vOTU vOTU-049930

vOTU: vOTU-049930

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-049930
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00771 → vGENUS-01126 → vSUBGEN-24556 → vOTU-049930
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0274537
Biosample ID	SAMN08382846
Genome length (bp)	37,663 bps
CheckV completeness	100.00% (Complete)
CDS count	60
CDS density	90.47%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus	Total connections	18	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus	Total connections	7	Host agreement	71.43

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0274537_1	phrog_824	66.0	5.6e-19	N/A	unknown function
UniRef90	UHGV-0274537_1	UniRef90_T1DET6	70.1	0.0000000000000898	VRR-NUC domain protein (Fragment)	N/A
eggNOG-mapper	UHGV-0274537_1	665956.HMPREF1032_00132	91.7	1.07e-22	VRR_NUC	N/A
UniRef90	UHGV-0274537_8	UniRef90_UPI000F0633F9	54.7	0.0000000312	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0274537_8	693746.OBV_43260	52.0	0.0000000618	N/A	N/A
KOfam	UHGV-0274537_11	K22300	62.6	8.3e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0274537_11	phrog_8	50.0	0.00000000000005	transcriptional regulator	transcription regulation
UniRef90	UHGV-0274537_11	UniRef90_A0A1Q9J555	103.0	1.1e-25	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0274537_11	748224.HMPREF9436_01444	86.7	9.3e-20	N/A	N/A
Pfam	UHGV-0274537_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0274537_11	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0274537_11	PF12844,MF_02017,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0274537_13	phrog_1847	520.8	0	N/A	unknown function
UniRef90	UHGV-0274537_13	UniRef90_R6IA31	498.0	0	T5orf172 domain	N/A
eggNOG-mapper	UHGV-0274537_13	718252.FP2_06880	473.0	0	N/A	N/A
Pfam	UHGV-0274537_13	PF13250	N/A	N/A	N/A	DUF4041
Pfam	UHGV-0274537_13	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-0274537_13	COG0172	N/A	N/A	Seryl-tRNA synthetase	N/A
structural_annotation	UHGV-0274537_13	PF13250,PF19824,MF_01506	N/A	N/A	N/A	N/A
Pfam	UHGV-0274537_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0274537_14	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0274537_14	PF13443,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0274537_15	K14059	89.9	4.5e-26	int; integrase	N/A
PHROG	UHGV-0274537_15	phrog_1	117.1	2.1e-34	integrase	integration and excision
UniRef90	UHGV-0274537_15	UniRef90_UPI001874116E	395.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0274537_15	1235835.C814_03141	178.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0274537_15	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0274537_15	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0274537_15	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0274537_16	1226322.HMPREF1545_00079	97.4	1.11e-24	N/A	N/A
structural_annotation	UHGV-0274537_17	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0274537_18	phrog_20016	189.6	0	N/A	unknown function
UniRef90	UHGV-0274537_18	UniRef90_A0A285PT46	205.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0274537_18	1226322.HMPREF1545_00077	179.0	0	N/A	N/A
structural_annotation	UHGV-0274537_18	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0274537_19	phrog_16490	131.4	3.4e-40	N/A	unknown function
eggNOG-mapper	UHGV-0274537_19	1408437.JNJN01000043_gene803	128.0	1.24e-33	N/A	N/A
PHROG	UHGV-0274537_20	phrog_22984	73.4	1.9e-21	N/A	unknown function
PHROG	UHGV-0274537_21	phrog_21718	105.6	4.3e-31	N/A	unknown function
eggNOG-mapper	UHGV-0274537_21	476272.RUMHYD_01768	74.7	0.00000000000000725	N/A	N/A
PHROG	UHGV-0274537_22	phrog_3754	100.7	1.3e-29	N/A	unknown function
eggNOG-mapper	UHGV-0274537_22	476272.RUMHYD_01764	155.0	0	N/A	N/A
PHROG	UHGV-0274537_23	phrog_199	66.2	3.9e-19	holin	lysis
UniRef90	UHGV-0274537_23	UniRef90_A0A3C0NPD5	181.0	0	Holin	N/A
eggNOG-mapper	UHGV-0274537_23	1121344.JHZO01000003_gene684	148.0	1.33123e-43	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0274537_23	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0274537_23	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0274537_23	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0274537_23	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0274537_24	phrog_14030	163.1	0	N/A	unknown function
UniRef90	UHGV-0274537_24	UniRef90_A0A316NTC6	219.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0274537_24	641107.CDLVIII_3774	193.0	0	Bacteriophage peptidoglycan hydrolase	N/A
Pfam	UHGV-0274537_24	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0274537_24	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0274537_24	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0274537_24	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0274537_29	PF07210,TIGR03000	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0274537_30	1408422.JHYF01000026_gene3527	60.1	0.0000000312	nuclear chromosome segregation	N/A
COG	UHGV-0274537_30	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0274537_31	phrog_32744	238.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0274537_31	1120998.AUFC01000030_gene2247	160.0	1.58e-38	N/A	N/A
structural_annotation	UHGV-0274537_31	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0274537_32	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0274537_33	phrog_23464	251.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0274537_33	665950.HMPREF1025_02660	252.0	0	phage tail tape measure protein	N/A
COG	UHGV-0274537_33	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0274537_33	PF20155,MF_04138	N/A	N/A	N/A	N/A
PHROG	UHGV-0274537_35	phrog_885	56.6	3e-16	major tail protein	tail
UniRef90	UHGV-0274537_35	UniRef90_A0A843J9F0	176.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0274537_35	1504822.CCNO01000012_gene492	198.0	0	N/A	N/A
structural_annotation	UHGV-0274537_35	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0274537_36	PF11367	N/A	N/A	N/A	N/A
Pfam	UHGV-0274537_37	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0274537_37	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0274537_37	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0274537_39	phrog_283	297.5	0	major head protein	head and packaging
UniRef90	UHGV-0274537_39	UniRef90_A0A1C6I0L7	343.0	0	p22 coat protein-gene protein 5	N/A
