vOTU vOTU-049934

vOTU: vOTU-049934

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-049934
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00771 → vGENUS-01126 → vSUBGEN-24553 → vOTU-049934
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0274758
Biosample ID	SAMEA4813831
Genome length (bp)	38,315 bps
CheckV completeness	100.00% (Complete)
CDS count	66
CDS density	91.62%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus	Total connections	12	Host agreement	91.67
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp003150355	Total connections	4	Host agreement	75

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0274758_2	K14059	88.3	1.4e-25	int; integrase	N/A
PHROG	UHGV-0274758_2	phrog_1	116.1	3.8e-34	integrase	integration and excision
UniRef90	UHGV-0274758_2	UniRef90_UPI001874116E	397.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0274758_2	1235835.C814_03141	179.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0274758_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0274758_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0274758_2	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0274758_3	1226322.HMPREF1545_00079	97.8	7.85e-25	N/A	N/A
structural_annotation	UHGV-0274758_4	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0274758_5	phrog_20016	195.2	0	N/A	unknown function
UniRef90	UHGV-0274758_5	UniRef90_A0A285PT46	206.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0274758_5	1226322.HMPREF1545_00077	182.0	0	N/A	N/A
structural_annotation	UHGV-0274758_5	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0274758_6	phrog_16490	128.3	2.9e-39	N/A	unknown function
eggNOG-mapper	UHGV-0274758_6	658655.HMPREF0988_00917	140.0	3.53e-38	N/A	N/A
PHROG	UHGV-0274758_7	phrog_22984	73.7	1.4e-21	N/A	unknown function
PHROG	UHGV-0274758_8	phrog_21718	105.9	3.4e-31	N/A	unknown function
eggNOG-mapper	UHGV-0274758_8	476272.RUMHYD_01768	74.7	0.00000000000000725	N/A	N/A
PHROG	UHGV-0274758_9	phrog_3754	101.6	7.1e-30	N/A	unknown function
eggNOG-mapper	UHGV-0274758_9	476272.RUMHYD_01764	155.0	0	N/A	N/A
PHROG	UHGV-0274758_11	phrog_199	66.1	4.3e-19	holin	lysis
UniRef90	UHGV-0274758_11	UniRef90_A0A3C0NPD5	184.0	0	Holin	N/A
eggNOG-mapper	UHGV-0274758_11	742738.HMPREF9460_00365	149.0	5.60519e-44	Bacteriophage holin family	N/A
Pfam	UHGV-0274758_11	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0274758_11	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0274758_11	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0274758_11	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0274758_12	phrog_14030	161.3	0	N/A	unknown function
UniRef90	UHGV-0274758_12	UniRef90_A0A316NTC6	208.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0274758_12	1321782.HMPREF1986_02283	195.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0274758_12	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0274758_12	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0274758_12	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0274758_12	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0274758_13	phrog_355	56.4	4.7e-16	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0274758_13	UniRef90_A0A396KGT7	172.0	0	N/A	N/A
eggNOG-mapper	UHGV-0274758_13	97138.C820_00250	127.0	1.37e-36	N/A	N/A
Pfam	UHGV-0274758_13	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0274758_13	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0274758_15	phrog_30034	112.1	6.3e-33	N/A	unknown function
UniRef90	UHGV-0274758_15	UniRef90_A0A2Y9CAD1	154.0	1.4013e-45	Carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0274758_15	411460.RUMTOR_02099	128.0	5.49e-35	N/A	N/A
Pfam	UHGV-0274758_15	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0274758_15	PF14600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0274758_18	PF07210,TIGR03000	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0274758_19	1408422.JHYF01000026_gene3527	55.8	0.000000959	nuclear chromosome segregation	N/A
COG	UHGV-0274758_19	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0274758_20	phrog_32744	239.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0274758_20	1120998.AUFC01000030_gene2247	161.0	1.18e-38	N/A	N/A
structural_annotation	UHGV-0274758_20	PF14594,PF21722,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0274758_21	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0274758_22	phrog_23464	252.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0274758_22	665950.HMPREF1025_02660	263.0	0	phage tail tape measure protein	N/A
