vOTU vOTU-050017

vOTU: vOTU-050017

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-050017
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00987 → vGENUS-00899 → vSUBGEN-00578 → vOTU-050017
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → CAG-217 → CAG-217 sp000436335
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0281248
Biosample ID	N/A
Genome length (bp)	38,733 bps
CheckV completeness	100.00% (Complete)
CDS count	47
CDS density	95.17%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → CAG-217 → CAG-217 sp000436335	Total connections	290	Host agreement	99.66
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → CAG-217 → CAG-217 sp000436335	Total connections	227	Host agreement	99.56

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0281248_2	UniRef90_R6J3S0	564.0	0	Peptidase_C39_2 domain-containing protein	N/A
Pfam	UHGV-0281248_2	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
structural_annotation	UHGV-0281248_2	PF11814,NF033920,COG4990	N/A	N/A	N/A	N/A
PHROG	UHGV-0281248_3	phrog_263	93.1	1.6e-27	holin	lysis
UniRef90	UHGV-0281248_3	UniRef90_R6JQI4	152.0	0	Holin SPP1 family	N/A
eggNOG-mapper	UHGV-0281248_3	1121344.JHZO01000003_gene952	80.9	7.24e-19	SPP1 phage holin	N/A
Pfam	UHGV-0281248_3	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0281248_3	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0281248_3	PF04688	N/A	N/A	N/A	N/A
PHROG	UHGV-0281248_4	phrog_4105	79.7	2.8e-23	N/A	unknown function
eggNOG-mapper	UHGV-0281248_4	397288.C806_00056	90.9	4.18e-22	N/A	N/A
UniRef90	UHGV-0281248_5	UniRef90_R6J123	115.0	1.51e-32	ATP synthase B chain	N/A
KOfam	UHGV-0281248_6	K24248	65.6	5e-19	EMID1; EMI domain-containing protein 1	N/A
PHROG	UHGV-0281248_6	phrog_5073	47.3	0.000000000000024	tail fiber protein	tail
UniRef90	UHGV-0281248_6	UniRef90_R6ISY1	360.0	0	Extracellular nuclease	N/A
eggNOG-mapper	UHGV-0281248_6	2754.EH55_03895	60.5	0.0000009	alpha-ribazole phosphatase activity	N/A
Pfam	UHGV-0281248_6	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0281248_6	COG0406	N/A	N/A	Broad specificity phosphatase PhoE	N/A
PHROG	UHGV-0281248_7	phrog_22978	4880.9	0	N/A	unknown function
UniRef90	UHGV-0281248_7	UniRef90_R6ILN9	5907.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0281248_7	1410650.JHWL01000003_gene2814	100.0	9.11e-18	N/A	N/A
Pfam	UHGV-0281248_7	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
Pfam	UHGV-0281248_7	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
PHROG	UHGV-0281248_11	phrog_511	377.0	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0281248_11	1410650.JHWL01000003_gene2827	244.0	0	N/A	N/A
structural_annotation	UHGV-0281248_11	PF11134,MF_01605,NF038128,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0281248_12	phrog_12105	149.4	1.12104e-44	N/A	unknown function
eggNOG-mapper	UHGV-0281248_12	1519439.JPJG01000060_gene1891	59.3	0.00000000132	N/A	N/A
PHROG	UHGV-0281248_14	phrog_1357	256.3	0	major head protein	head and packaging
UniRef90	UHGV-0281248_14	UniRef90_A0A1I0BH03	301.0	0	Major capsid protein, N4-gp56 family	N/A
eggNOG-mapper	UHGV-0281248_14	748224.HMPREF9436_02545	268.0	0	N/A	N/A
Pfam	UHGV-0281248_14	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0281248_14	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0281248_14	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0281248_15	phrog_13908	382.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0281248_15	1410650.JHWL01000003_gene2831	108.0	1.41e-24	N/A	N/A
PHROG	UHGV-0281248_16	phrog_156	293.1	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0281248_16	1410650.JHWL01000003_gene2833	500.0	0	N/A	N/A
structural_annotation	UHGV-0281248_16	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0281248_17	K06909	152.7	2.8026e-45	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0281248_17	phrog_979	162.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0281248_17	UniRef90_R6IPR7	982.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0281248_17	1410650.JHWL01000003_gene2834	530.0	0	N/A	N/A
Pfam	UHGV-0281248_17	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0281248_17	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0281248_17	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0281248_18	phrog_1206	46.9	0.0000000000000011	terminase small subunit	head and packaging
KOfam	UHGV-0281248_20	K01520	145.4	4.30199e-43	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0281248_20	phrog_135	123.9	1.1e-36	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0281248_20	UniRef90_R6ILQ3	244.0	0	Deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-0281248_20	1282887.AUJG01000016_gene1113	147.0	8.04345e-43	N/A	N/A
Pfam	UHGV-0281248_20	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0281248_20	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0281248_20	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0281248_20	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
UniRef90	UHGV-0281248_24	UniRef90_UPI000288284D	50.1	0.0000054	N/A	N/A
Pfam	UHGV-0281248_24	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0281248_24	NF037951	N/A	N/A	N/A	N/A
