vOTU vOTU-050535

vOTU: vOTU-050535

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-050535
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00153 → vSUBFAM-01424 → vGENUS-01899 → vSUBGEN-24100 → vOTU-050535
Host lineage	Bacteria → Bacteroidota → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola → Phocaeicola sp000434735
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0318993
Biosample ID	SAMN04613413
Genome length (bp)	47,001 bps
CheckV completeness	100.00% (Complete)
CDS count	53
CDS density	94.73%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Bacteroidota → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola → Phocaeicola sp000434735	Total connections	2	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0318993_1	phrog_918	106.1	1.4e-31	N/A	unknown function
UniRef90	UHGV-0318993_1	UniRef90_UPI00096A904F	118.0	4.48e-33	N/A	N/A
eggNOG-mapper	UHGV-0318993_1	1499683.CCFF01000014_gene3910	115.0	1.24e-32	N/A	N/A
Pfam	UHGV-0318993_1	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0318993_1	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0318993_4	phrog_3064	71.8	7.1e-21	terminase	head and packaging
UniRef90	UHGV-0318993_4	UniRef90_A0A2I7QK24	74.7	0.00000000000011	Coil containing protein (Fragment)	N/A
KOfam	UHGV-0318993_5	K21523	71.5	6e-21	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-0318993_5	phrog_2	100.3	3.1e-29	terminase large subunit	head and packaging
UniRef90	UHGV-0318993_5	UniRef90_UPI001F401ABC	399.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0318993_5	696281.Desru_1088	193.0	0	Phage terminase large subunit	N/A
COG	UHGV-0318993_5	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0318993_5	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-0318993_6	phrog_156	201.5	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0318993_6	1519439.JPJG01000060_gene1886	408.0	0	N/A	N/A
structural_annotation	UHGV-0318993_6	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0318993_8	phrog_22978	108.2	3e-32	N/A	unknown function
eggNOG-mapper	UHGV-0318993_8	1415780.JPOG01000001_gene1744	68.2	0.0000000778	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides	N/A
Pfam	UHGV-0318993_8	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
Pfam	UHGV-0318993_8	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
COG	UHGV-0318993_8	COG0454	N/A	N/A	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	N/A
PHROG	UHGV-0318993_13	phrog_24113	89.5	2.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-0318993_13	1226322.HMPREF1545_03847	72.0	0.0000000000000347	N/A	N/A
structural_annotation	UHGV-0318993_13	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0318993_14	phrog_371	69.9	3e-20	major head protein	head and packaging
eggNOG-mapper	UHGV-0318993_14	1226322.HMPREF1545_03848	133.0	3.12e-33	N/A	N/A
structural_annotation	UHGV-0318993_14	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0318993_15	PF20387,NF038128,COG5156	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0318993_16	1232449.BAHV02000016_gene1816	182.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0318993_16	PF11134,TIGR04312,COG3823	N/A	N/A	N/A	N/A
PHROG	UHGV-0318993_17	phrog_6468	63.0	2.3e-18	tail fiber protein; host specificity	tail
eggNOG-mapper	UHGV-0318993_17	272623.L77514	66.6	0.00000000134	N/A	N/A
KOfam	UHGV-0318993_18	K16617	41.7	0.0000000000062	COL13A; collagen type XIII alpha	N/A
PHROG	UHGV-0318993_18	phrog_32311	87.7	8e-26	N/A	unknown function
UniRef90	UHGV-0318993_18	UniRef90_UPI000E4B80F2	70.9	0.0000000000718	collagen-like protein	N/A
eggNOG-mapper	UHGV-0318993_18	33035.JPJF01000093_gene2235	90.1	4.86e-18	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0318993_18	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-0318993_19	phrog_37900	72.8	3.7e-21	N/A	unknown function
UniRef90	UHGV-0318993_19	UniRef90_UPI00164D57E4	153.0	2.72e-39	N/A	N/A
eggNOG-mapper	UHGV-0318993_19	1519439.JPJG01000060_gene1894	128.0	5.77e-32	N/A	N/A
Pfam	UHGV-0318993_19	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0318993_19	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0318993_19	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0318993_21	phrog_30516	49.5	0.000000000000062	N/A	unknown function
UniRef90	UHGV-0318993_21	UniRef90_A0A6N7VN03	63.2	0.00000000078	Four helix bundle protein	N/A
structural_annotation	UHGV-0318993_21	PF05635,NF008911	N/A	N/A	N/A	N/A
UniRef90	UHGV-0318993_22	UniRef90_H7BUT5	48.9	0.00000652	N/A	N/A
Pfam	UHGV-0318993_22	PF19789	N/A	N/A	N/A	DUF6273
KOfam	UHGV-0318993_23	K00986	125.7	4.7e-37	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0318993_23	phrog_1423	257.8	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0318993_23	UniRef90_R6GXU6	620.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0318993_23	665950.HMPREF1025_01556	323.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0318993_23	icity0040	105.2	1.5e-30	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0318993_23	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0318993_23	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0318993_23	PF00078,TIGR04416,COG3344	N/A	N/A	N/A	N/A
KOfam	UHGV-0318993_29	K07497	59.7	6.4e-17	K07497; putative transposase	N/A
PHROG	UHGV-0318993_29	phrog_8463	106.1	2.9e-31	transposase	integration and excision
UniRef90	UHGV-0318993_29	UniRef90_A0A1Q6RLB1	427.0	0	Integrase catalytic domain-containing protein	N/A
eggNOG-mapper	UHGV-0318993_29	1123307.KB904367_gene1244	237.0	0	Transposase and inactivated derivatives	N/A
Pfam	UHGV-0318993_29	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
Pfam	UHGV-0318993_29	PF00665	N/A	N/A	Integrase core domain	rve
Pfam	UHGV-0318993_29	PF13683	N/A	N/A	Integrase core domain	rve_3
