vOTU vOTU-050438

vOTU: vOTU-050438

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-050438
Number of genomes	7
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00513 → vGENUS-00603 → vSUBGEN-02239 → vOTU-050438
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272 → Flemingibacterium → Flemingibacterium sp900546315
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0312578
Biosample ID	SAMEA4813773
Genome length (bp)	46,495 bps
CheckV completeness	100.00% (Complete)
CDS count	80
CDS density	90.21%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272 → Flemingibacterium → Flemingibacterium sp900546315	Total connections	5	Host agreement	80
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0312578_2	K02316	80.8	2.1e-23	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0312578_2	phrog_11992	89.2	6.1e-26	N/A	unknown function
UniRef90	UHGV-0312578_2	UniRef90_A0A845N2C1	88.6	2.52e-18	DNA primase	N/A
eggNOG-mapper	UHGV-0312578_2	718252.FP2_18240	89.4	2.15e-19	CHC2 zinc finger	N/A
PADLOC	UHGV-0312578_2	drt-cluster192	60.7	3.6e-17	DRT	DRT
Pfam	UHGV-0312578_2	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0312578_2	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0312578_2	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-0312578_4	phrog_3490	120.7	1.1e-35	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0312578_4	UniRef90_A0A1C6FNL5	164.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0312578_4	357809.Cphy_2986	145.0	2.14959e-42	N/A	N/A
Pfam	UHGV-0312578_4	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0312578_4	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0312578_5	K03111	110.7	2.4e-32	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0312578_5	phrog_44	114.3	1.3e-33	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0312578_5	UniRef90_A0A2U1BEJ1	132.0	7.88e-37	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0312578_5	665956.HMPREF1032_00430	98.2	5.28e-24	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0312578_5	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0312578_5	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0312578_5	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0312578_5	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0312578_5	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0312578_6	phrog_3657	352.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0312578_6	1567013.A0A0A7S0A9_9CAUD	229.0	0	N/A	N/A
KOfam	UHGV-0312578_8	K10906	87.3	2.5e-29	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	N/A
PHROG	UHGV-0312578_8	phrog_412	230.3	0	exonuclease VIII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0312578_8	UniRef90_A0A1C6GFL6	250.0	0	Exodeoxyribonuclease 8	N/A
eggNOG-mapper	UHGV-0312578_8	1454004.AW11_02382	197.0	0	N/A	N/A
Pfam	UHGV-0312578_8	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0312578_8	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0312578_8	PF12684,MF_03030,TIGR01896,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0312578_15	phrog_1374	47.8	0.00000000000019	N/A	unknown function
eggNOG-mapper	UHGV-0312578_15	33876.JNXY01000004_gene1766	55.5	0.00000000158	Transmembrane Fragile-X-F protein	N/A
structural_annotation	UHGV-0312578_16	COG3460	N/A	N/A	N/A	N/A
PHROG	UHGV-0312578_21	phrog_799	191.8	0	DNA methyltransferase	other
UniRef90	UHGV-0312578_21	UniRef90_A0A373KMH1	250.0	0	NAD(P)-dependent oxidoreductase	N/A
eggNOG-mapper	UHGV-0312578_21	1231377.C426_1976	229.0	0	DNA restriction-modification system	N/A
COG	UHGV-0312578_21	COG0827	N/A	N/A	Adenine-specific DNA N6-methylase	N/A
structural_annotation	UHGV-0312578_21	PF19587,MF_01872,NF011489,COG0286	N/A	N/A	N/A	N/A
UniRef90	UHGV-0312578_22	UniRef90_A0A3A9ES11	58.9	0.000000000234	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0312578_22	657322.FPR_26610	69.7	0.000000000000234	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0312578_22	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0312578_23	phrog_474	122.4	5.4e-36	phosphofructokinase	other
UniRef90	UHGV-0312578_23	UniRef90_UPI001E4DA4BC	107.0	4.57e-26	N/A	N/A
eggNOG-mapper	UHGV-0312578_23	428125.CLOLEP_01367	105.0	1.56e-27	N/A	N/A
Pfam	UHGV-0312578_23	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0312578_23	PF19905	N/A	N/A	N/A	N/A
