vOTU vOTU-050030

vOTU: vOTU-050030

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-050030
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-01831 → vGENUS-05931 → vSUBGEN-19389 → vOTU-050030
Host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Eggerthellaceae → CAG-1427 → CAG-1427 sp000436075
Host range breadth	Species
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0282639
Biosample ID	N/A
Genome length (bp)	37,670 bps
CheckV completeness	100.00% (Complete)
CDS count	58
CDS density	89.81%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Eggerthellaceae → CAG-1427 → CAG-1427 sp000436075	Total connections	29	Host agreement	89.66
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0282639_1	UniRef90_UPI0009319352	238.0	0	NYN domain-containing protein	N/A
Pfam	UHGV-0282639_1	PF01936	N/A	N/A	NYN domain	NYN
COG	UHGV-0282639_1	COG1432	N/A	N/A	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	N/A
KOfam	UHGV-0282639_2	K14059	91.7	5.1e-37	int; integrase	N/A
PHROG	UHGV-0282639_2	phrog_1	77.2	3.8e-27	integrase	integration and excision
UniRef90	UHGV-0282639_2	UniRef90_A0A2K2UBR2	252.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0282639_2	68260.JOAY01000071_gene1467	62.4	0.0000000792	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0282639_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0282639_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0282639_2	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0282639_3	K07741	98.4	1.6e-28	antB; anti-repressor protein	N/A
PHROG	UHGV-0282639_3	phrog_130	198.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0282639_3	UniRef90_UPI000BFC71EB	247.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0282639_3	1462526.BN990_01804	225.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0282639_3	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0282639_3	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0282639_3	COG3617	N/A	N/A	Prophage antirepressor	N/A
KOfam	UHGV-0282639_5	K01447	79.6	5.4e-23	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0282639_5	phrog_1794	105.8	1.4e-38	amidase	lysis
UniRef90	UHGV-0282639_5	UniRef90_A0A3N0I9E4	236.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0282639_5	35760.BCHO_0821	152.0	1.98998e-41	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0282639_5	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0282639_5	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0282639_5	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0282639_5	PF01510,MF_04111,NF008758,NF040675,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0282639_6	phrog_881	66.7	2.3e-19	holin	lysis
UniRef90	UHGV-0282639_6	UniRef90_A0A0L0LSX1	73.6	0.00000000000000119	Holin	N/A
eggNOG-mapper	UHGV-0282639_6	1504822.CCNO01000015_gene626	61.2	0.0000000000136	Putative phage holin Dp-1	N/A
Pfam	UHGV-0282639_6	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0282639_6	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0282639_7	phrog_4105	68.1	1.1e-19	N/A	unknown function
UniRef90	UHGV-0282639_7	UniRef90_A0A087A0L5	71.2	0.0000000000000678	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-0282639_7	218140.BPSY_0948	95.5	3.28e-24	N/A	N/A
structural_annotation	UHGV-0282639_8	PF18573,NF033147	N/A	N/A	N/A	N/A
KOfam	UHGV-0282639_10	K07776	181.0	0	regX3; two-component system, OmpR family, response regulator RegX3	N/A
PHROG	UHGV-0282639_10	phrog_731	166.2	0	N/A	unknown function
UniRef90	UHGV-0282639_10	UniRef90_A0A7Y4RMG7	136.0	2.33e-36	Response regulator transcription factor	N/A
eggNOG-mapper	UHGV-0282639_10	1120971.AUCA01000001_gene1688	129.0	2.53e-34	COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	N/A
Pfam	UHGV-0282639_10	PF00072	N/A	N/A	Response regulator receiver domain	Response_reg
Pfam	UHGV-0282639_10	PF00486	N/A	N/A	Transcriptional regulatory protein, C terminal	Trans_reg_C
COG	UHGV-0282639_10	COG0745	N/A	N/A	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	N/A
structural_annotation	UHGV-0282639_10	PF00072,PF00486,MF_00981,NF000401,COG0745	N/A	N/A	N/A	N/A
PHROG	UHGV-0282639_11	phrog_13141	130.9	3.6e-39	N/A	unknown function
UniRef90	UHGV-0282639_11	UniRef90_A0A7K3I4P1	102.0	3.2e-22	H_lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-0282639_11	1256908.HMPREF0373_00465	78.6	0.0000000000000421	N/A	N/A
PHROG	UHGV-0282639_12	phrog_538	138.4	3.69999e-41	minor tail protein	tail
UniRef90	UHGV-0282639_12	UniRef90_A0A087E4D2	204.0	0	Phage head fiber protein	N/A
