vOTU vOTU-050309

vOTU: vOTU-050309

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-050309
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00124 → vGENUS-00131 → vSUBGEN-42104 → vOTU-050309
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0303151
Biosample ID	SAMEA3444265
Genome length (bp)	41,184 bps
CheckV completeness	100.00% (Complete)
CDS count	64
CDS density	91.27%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	412	Host agreement	98.06
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0303151_2	phrog_3136	154.2	0	N/A	unknown function
UniRef90	UHGV-0303151_2	UniRef90_UPI001CBCD733	181.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0303151_2	693746.OBV_25380	65.5	0.000000000153	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0303151_2	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0303151_2	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0303151_5	PF04545	N/A	N/A	N/A	N/A
KOfam	UHGV-0303151_6	K03497	94.7	1.8e-27	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0303151_6	phrog_4715	117.7	7.8e-35	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0303151_6	UniRef90_A0A2A7B6Q0	312.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0303151_6	411471.SUBVAR_05842	184.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0303151_6	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0303151_6	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0303151_6	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
UniRef90	UHGV-0303151_7	UniRef90_A0A355JDC2	107.0	1.28e-26	N/A	N/A
KOfam	UHGV-0303151_8	K03496	207.4	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0303151_8	phrog_164	155.3	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0303151_8	UniRef90_A0A2A7B6H3	360.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0303151_8	411471.SUBVAR_05839	228.0	0	AAA domain	N/A
Pfam	UHGV-0303151_8	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0303151_8	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0303151_8	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-0303151_9	phrog_6969	51.6	0.0000000000000088	N/A	unknown function
eggNOG-mapper	UHGV-0303151_9	748224.HMPREF9436_00735	152.0	1.35996e-41	N/A	N/A
Pfam	UHGV-0303151_9	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
Pfam	UHGV-0303151_9	PF19481	N/A	N/A	N/A	DUF6017
COG	UHGV-0303151_9	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0303151_9	PF19481,PF01978,MF_01819,TIGR01610,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0303151_10	K03111	146.3	3.19496e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0303151_10	phrog_44	149.1	2.38221e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0303151_10	UniRef90_A0A2A7ALU9	199.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0303151_10	748224.HMPREF9436_00638	205.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0303151_10	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0303151_10	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0303151_10	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0303151_10	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0303151_10	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0303151_11	phrog_7566	86.9	1.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-0303151_11	411471.SUBVAR_05830	105.0	2.25e-28	N/A	N/A
PHROG	UHGV-0303151_12	phrog_72	46.8	0.00000000000057	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0303151_12	411471.SUBVAR_05829	135.0	5.88e-38	N/A	N/A
structural_annotation	UHGV-0303151_12	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0303151_13	phrog_14970	45.6	0.0000000000014	N/A	unknown function
COG	UHGV-0303151_13	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0303151_13	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0303151_17	PF10346,MF_00337,NF010671	N/A	N/A	N/A	N/A
UniRef90	UHGV-0303151_24	UniRef90_UPI000BEF0F65	70.9	0.00000000000000636	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-0303151_24	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0303151_25	phrog_8	43.5	0.0000000000074	transcriptional regulator	transcription regulation
UniRef90	UHGV-0303151_25	UniRef90_A0A2A7AM72	130.0	3.98e-37	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0303151_25	1378168.N510_01712	70.5	0.000000000000398	N/A	N/A
Pfam	UHGV-0303151_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0303151_25	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0303151_26	PF21441,TIGR04176,COG1846	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0303151_29	COG5342	N/A	N/A	N/A	N/A
PHROG	UHGV-0303151_32	phrog_1373	41.0	0.000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-0303151_32	UniRef90_A0A2A7AM70	186.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0303151_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0303151_32	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0303151_32	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0303151_33	K14059	180.6	0	int; integrase	N/A
PHROG	UHGV-0303151_33	phrog_1	167.1	0	integrase	integration and excision
UniRef90	UHGV-0303151_33	UniRef90_A0A367GI93	222.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0303151_33	1507.HMPREF0262_00307	162.0	9.24857e-44	Phage integrase family	N/A
Pfam	UHGV-0303151_33	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0303151_33	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0303151_33	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0303151_34	1408437.JNJN01000043_gene801	94.4	3.43e-21	N/A	N/A
eggNOG-mapper	UHGV-0303151_35	1408437.JNJN01000043_gene802	121.0	6.41e-34	N/A	N/A
PHROG	UHGV-0303151_36	phrog_16490	101.0	3.6e-39	N/A	unknown function
eggNOG-mapper	UHGV-0303151_36	1408437.JNJN01000043_gene803	157.0	4.62428e-44	N/A	N/A
UniRef90	UHGV-0303151_39	UniRef90_A0A1Y3R5J8	48.9	0.00000264	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0303151_39	1160721.RBI_I00206	58.5	0.0000000000724	N/A	N/A
Pfam	UHGV-0303151_39	PF09274	N/A	N/A	ParG	ParG
structural_annotation	UHGV-0303151_39	PF10723	N/A	N/A	N/A	N/A
PHROG	UHGV-0303151_42	phrog_918	98.4	4e-29	N/A	unknown function
UniRef90	UHGV-0303151_42	UniRef90_UPI000EC62F11	181.0	0	N/A	N/A
eggNOG-mapper	UHGV-0303151_42	1256908.HMPREF0373_00480	139.0	6.35068e-42	N/A	N/A
Pfam	UHGV-0303151_42	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0303151_42	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0303151_43	phrog_15303	83.2	2.5e-24	N/A	unknown function
PHROG	UHGV-0303151_44	phrog_1863	76.5	1.9e-22	N/A	unknown function
eggNOG-mapper	UHGV-0303151_44	718252.FP2_04900	150.0	0	N/A	N/A