PHROG	UHGV-0312578_25	phrog_323	41.7	5e-21	endonuclease	DNA, RNA and nucleotide metabolism
dbAPIS	UHGV-0312578_25	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-0312578_25	PF01710,NF040595,COG3415	N/A	N/A	N/A	N/A
Pfam	UHGV-0312578_26	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-0312578_31	PF21291,NF041951,COG1513	N/A	N/A	N/A	N/A
KOfam	UHGV-0312578_35	K22300	41.8	0.000000000021	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0312578_35	phrog_8	40.8	0.000000000046	transcriptional regulator	transcription regulation
UniRef90	UHGV-0312578_35	UniRef90_A0A2Z5YXK7	58.9	0.0000000092	Transcriptional regulator	N/A
COG	UHGV-0312578_35	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0312578_35	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
Pfam	UHGV-0312578_38	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0312578_38	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0312578_39	K14059	185.1	0	int; integrase	N/A
PHROG	UHGV-0312578_39	phrog_1	165.5	0	integrase	integration and excision
UniRef90	UHGV-0312578_39	UniRef90_A0A328U998	193.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0312578_39	1226322.HMPREF1545_00144	172.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0312578_39	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0312578_39	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0312578_39	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0312578_39	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0312578_40	PF16734,PF01402	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0312578_41	1408324.JNJK01000028_gene1590	80.9	0.00000000000000193	N/A	N/A
structural_annotation	UHGV-0312578_43	PF02255,TIGR00823,COG1447	N/A	N/A	N/A	N/A
UniRef90	UHGV-0312578_46	UniRef90_A0A843IZ65	63.5	0.0000000000091	Sigma70_r4 domain-containing protein	N/A
structural_annotation	UHGV-0312578_46	PF04545,MF_00245,NF001074,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0312578_47	phrog_6918	60.3	2.7e-17	holin	lysis
UniRef90	UHGV-0312578_47	UniRef90_G9YP36	56.2	0.0000000796	Phage holin, LL-H family	N/A
eggNOG-mapper	UHGV-0312578_47	1203606.HMPREF1526_01929	55.8	0.0000000161	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0312578_47	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0312578_47	PF09682,TIGR01673	N/A	N/A	N/A	N/A
KOfam	UHGV-0312578_48	K07273	167.0	0	acm; lysozyme	N/A
PHROG	UHGV-0312578_48	phrog_291	144.9	6.50202e-43	endolysin	lysis
UniRef90	UHGV-0312578_48	UniRef90_A0A1C6ACC3	161.0	3.78351e-44	Lysozyme M1	N/A
eggNOG-mapper	UHGV-0312578_48	411470.RUMGNA_03131	131.0	4.9e-34	Lysin motif	N/A
Pfam	UHGV-0312578_48	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0312578_48	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0312578_48	PF01183,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0312578_50	742733.HMPREF9469_05008	56.2	0.0000000365	N/A	N/A
PHROG	UHGV-0312578_51	phrog_13589	163.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0312578_51	428125.CLOLEP_01434	213.0	0	N/A	N/A
PHROG	UHGV-0312578_53	phrog_15594	92.6	2.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-0312578_53	1118055.CAGU01000013_gene763	68.6	0.0000000000000945	N/A	N/A
structural_annotation	UHGV-0312578_53	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0312578_54	phrog_4105	72.8	4.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0312578_54	397288.C806_00056	85.9	2.18e-20	N/A	N/A
PHROG	UHGV-0312578_55	phrog_18593	133.1	1.6e-39	N/A	unknown function
UniRef90	UHGV-0312578_55	UniRef90_A0A2Y9CAD1	173.0	0	Carbohydrate binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0312578_55	411460.RUMTOR_02099	143.0	9.21998e-41	N/A	N/A
Pfam	UHGV-0312578_55	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0312578_55	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0312578_57	phrog_2295	81.7	8.2e-24	N/A	unknown function
Pfam	UHGV-0312578_57	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
COG	UHGV-0312578_57	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0312578_57	PF12810,PF20944	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0312578_58	756499.Desde_2424	60.1	0.00000000445	N/A	N/A
PHROG	UHGV-0312578_59	phrog_13879	185.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0312578_59	411902.CLOBOL_00124	290.0	0	N/A	N/A