eggNOG-mapper	UHGV-0282639_12	469378.Ccur_02640	183.0	0	N/A	N/A
Pfam	UHGV-0282639_12	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0282639_12	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0282639_13	UniRef90_A0A7Y0EUM5	123.0	6.81e-30	Tail fiber protein	N/A
eggNOG-mapper	UHGV-0282639_13	1111121.HMPREF1247_0852	175.0	0	N/A	N/A
structural_annotation	UHGV-0282639_13	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0282639_14	phrog_1686	221.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0282639_14	UniRef90_UPI0013ED7B29	571.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0282639_14	1437608.BBIA_2143	223.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-0282639_14	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0282639_14	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0282639_14	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0282639_14	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0282639_15	phrog_706	129.0	3.1e-38	N/A	unknown function
UniRef90	UHGV-0282639_15	UniRef90_UPI0009B9DB3F	146.0	8.38005e-41	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0282639_15	1395513.P343_12620	64.3	0.000000000506	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0282639_15	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0282639_15	PF06854	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0282639_16	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0282639_17	phrog_3099	41.3	0.000000000023	N/A	unknown function
structural_annotation	UHGV-0282639_17	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0282639_18	PF20765,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0282639_19	phrog_556	73.2	3e-21	minor head protein	head and packaging
UniRef90	UHGV-0282639_19	UniRef90_UPI000F7A81E3	73.6	0.0000000000000143	minor capsid protein	N/A
eggNOG-mapper	UHGV-0282639_19	1134413.ANNK01000120_gene2022	51.6	0.000000933	Minor capsid protein	N/A
Pfam	UHGV-0282639_19	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0282639_19	PF11114,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0282639_20	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0282639_21	445975.COLSTE_01109	53.1	0.00000017	N/A	N/A
PHROG	UHGV-0282639_22	phrog_544	191.5	0	major head protein	head and packaging
UniRef90	UHGV-0282639_22	UniRef90_A0A810PZM2	277.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0282639_22	936154.STP_1268	218.0	0	N/A	N/A
structural_annotation	UHGV-0282639_22	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0282639_23	phrog_194	58.0	2e-16	head scaffolding protein	head and packaging
Pfam	UHGV-0282639_23	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0282639_23	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0282639_24	phrog_585	74.8	8.6e-22	N/A	unknown function
UniRef90	UHGV-0282639_24	UniRef90_UPI000F53A435	88.2	3.84e-20	N/A	N/A
eggNOG-mapper	UHGV-0282639_24	1437610.BREU_1386	77.4	1.31e-16	N/A	N/A
Pfam	UHGV-0282639_24	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-0282639_24	PF10711,TIGR03433,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-0282639_26	phrog_581	188.6	0	minor head protein	head and packaging
UniRef90	UHGV-0282639_26	UniRef90_A0A5K1IK12	257.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0282639_26	1111121.HMPREF1247_0842	239.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0282639_26	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0282639_26	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0282639_27	phrog_533	207.1	0	portal protein	head and packaging
UniRef90	UHGV-0282639_27	UniRef90_UPI00189938B4	256.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0282639_27	1232436.CAPF01000009_gene1765	229.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0282639_27	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0282639_28	K06909	279.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0282639_28	phrog_3717	117.7	8.4e-35	terminase large subunit	head and packaging
UniRef90	UHGV-0282639_28	UniRef90_A0A1Y4G845	534.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0282639_28	1273103.NM10_06806	288.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0282639_28	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0282639_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
PHROG	UHGV-0282639_29	phrog_21498	215.8	0	N/A	unknown function
UniRef90	UHGV-0282639_29	UniRef90_C7MM70	214.0	0	ParB-like nuclease	N/A
eggNOG-mapper	UHGV-0282639_29	469378.Ccur_02830	214.0	0	DNA binding	N/A