KOfam	UHGV-0303151_45	K07273	168.6	0	acm; lysozyme	N/A
PHROG	UHGV-0303151_45	phrog_291	128.3	8e-38	endolysin	lysis
UniRef90	UHGV-0303151_45	UniRef90_UPI001D0EE7D8	297.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0303151_45	748224.HMPREF9436_00154	281.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0303151_45	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0303151_45	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0303151_45	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0303151_46	phrog_23037	291.4	0	N/A	unknown function
UniRef90	UHGV-0303151_46	UniRef90_UPI001431C045	251.0	0	BNR repeat-containing protein	N/A
eggNOG-mapper	UHGV-0303151_46	571.MC52_20585	207.0	0	unsaturated chondroitin disaccharide hydrolase activity	N/A
Pfam	UHGV-0303151_46	PF15892	N/A	N/A	BNR repeat-containing family member	BNR_4
COG	UHGV-0303151_46	COG4225	N/A	N/A	Rhamnogalacturonyl hydrolase YesR	N/A
PHROG	UHGV-0303151_48	phrog_1067	173.0	0	minor head protein	head and packaging
UniRef90	UHGV-0303151_48	UniRef90_A0A2A7AM44	706.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0303151_48	1123263.AUKY01000068_gene489	192.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0303151_48	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0303151_48	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0303151_48	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0303151_48	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0303151_49	phrog_33	72.7	9.2e-21	distal tail protein Dit	tail
UniRef90	UHGV-0303151_49	UniRef90_A0A173Z1X4	134.0	5.26e-35	Phage-related protein	N/A
eggNOG-mapper	UHGV-0303151_49	1487921.DP68_11370	84.7	5.2e-17	tail component	N/A
NCBIFam	UHGV-0303151_49	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0303151_49	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0303151_49	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0303151_50	phrog_9959	87.0	1.2e-25	tail length tape measure protein	tail
UniRef90	UHGV-0303151_50	UniRef90_A0A2A7ALS3	820.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0303151_50	1123488.ATUF01000005_gene1400	158.0	8.83e-37	tape measure	N/A
Pfam	UHGV-0303151_50	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0303151_50	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0303151_50	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0303151_50	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0303151_53	phrog_88	92.8	4.1e-27	major tail protein	tail
UniRef90	UHGV-0303151_53	UniRef90_G9YSC5	106.0	3.51e-25	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0303151_53	33035.JPJF01000039_gene278	73.6	0.000000000000201	N/A	N/A
NCBIFam	UHGV-0303151_53	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0303151_53	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0303151_54	phrog_5	48.6	0.00000000000014	tail completion or Neck1 protein	connector
UniRef90	UHGV-0303151_54	UniRef90_A0A1C6FG30	131.0	7.31e-36	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0303151_54	908340.HMPREF9406_2573	110.0	2.01e-28	N/A	N/A
structural_annotation	UHGV-0303151_54	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0303151_55	999413.HMPREF1094_02005	70.1	0.0000000000000354	N/A	N/A
structural_annotation	UHGV-0303151_55	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0303151_56	phrog_19734	93.1	2.8e-27	N/A	unknown function
UniRef90	UHGV-0303151_56	UniRef90_A0A0D8I708	79.0	2.66e-16	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0303151_56	349161.Dred_2602	73.9	0.00000000000000388	N/A	N/A
structural_annotation	UHGV-0303151_56	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0303151_57	phrog_749	54.2	0.0000000000000024	N/A	unknown function
eggNOG-mapper	UHGV-0303151_57	1211817.CCAT010000053_gene2133	60.5	0.000000000197	N/A	N/A
PHROG	UHGV-0303151_58	phrog_10	128.3	5.2e-38	major head protein	head and packaging
UniRef90	UHGV-0303151_58	UniRef90_A0A2A7B712	701.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0303151_58	1235792.C808_00086	438.0	0	Phage capsid family	N/A
Pfam	UHGV-0303151_58	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0303151_58	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0303151_58	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0303151_58	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0303151_58	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0303151_59	K01358	79.8	4.6e-23	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0303151_59	phrog_94	129.9	3e-38	head maturation protease	head and packaging
UniRef90	UHGV-0303151_59	UniRef90_UPI00111E41DA	143.0	8.73e-39	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0303151_59	1232452.BAIB02000007_gene1626	134.0	7.26e-36	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0303151_59	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0303151_59	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0303151_59	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0303151_60	phrog_12	123.6	1.6e-36	portal protein	head and packaging
UniRef90	UHGV-0303151_60	UniRef90_A0A2A7B6S8	552.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0303151_60	349161.Dred_2606	258.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0303151_60	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0303151_60	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0303151_60	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0303151_60	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0303151_61	phrog_9	242.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0303151_61	UniRef90_A0A2A7ALT4	1061.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0303151_61	610130.Closa_0741	635.0	0	Phage Terminase	N/A
Pfam	UHGV-0303151_61	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0303151_61	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0303151_61	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0303151_62	phrog_13845	56.2	4.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0303151_62	1399942.U3PDR2_9CAUD	66.2	0.00000000000226	N/A	N/A
structural_annotation	UHGV-0303151_62	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0303151_63	phrog_119	58.6	1e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0303151_63	UniRef90_A0A2A7B6I3	227.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0303151_63	610130.Closa_0739	110.0	1.1e-29	HNH nucleases	N/A
Pfam	UHGV-0303151_63	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0303151_63	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0303151	Yes	41,184	52	100	1
UHGV-1493002	No	25,749	51	63	1
UHGV-1870137	No	17,760	52	43	1