structural_annotation	UHGV-0312578_59	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0312578_60	phrog_1194	75.0	9e-22	N/A	unknown function
eggNOG-mapper	UHGV-0312578_60	1232449.BAHV02000010_gene2724	106.0	5.76e-28	N/A	N/A
structural_annotation	UHGV-0312578_60	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0312578_61	phrog_1535	96.2	6.2e-32	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0312578_61	1121866.AUGK01000003_gene1437	176.0	7.12e-42	phage tail tape measure protein	N/A
COG	UHGV-0312578_61	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
UniRef90	UHGV-0312578_63	UniRef90_UPI001D0975F6	66.2	0.00000000000943	N/A	N/A
PHROG	UHGV-0312578_64	phrog_158	51.3	0.000000000000021	major tail protein	tail
eggNOG-mapper	UHGV-0312578_64	469596.HMPREF9488_01310	112.0	2.48e-29	N/A	N/A
structural_annotation	UHGV-0312578_64	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0312578_65	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0312578_67	1298920.KI911353_gene2656	72.4	0.0000000000000131	N/A	N/A
UniRef90	UHGV-0312578_68	UniRef90_A0A1V5X694	100.0	2.41e-25	Phage gp6-like head-tail connector protein	N/A
structural_annotation	UHGV-0312578_68	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0312578_69	phrog_247	243.2	0	major head protein	head and packaging
UniRef90	UHGV-0312578_69	UniRef90_UPI000A1C9CC1	438.0	0	coat protein	N/A
eggNOG-mapper	UHGV-0312578_69	903814.ELI_3208	441.0	0	N/A	N/A
Pfam	UHGV-0312578_69	PF20036	N/A	N/A	Major capsid protein 13-like	Gp13-like
structural_annotation	UHGV-0312578_69	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0312578_70	UniRef90_A0A7C7EK05	62.0	0.000000014	N/A	N/A
structural_annotation	UHGV-0312578_70	PF14265	N/A	N/A	N/A	N/A
Pfam	UHGV-0312578_71	PF10122	N/A	N/A	N/A	Mu-like_Com
PHROG	UHGV-0312578_72	phrog_64	161.1	0	portal protein	head and packaging
UniRef90	UHGV-0312578_72	UniRef90_A0A7X9GQD9	385.0	0	Phage portal protein (Fragment)	N/A
eggNOG-mapper	UHGV-0312578_72	1121866.AUGK01000003_gene1429	360.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0312578_72	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0312578_72	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0312578_73	phrog_38	155.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0312578_73	UniRef90_A0A3D4KYF7	590.0	0	DOD-type homing endonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-0312578_73	1232453.BAIF02000058_gene1623	383.0	0	TIGRFAM Phage	N/A
COG	UHGV-0312578_73	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0312578_73	PF05203,PF17289,MF_04147,MF_01420,NF033889,NF007072,COG5362,COG1372	N/A	N/A	N/A	N/A
KOfam	UHGV-0312578_74	K06400	190.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0312578_74	phrog_95	177.9	0	integrase	integration and excision
UniRef90	UHGV-0312578_74	UniRef90_A0A3D4G6V8	379.0	0	Resolvase	N/A
eggNOG-mapper	UHGV-0312578_74	697329.Rumal_3466	219.0	0	resolvase	N/A
Pfam	UHGV-0312578_74	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0312578_74	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0312578_74	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0312578_74	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0312578_78	UniRef90_UPI001D07B715	94.0	4.58e-20	DNA-packaging protein	N/A
structural_annotation	UHGV-0312578_78	PF16677	N/A	N/A	N/A	N/A
UniRef90	UHGV-0312578_79	UniRef90_A0A3E3DHB1	69.7	0.000000000000145	Immunoglobulin	N/A
eggNOG-mapper	UHGV-0312578_79	1226325.HMPREF1548_01699	67.0	0.000000000000272	N/A	N/A
structural_annotation	UHGV-0312578_79	PF21076	N/A	N/A	N/A	N/A
PHROG	UHGV-0312578_80	phrog_8841	440.1	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0312578_80	UniRef90_A0A372V3W4	429.0	0	N/A	N/A
eggNOG-mapper	UHGV-0312578_80	742738.HMPREF9460_02495	377.0	0	N/A	N/A
Pfam	UHGV-0312578_80	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0312578_80	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0312578_80	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0312578_80	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0312578	Yes	46,495	56	100	1
UHGV-0619832	No	19,341	58	42	1
UHGV-1598742	No	16,789	57	36	1
UHGV-0236656	No	14,014	57	30	1
UHGV-0062712	No	10,391	57	23	1
UHGV-1712031	No	10,391	57	23	1
UHGV-1547700	No	10,177	57	22	1