00054	114.0	5.61e-31	N/A	N/A
PHROG	UHGV-0256018_15	phrog_21718	89.6	3.8e-26	N/A	unknown function
eggNOG-mapper	UHGV-0256018_15	397290.C810_05210	79.7	1.14e-16	N/A	N/A
PHROG	UHGV-0256018_16	phrog_22984	71.6	1.1e-20	N/A	unknown function
PHROG	UHGV-0256018_17	phrog_16490	193.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0256018_17	397290.C810_01328	140.0	5.58e-37	N/A	N/A
PHROG	UHGV-0256018_18	phrog_20016	203.4	0	N/A	unknown function
UniRef90	UHGV-0256018_18	UniRef90_A0A285PT46	214.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0256018_18	1226322.HMPREF1545_00077	188.0	0	N/A	N/A
structural_annotation	UHGV-0256018_18	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0256018_19	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-0256018_21	K14059	136.7	3e-40	int; integrase	N/A
PHROG	UHGV-0256018_21	phrog_1	162.9	0	integrase	integration and excision
UniRef90	UHGV-0256018_21	UniRef90_A0A6N7TNQ4	705.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0256018_21	411471.SUBVAR_05137	261.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0256018_21	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0256018_21	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0256018_21	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0256018_22	UniRef90_A0A6N7TLT0	207.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0256018_22	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0256018_22	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0256018_25	748224.HMPREF9436_01443	323.0	0	vancomycin resistance protein	N/A
COG	UHGV-0256018_25	COG2720	N/A	N/A	Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domains	N/A
Pfam	UHGV-0256018_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0256018_28	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0256018_28	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0256018_29	K07729	41.3	0.000000000034	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0256018_29	phrog_8	43.9	0.0000000000054	transcriptional regulator	transcription regulation
UniRef90	UHGV-0256018_29	UniRef90_UPI001C009F10	116.0	1.29e-32	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0256018_29	1268072.PSAB_01325	53.1	0.0000000183	Transcriptional regulator	N/A
Pfam	UHGV-0256018_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0256018_29	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0256018_29	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0256018_32	phrog_463	225.9	0	anti-repressor	transcription regulation
UniRef90	UHGV-0256018_32	UniRef90_UPI00137B411D	277.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0256018_32	411490.ANACAC_00813	233.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0256018_32	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0256018_32	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0256018_32	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0256018_32	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0256018_35	PF10743,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0256018_39	PF06718	N/A	N/A	N/A	N/A
PHROG	UHGV-0256018_41	phrog_7838	118.1	6.6e-35	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0256018_41	UniRef90_A0A8D9UGW3	172.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0256018_41	742767.HMPREF9456_02052	139.0	1.05e-38	N/A	N/A
structural_annotation	UHGV-0256018_41	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
KOfam	UHGV-0256018_42	K03111	143.9	1.69978e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0256018_42	phrog_44	143.5	1.10002e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0256018_42	UniRef90_D4K451	279.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0256018_42	718252.FP2_06770	279.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0256018_42	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0256018_42	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0256018_42	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0256018_42	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0256018_42	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0256018_43	K02086	64.0	2.2e-18	dnaD; DNA replication protein	N/A
PHROG	UHGV-0256018_43	phrog_186	73.2	4.5e-21	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0256018_43	UniRef90_A0A6N7TLH4	259.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0256018_43	877411.JMMA01000002_gene2292	68.9	0.0000000000669	N/A	N/A
Pfam	UHGV-0256018_43	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0256018_43	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0256018_43	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0256018_43	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0256018_44	PF11417	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0256018_45	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
UniRef90	UHGV-0256018_46	UniRef90_UPI001C009709	114.0	9.01e-30	N/A	N/A
PHROG	UHGV-0256018_49	phrog_757	181.3	0	DNA methyltransferase	other
UniRef90	UHGV-0256018_49	UniRef90_A0A3E2U1Y9	357.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0256018_49	748224.HMPREF9436_03069	275.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0256018_49	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0256018_49	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0256018_51	phrog_1384	126.5	1.9e-37	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-0256018_51	665956.HMPREF1032_03086	274.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-0256018_51	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