eggNOG-mapper	UHGV-0274537_39	1499683.CCFF01000014_gene3908	339.0	0	P22 coat protein - gene protein 5	N/A
Pfam	UHGV-0274537_39	PF11651	N/A	N/A	P22 coat protein - gene protein 5	P22_CoatProtein
structural_annotation	UHGV-0274537_39	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0274537_40	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0274537_41	phrog_5	65.7	9.2e-19	tail completion or Neck1 protein	connector
UniRef90	UHGV-0274537_41	UniRef90_A0A7X5E1T2	109.0	5.42e-28	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0274537_41	1123309.AQYB01000018_gene814	82.8	2.47e-18	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0274537_41	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0274537_41	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0274537_41	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0274537_42	phrog_2468	97.3	2.2e-28	head morphogenesis	head and packaging
UniRef90	UHGV-0274537_42	UniRef90_A0A3A9EHQ6	323.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0274537_42	1280685.AUKC01000004_gene1632	100.0	4.13e-20	Phage Mu protein F like protein	N/A
Pfam	UHGV-0274537_42	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
Pfam	UHGV-0274537_42	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
COG	UHGV-0274537_42	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0274537_42	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0274537_43	phrog_64	130.1	1.2e-38	portal protein	head and packaging
UniRef90	UHGV-0274537_43	UniRef90_A0A285PU84	398.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0274537_43	411468.CLOSCI_00292	79.7	0.000000000000421	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-0274537_43	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0274537_43	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0274537_44	K06909	136.0	3.3e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0274537_44	phrog_2	162.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0274537_44	UniRef90_A0A373MY72	549.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0274537_44	397290.C810_05187	496.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0274537_44	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0274537_44	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0274537_44	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0274537_44	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0274537_45	phrog_309	85.5	6.1e-25	terminase small subunit	head and packaging
UniRef90	UHGV-0274537_45	UniRef90_A0A417BYR0	84.7	1.14e-18	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0274537_45	742733.HMPREF9469_01828	85.9	5.29e-20	transposase activity	N/A
COG	UHGV-0274537_45	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
KOfam	UHGV-0274537_46	K07319	131.1	9.4e-39	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0274537_46	phrog_498	423.3	0	DNA methyltransferase	other
UniRef90	UHGV-0274537_46	UniRef90_R5AIZ8	429.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0274537_46	1423758.BN55_01455	395.0	0	DNA methylase	N/A
PADLOC	UHGV-0274537_46	MTase_II_00015	223.0	0	Type II methyltransferase	RM
Pfam	UHGV-0274537_46	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0274537_46	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0274537_46	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0274537_46	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0274537_49	phrog_3584	163.7	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0274537_49	1226322.HMPREF1545_03841	253.0	0	N/A	N/A
structural_annotation	UHGV-0274537_49	PF01446,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-0274537_50	K19779	43.9	0.0000000000035	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-0274537_50	phrog_599	51.4	0.000000000000024	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0274537_50	56780.SYN_03368	48.1	0.00000106	translation initiation factor activity	N/A
Pfam	UHGV-0274537_50	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0274537_50	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0274537_50	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
COG	UHGV-0274537_50	COG1601	N/A	N/A	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	N/A
structural_annotation	UHGV-0274537_50	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0274537_54	phrog_3136	130.1	7.9e-39	N/A	unknown function
UniRef90	UHGV-0274537_54	UniRef90_A0A6N7TMC2	122.0	1.03e-31	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0274537_54	97139.C824_00742	69.3	0.00000000000207	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0274537_54	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0274537_54	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0274537_56	phrog_15609	192.1	0	N/A	unknown function
UniRef90	UHGV-0274537_56	UniRef90_A0A7G9WGA3	116.0	1.89e-26	N/A	N/A
eggNOG-mapper	UHGV-0274537_56	1395513.P343_08065	107.0	6.41e-24	N/A	N/A
Pfam	UHGV-0274537_56	PF11300	N/A	N/A	N/A	DUF3102
COG	UHGV-0274537_56	COG2433	N/A	N/A	Possible nuclease of RNase H fold, RuvC/YqgF family	N/A
structural_annotation	UHGV-0274537_56	PF11300,PF07321,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0274537_57	phrog_8470	270.8	0	N/A	unknown function
UniRef90	UHGV-0274537_57	UniRef90_UPI001C1063FF	219.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0274537_57	1378168.N510_01842	206.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0274537_57	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0274537_57	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0274537_58	phrog_38338	87.6	1.4e-25	N/A	unknown function
eggNOG-mapper	UHGV-0274537_58	693746.OBV_25410	127.0	3.64e-36	N/A	N/A
PHROG	UHGV-0274537_59	phrog_24518	60.2	3.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0274537_59	1519439.JPJG01000077_gene922	66.2	0.00000000012	N/A	N/A
PHROG	UHGV-0274537_60	phrog_824	70.3	2.7e-20	N/A	unknown function
UniRef90	UHGV-0274537_60	UniRef90_UPI001D07B4F4	78.2	1.55e-17	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0274537_60	411470.RUMGNA_02049	78.2	9.21e-18	VRR-NUC domain	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0274537	Yes	37,663	55	100	1
UHGV-1394410	No	32,404	55	87	1
UHGV-0057799	No	22,658	55	61	1
UHGV-1466205	No	22,658	55	61	1
UHGV-0040125	No	20,002	55	54	1