COG	UHGV-0318993_29	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-0318993_29	PF00665,PF13518,NF033577,COG2801	N/A	N/A	N/A	N/A
Pfam	UHGV-0318993_30	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
PHROG	UHGV-0318993_34	phrog_434	140.9	9.99967e-42	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0318993_34	UniRef90_A0A1W1YQ31	194.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-0318993_34	1121441.AUCX01000014_gene536	172.0	0	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-0318993_34	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0318993_34	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0318993_34	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0318993_34	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0318993_35	phrog_674	157.0	0	N/A	unknown function
UniRef90	UHGV-0318993_35	UniRef90_UPI00189957B9	135.0	2.22e-34	N/A	N/A
eggNOG-mapper	UHGV-0318993_35	658655.HMPREF0988_02587	94.7	1e-19	N/A	N/A
Pfam	UHGV-0318993_35	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0318993_35	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-0318993_36	K07455	193.6	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0318993_36	phrog_148	208.3	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0318993_36	UniRef90_A0A7C6P2G6	335.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0318993_36	1408437.JNJN01000039_gene372	296.0	0	RecT family	N/A
Pfam	UHGV-0318993_36	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0318993_36	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0318993_36	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0318993_36	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0318993_37	K01160	53.8	0.0000000000000051	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0318993_37	phrog_140	124.6	6.2e-37	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0318993_37	UniRef90_A0A7G9GLS4	118.0	1.38e-31	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0318993_37	1123263.AUKY01000072_gene2102	110.0	3.79e-29	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0318993_37	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0318993_37	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0318993_37	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0318993_38	742817.HMPREF9449_01803	83.2	3.19e-16	N/A	N/A
structural_annotation	UHGV-0318993_38	PF14297,TIGR01714,COG3756	N/A	N/A	N/A	N/A
KOfam	UHGV-0318993_39	K03111	51.9	0.0000000000000042	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0318993_39	phrog_26861	90.1	5.9e-27	N/A	unknown function
UniRef90	UHGV-0318993_39	UniRef90_A0A356F3R1	174.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0318993_39	1304880.JAGB01000001_gene702	157.0	2.8026e-45	PFAM single-strand binding protein Primosomal replication protein n	N/A
Pfam	UHGV-0318993_39	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0318993_39	NF004476.0	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0318993_39	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0318993_39	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0318993_40	K03111	146.6	2.49431e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0318993_40	phrog_44	138.1	5.79997e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0318993_40	UniRef90_A0A2V2ET02	193.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0318993_40	1329516.JPST01000014_gene609	123.0	5.29e-34	Single-strand binding protein family	N/A
Pfam	UHGV-0318993_40	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0318993_40	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0318993_40	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0318993_40	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0318993_40	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0318993_41	phrog_997	69.6	5.6e-20	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0318993_41	UniRef90_UPI0011581F2E	57.0	0.0000000637	replication terminator protein	N/A
PHROG	UHGV-0318993_42	phrog_1029	203.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0318993_42	1519439.JPJG01000059_gene1911	152.0	4.38606e-43	N/A	N/A
structural_annotation	UHGV-0318993_42	PF10065,COG5532	N/A	N/A	N/A	N/A
KOfam	UHGV-0318993_45	K00558	180.4	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0318993_45	phrog_116	220.2	0	DNA methyltransferase	other
UniRef90	UHGV-0318993_45	UniRef90_A0A2Z4GUI8	624.0	0	Site-specific DNA methylase	N/A
eggNOG-mapper	UHGV-0318993_45	1519439.JPJG01000060_gene1872	480.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0318993_45	MTase_II_00164	63.7	1.3e-24	Type II methyltransferase	RM
Pfam	UHGV-0318993_45	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0318993_45	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0318993_45	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0318993_46	phrog_799	183.5	0	DNA methyltransferase	other
UniRef90	UHGV-0318993_46	UniRef90_A0A414ZQZ4	238.0	0	NAD(P)-dependent oxidoreductase	N/A
eggNOG-mapper	UHGV-0318993_46	1123263.AUKY01000096_gene1823	204.0	0	DNA restriction-modification system	N/A
COG	UHGV-0318993_46	COG0827	N/A	N/A	Adenine-specific DNA N6-methylase	N/A
structural_annotation	UHGV-0318993_46	PF05869,MF_01872,NF000058,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-0318993_48	phrog_1571	68.5	1.9e-30	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0318993_48	UniRef90_A0A1Q9J7B4	152.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0318993_48	702438.HMPREF9431_00759	137.0	4.27004e-41	HNH endonuclease	N/A
PADLOC	UHGV-0318993_48	ZorE2_00001	40.8	0.000000000055	HNH endonuclease	Zorya
Pfam	UHGV-0318993_48	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0318993_48	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0318993_48	NF008448	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0318993	Yes	47,001	51	100	1