COG	UHGV-0274758_22	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0274758_22	PF20155,MF_04138	N/A	N/A	N/A	N/A
PHROG	UHGV-0274758_24	phrog_885	56.6	3.1e-16	major tail protein	tail
UniRef90	UHGV-0274758_24	UniRef90_A0A843J9F0	176.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0274758_24	1504822.CCNO01000012_gene492	198.0	0	N/A	N/A
structural_annotation	UHGV-0274758_24	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0274758_25	PF11367	N/A	N/A	N/A	N/A
Pfam	UHGV-0274758_26	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0274758_26	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0274758_26	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0274758_28	phrog_544	179.9	0	major head protein	head and packaging
UniRef90	UHGV-0274758_28	UniRef90_A0A810PZM2	481.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0274758_28	1347392.CCEZ01000005_gene1236	240.0	0	N/A	N/A
Pfam	UHGV-0274758_28	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0274758_28	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0274758_29	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0274758_30	phrog_5	65.7	9.4e-19	tail completion or Neck1 protein	connector
UniRef90	UHGV-0274758_30	UniRef90_A0A7X5E1T2	109.0	5.42e-28	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0274758_30	1123309.AQYB01000018_gene814	82.8	2.47e-18	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0274758_30	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0274758_30	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0274758_30	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0274758_31	phrog_2468	97.5	2e-28	head morphogenesis	head and packaging
UniRef90	UHGV-0274758_31	UniRef90_A0A3A9EHQ6	325.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0274758_31	1280685.AUKC01000004_gene1632	99.4	7.56e-20	Phage Mu protein F like protein	N/A
Pfam	UHGV-0274758_31	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
Pfam	UHGV-0274758_31	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
COG	UHGV-0274758_31	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0274758_31	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0274758_32	phrog_64	131.1	5.9e-39	portal protein	head and packaging
UniRef90	UHGV-0274758_32	UniRef90_A0A285PU84	399.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0274758_32	411468.CLOSCI_00292	79.0	0.000000000000747	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-0274758_32	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0274758_32	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0274758_33	K06909	140.1	1.90002e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0274758_33	phrog_2	160.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0274758_33	UniRef90_A0A373MY72	545.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0274758_33	397290.C810_05187	494.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0274758_33	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0274758_33	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0274758_33	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0274758_33	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0274758_34	phrog_309	158.4	0	terminase small subunit	head and packaging
UniRef90	UHGV-0274758_34	UniRef90_A0A174GY31	148.0	1.05938e-42	Phage-like protein	N/A
eggNOG-mapper	UHGV-0274758_34	1408437.JNJN01000045_gene597	144.0	1.21997e-41	HNH endonuclease	N/A
Pfam	UHGV-0274758_34	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-0274758_34	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
KOfam	UHGV-0274758_35	K07319	134.1	1.2e-39	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0274758_35	phrog_498	425.9	0	DNA methyltransferase	other
UniRef90	UHGV-0274758_35	UniRef90_R5AIZ8	427.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0274758_35	693746.OBV_19980	397.0	0	DNA methylase	N/A
PADLOC	UHGV-0274758_35	MTase_II_00015	227.7	0	Type II methyltransferase	RM
Pfam	UHGV-0274758_35	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0274758_35	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0274758_35	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0274758_35	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0274758_36	PF06530,MF_00674,TIGR01636,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0274758_38	phrog_3584	160.5	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0274758_38	1226322.HMPREF1545_03841	249.0	0	N/A	N/A