COG	UHGV-0282639_29	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
KOfam	UHGV-0282639_36	K01520	77.2	1.9e-22	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0282639_36	phrog_135	79.8	2.6e-23	dUTPase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0282639_36	1007096.BAGW01000014_gene1238	122.0	2.66e-31	dUTPase	N/A
Pfam	UHGV-0282639_36	PF00692	N/A	N/A	dUTPase	dUTPase
COG	UHGV-0282639_36	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
PHROG	UHGV-0282639_37	phrog_2164	57.0	3e-16	N/A	unknown function
structural_annotation	UHGV-0282639_41	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-0282639_42	phrog_15768	52.4	0.000000000000011	N/A	unknown function
Pfam	UHGV-0282639_42	PF19808	N/A	N/A	N/A	DUF6291
KOfam	UHGV-0282639_45	K03111	135.6	5.5e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0282639_45	phrog_44	133.9	1.1e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0282639_45	UniRef90_R7ANG4	235.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0282639_45	742818.HMPREF9451_01652	234.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0282639_45	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0282639_45	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0282639_45	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0282639_45	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0282639_45	PF00436,MF_00984,NF005406,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0282639_46	phrog_59	152.7	1.4013e-45	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0282639_46	UniRef90_A0A1H8PXJ4	131.0	1.24e-35	NUMOD4 motif-containing protein	N/A
eggNOG-mapper	UHGV-0282639_46	1229751.R9QM99_9CAUD	103.0	1.62e-25	HNH endonuclease	N/A
PADLOC	UHGV-0282639_46	HEase_00016	70.7	3.2e-20	homing endonuclease	RM
Pfam	UHGV-0282639_46	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0282639_46	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0282639_46	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0282639_48	phrog_561	105.0	3.8e-32	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0282639_48	UniRef90_A0A554SP13	197.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-0282639_48	1111121.HMPREF1247_0809	192.0	0	N/A	N/A
UniRef90	UHGV-0282639_49	UniRef90_A0A8B0GPV3	107.0	1.55e-23	N/A	N/A
eggNOG-mapper	UHGV-0282639_49	469378.Ccur_02980	91.7	2e-18	N/A	N/A
Pfam	UHGV-0282639_49	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0282639_49	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-0282639_50	K03497	75.6	1e-21	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0282639_50	phrog_18056	152.8	1.4013e-45	ParB-like partition nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0282639_50	UniRef90_A0A369MN63	193.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0282639_50	1121866.AUGK01000014_gene2072	99.8	4.14e-20	chromosome segregation	N/A
Pfam	UHGV-0282639_50	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0282639_50	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0282639_50	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0282639_52	445975.COLSTE_02541	76.6	0.00000000000000499	N/A	N/A
KOfam	UHGV-0282639_53	K01160	40.8	0.000000000056	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0282639_53	phrog_1682	75.7	6.1e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0282639_53	UniRef90_R7CCV4	169.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0282639_53	1226322.HMPREF1545_04070	93.6	6.95e-23	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0282639_53	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0282639_53	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
Pfam	UHGV-0282639_55	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0282639_55	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
KOfam	UHGV-0282639_57	K01356	88.1	1.8e-25	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0282639_57	phrog_4	96.4	4.1e-28	transcriptional repressor	transcription regulation
UniRef90	UHGV-0282639_57	UniRef90_A0A1Q6E4H7	274.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0282639_57	268407.PWYN_03190	112.0	3.88e-28	Peptidase S24-like	N/A
Pfam	UHGV-0282639_57	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
Pfam	UHGV-0282639_57	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0282639_57	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0282639_57	PF00717,PF12844,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0282639	Yes	37,670	62	100	1