PHROG	UHGV-0256018_52	phrog_3136	135.5	2e-40	N/A	unknown function
UniRef90	UHGV-0256018_52	UniRef90_UPI001CBCD733	170.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0256018_52	1235793.C809_02645	70.5	0.00000000000167	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0256018_52	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0256018_52	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0256018_53	K01160	56.9	7e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0256018_53	phrog_34	58.9	1.2e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0256018_53	UniRef90_A0A6N7TND6	221.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0256018_53	875454.BAEW01000002_gene491	137.0	2.9e-40	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0256018_53	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0256018_53	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0256018_53	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0256018_54	phrog_2715	147.7	3.50325e-44	N/A	unknown function
eggNOG-mapper	UHGV-0256018_54	718252.FP2_16370	146.0	1.17989e-42	N/A	N/A
structural_annotation	UHGV-0256018_54	PF18406	N/A	N/A	N/A	N/A
PHROG	UHGV-0256018_55	phrog_36	54.4	0.0000000000000023	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0256018_55	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0256018_56	phrog_606	91.9	6.8e-27	terminase small subunit	head and packaging
UniRef90	UHGV-0256018_56	UniRef90_UPI001C02EFD1	327.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0256018_56	397290.C810_05185	139.0	1.49e-39	DNA-packaging protein gp3	N/A
Pfam	UHGV-0256018_56	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0256018_56	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0256018_57	K06909	145.3	5.70328e-43	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0256018_57	phrog_10250	178.9	0	N/A	unknown function
UniRef90	UHGV-0256018_57	UniRef90_A0A844D8I4	840.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0256018_57	411490.ANACAC_00783	491.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0256018_57	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0256018_57	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0256018_57	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0256018_57	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0256018_57	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0256018_58	phrog_64	124.4	4.1e-37	portal protein	head and packaging
UniRef90	UHGV-0256018_58	UniRef90_A0A6N7TNT3	871.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0256018_58	1042156.CXIVA_01850	82.4	0.0000000000000589	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0256018_58	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0256018_58	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0256018_59	phrog_2468	80.3	3.5e-23	head morphogenesis	head and packaging
UniRef90	UHGV-0256018_59	UniRef90_A0A6N7TLR7	639.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0256018_59	1504822.CCNO01000013_gene286	114.0	5.4e-25	cell adhesion	N/A
Pfam	UHGV-0256018_59	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0256018_59	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0256018_59	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0256018_62	phrog_5	50.1	0.000000000000077	tail completion or Neck1 protein	connector
UniRef90	UHGV-0256018_62	UniRef90_A0A6N7TNP6	298.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0256018_62	929506.CbC4_1219	91.7	1.6e-21	N/A	N/A
structural_annotation	UHGV-0256018_62	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0256018_64	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0256018_65	phrog_544	155.8	0	major head protein	head and packaging
UniRef90	UHGV-0256018_65	UniRef90_R0BKA1	457.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0256018_65	476272.RUMHYD_01776	338.0	0	N/A	N/A
structural_annotation	UHGV-0256018_65	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0256018_67	phrog_17977	43.1	0.0000000000062	N/A	unknown function
structural_annotation	UHGV-0256018_67	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0256018_68	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0256018_69	phrog_885	57.2	2.1e-16	major tail protein	tail
eggNOG-mapper	UHGV-0256018_69	1504822.CCNO01000012_gene492	100.0	1.25e-23	N/A	N/A
structural_annotation	UHGV-0256018_69	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0256018_72	phrog_28775	117.7	9.5e-35	tail length tape measure protein	tail
UniRef90	UHGV-0256018_72	UniRef90_A0A844DDD5	637.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0256018_72	1492737.FEM08_12070	134.0	5.12e-30	tape measure	N/A
Pfam	UHGV-0256018_72	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0256018_72	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0256018_72	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0256018_72	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0256018_73	phrog_3558	275.9	0	tail protein	tail
UniRef90	UHGV-0256018_73	UniRef90_UPI001C01D15B	676.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0256018_73	1120933.ATUY01000002_gene164	154.0	5.96e-37	Prophage endopeptidase tail	N/A
Pfam	UHGV-0256018_73	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0256018_73	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0256018_73	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0256018_74	1235792.C808_00094	82.8	3.66e-17	phage tail	N/A
COG	UHGV-0256018_74	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0256018_74	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0256018	Yes	41,991	55	100	1