KOfam	UHGV-0281248_28	K01160	57.5	3.9e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0281248_28	phrog_140	129.5	1.8e-38	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0281248_28	UniRef90_A0A0L0WED4	131.0	1.54e-36	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0281248_28	1123263.AUKY01000072_gene2102	122.0	1.46e-33	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0281248_28	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0281248_28	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0281248_28	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0281248_30	phrog_2514	89.9	2.8e-26	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0281248_30	428127.EUBDOL_01512	114.0	1.32e-27	DnaD domain protein	N/A
COG	UHGV-0281248_30	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0281248_30	PF12793,NF033788,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0281248_31	K03111	143.0	3.30006e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0281248_31	phrog_44	143.0	1.80067e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0281248_31	UniRef90_R6JMM3	253.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0281248_31	718252.FP2_06770	159.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0281248_31	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0281248_31	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0281248_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0281248_31	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0281248_31	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0281248_32	phrog_7566	118.1	3e-35	N/A	unknown function
UniRef90	UHGV-0281248_32	UniRef90_A0A8D9UHC0	70.5	0.0000000000000638	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0281248_32	1007096.BAGW01000031_gene114	88.6	1.4e-21	N/A	N/A
PHROG	UHGV-0281248_33	phrog_72	75.1	8.9e-22	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0281248_33	UniRef90_UPI001F3F3E5C	121.0	1.02e-31	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0281248_33	445972.ANACOL_01825	101.0	8.65e-25	N/A	N/A
structural_annotation	UHGV-0281248_33	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0281248_34	phrog_7838	225.1	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0281248_34	UniRef90_A0A8D9UGW3	200.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0281248_34	742767.HMPREF9456_02052	164.0	0	N/A	N/A
structural_annotation	UHGV-0281248_34	PF04098,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0281248_35	phrog_253	125.5	3.6e-37	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0281248_35	UniRef90_R6J0Q7	287.0	0	N/A	N/A
eggNOG-mapper	UHGV-0281248_35	1227360.C176_12583	89.4	2.15e-20	Siphovirus Gp157	N/A
Pfam	UHGV-0281248_35	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0281248_35	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0281248_39	phrog_33952	212.1	0	N/A	unknown function
KOfam	UHGV-0281248_40	K21919	113.0	2.6e-33	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-0281248_40	phrog_923	105.9	2.5e-31	N/A	unknown function
UniRef90	UHGV-0281248_40	UniRef90_UPI001031ED10	113.0	2.88e-27	pentapeptide repeat-containing protein	N/A
eggNOG-mapper	UHGV-0281248_40	1232443.BAIA02000078_gene49	117.0	4.92e-30	Pentapeptide repeat protein	N/A
Pfam	UHGV-0281248_40	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
Pfam	UHGV-0281248_40	PF19062	N/A	N/A	N/A	DUF5758
COG	UHGV-0281248_40	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0281248_40	PF19062,PF13599,NF000139	N/A	N/A	N/A	N/A
PHROG	UHGV-0281248_41	phrog_26314	117.8	2.7e-35	N/A	unknown function
UniRef90	UHGV-0281248_42	UniRef90_R6JMN3	137.0	3.67e-41	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0281248_42	445974.CLORAM_02965	61.2	0.0000000000113	N/A	N/A
structural_annotation	UHGV-0281248_42	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0281248_43	K01356	110.4	2.9e-32	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0281248_43	phrog_4	137.5	1.10001e-40	transcriptional repressor	transcription regulation
UniRef90	UHGV-0281248_43	UniRef90_A0A6N9NXR9	252.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0281248_43	796940.HMPREF9628_00178	153.0	4.06377e-44	Peptidase S24-like	N/A
Pfam	UHGV-0281248_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0281248_43	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0281248_43	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0281248_43	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0281248_44	756499.Desde_3141	59.3	0.000000131	Bacterial Ig-like domain 2	N/A
NCBIFam	UHGV-0281248_44	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-0281248_44	COG5492	N/A	N/A	N/A	N/A
KOfam	UHGV-0281248_47	K06400	338.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0281248_47	phrog_95	337.5	0	integrase	integration and excision
UniRef90	UHGV-0281248_47	UniRef90_A0A1Q6LBY2	860.0	0	Recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0281248_47	537013.CLOSTMETH_01697	419.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0281248_47	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0281248_47	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0281248_47	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0281248_47	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0281248_47	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0281248	Yes	38,733	51	100	1
UHGV-1665695	No	18,574	50	47	1