structural_annotation	UHGV-0274758_38	PF01446,NF041486	N/A	N/A	N/A	N/A
Pfam	UHGV-0274758_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-0274758_40	K19779	41.7	0.000000000018	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-0274758_40	phrog_599	51.1	0.000000000000031	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0274758_40	56780.SYN_03368	47.0	0.00000304	translation initiation factor activity	N/A
Pfam	UHGV-0274758_40	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0274758_40	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0274758_40	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
COG	UHGV-0274758_40	COG1601	N/A	N/A	Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain	N/A
structural_annotation	UHGV-0274758_40	PF14354,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0274758_42	phrog_3136	130.2	7.1e-39	N/A	unknown function
UniRef90	UHGV-0274758_42	UniRef90_UPI001C26B029	122.0	3.23e-31	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0274758_42	97139.C824_00742	74.7	0.0000000000000194	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0274758_42	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0274758_42	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
UniRef90	UHGV-0274758_45	UniRef90_UPI00145A074D	86.7	6.24e-18	N/A	N/A
PHROG	UHGV-0274758_47	phrog_954	199.6	0	DNA methyltransferase	other
UniRef90	UHGV-0274758_47	UniRef90_A0A810Q0N4	292.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0274758_47	411461.DORFOR_01143	274.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-0274758_47	MTase_II_00074	195.2	0	Type II methyltransferase	RM
Pfam	UHGV-0274758_47	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0274758_47	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-0274758_47	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
PHROG	UHGV-0274758_49	phrog_799	50.6	0.000000000000023	DNA methyltransferase	other
UniRef90	UHGV-0274758_49	UniRef90_A0A4U8T4F4	100.0	2.8e-23	Sugar-phosphate nucleotidyltransferase	N/A
eggNOG-mapper	UHGV-0274758_49	537971.HCCG_00428	94.4	4.75e-22	N/A	N/A
structural_annotation	UHGV-0274758_49	PF05869,MF_00607,NF000468,COG0030	N/A	N/A	N/A	N/A
KOfam	UHGV-0274758_50	K00558	41.8	0.0000000000079	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0274758_50	phrog_757	129.1	2.5e-38	DNA methyltransferase	other
UniRef90	UHGV-0274758_50	UniRef90_A0A1C6AHB8	395.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0274758_50	622312.ROSEINA2194_01264	377.0	0	C-5 cytosine-specific DNA methylase	N/A
Pfam	UHGV-0274758_50	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0274758_50	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0274758_50	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0274758_51	phrog_24518	60.8	2.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0274758_51	1519439.JPJG01000077_gene922	65.1	0.000000000317	N/A	N/A
PHROG	UHGV-0274758_52	phrog_824	151.4	2.8026e-45	N/A	unknown function
UniRef90	UHGV-0274758_52	UniRef90_A0A6N8GXS9	176.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0274758_52	665956.HMPREF1032_00132	154.0	0	VRR_NUC	N/A
Pfam	UHGV-0274758_52	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
UniRef90	UHGV-0274758_59	UniRef90_UPI000F0633F9	54.7	0.0000000312	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0274758_59	693746.OBV_43260	52.0	0.0000000618	N/A	N/A
KOfam	UHGV-0274758_63	K22300	48.0	0.00000000000024	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0274758_63	phrog_2967	41.7	0.000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-0274758_63	UniRef90_UPI001EDCF802	112.0	2.42e-29	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0274758_63	411471.SUBVAR_05818	91.7	5.29e-22	sequence-specific DNA binding	N/A
Pfam	UHGV-0274758_63	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0274758_63	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0274758_63	PF12844,MF_02017,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0274758_65	UniRef90_A0A7C6FQM2	98.6	2.27e-19	SAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0274758_65	1408323.JQKK01000005_gene152	116.0	9.21e-27	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	N/A
Pfam	UHGV-0274758_65	PF02037	N/A	N/A	SAP domain	SAP
KOfam	UHGV-0274758_66	K07729	43.0	0.0000000000091	K07729; putative transcriptional regulator	N/A
Pfam	UHGV-0274758_66	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0274758_66	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0274758	Yes	38,315	54	100	1