vOTU vOTU-050570

vOTU: vOTU-050570

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-050570
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00099 → vGENUS-17258 → vSUBGEN-31902 → vOTU-050570
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Ruminococcus_B → Ruminococcus_B gnavus
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0321997
Biosample ID	N/A
Genome length (bp)	35,188 bps
CheckV completeness	100.00% (Complete)
CDS count	56
CDS density	92.16%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Ruminococcus_B → Ruminococcus_B gnavus	Total connections	194	Host agreement	88.14
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Ruminococcus_B → Ruminococcus_B gnavus	Total connections	15	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0321997_1	411470.RUMGNA_02218	142.0	2.76056e-42	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0321997_1	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0321997_2	phrog_422	207.0	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0321997_2	411470.RUMGNA_02219	536.0	0	N/A	N/A
structural_annotation	UHGV-0321997_2	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0321997_3	phrog_541	89.6	2.8e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-0321997_3	411470.RUMGNA_02220	194.0	0	N/A	N/A
PHROG	UHGV-0321997_4	phrog_3366	92.8	1.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-0321997_4	411470.RUMGNA_02221	225.0	0	N/A	N/A
Pfam	UHGV-0321997_4	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0321997_4	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0321997_5	phrog_556	138.6	1.49995e-41	minor head protein	head and packaging
UniRef90	UHGV-0321997_5	UniRef90_UPI001C8E2A32	209.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0321997_5	411470.RUMGNA_02222	215.0	0	N/A	N/A
structural_annotation	UHGV-0321997_5	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0321997_6	phrog_3266	155.7	0	tail completion	connector
eggNOG-mapper	UHGV-0321997_6	411470.RUMGNA_02223	271.0	0	N/A	N/A
structural_annotation	UHGV-0321997_6	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0321997_7	phrog_3099	153.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0321997_7	411470.RUMGNA_02224	291.0	0	N/A	N/A
structural_annotation	UHGV-0321997_7	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0321997_8	phrog_4450	123.5	1.1e-36	N/A	unknown function
UniRef90	UHGV-0321997_8	UniRef90_UPI001C0AC01D	77.4	5.5e-16	AP endonuclease	N/A
eggNOG-mapper	UHGV-0321997_8	1235792.C808_05374	145.0	1.96182e-43	N/A	N/A
Pfam	UHGV-0321997_8	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0321997_8	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0321997_9	phrog_706	160.9	0	N/A	unknown function
UniRef90	UHGV-0321997_9	UniRef90_UPI00195660EF	254.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0321997_9	658655.HMPREF0988_02553	236.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0321997_9	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0321997_9	PF06854	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0321997_10	1235792.C808_05376	68.2	0.00000000000000571	N/A	N/A
structural_annotation	UHGV-0321997_10	PF10122,COG4416	N/A	N/A	N/A	N/A
PHROG	UHGV-0321997_11	phrog_6900	254.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0321997_11	UniRef90_UPI001C8EB1BF	117.0	2.54e-23	tape measure protein	N/A
eggNOG-mapper	UHGV-0321997_11	742765.HMPREF9457_02136	342.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0321997_11	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0321997_11	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0321997_12	phrog_202	324.3	0	distal tail protein Dit	tail
UniRef90	UHGV-0321997_12	UniRef90_A7B3U8	903.0	0	Putative phage tail component domain protein	N/A
eggNOG-mapper	UHGV-0321997_12	411470.RUMGNA_02229	903.0	0	N/A	N/A
Pfam	UHGV-0321997_12	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0321997_12	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0321997_12	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0321997_12	PF05709,PF21708,TIGR01633,NF041449,COG4722,COG3506	N/A	N/A	N/A	N/A
PHROG	UHGV-0321997_13	phrog_588	523.7	0	tail fiber protein and host specificity	tail
UniRef90	UHGV-0321997_13	UniRef90_A7B3U9	1438.0	0	Phage minor structural protein, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0321997_13	411470.RUMGNA_02230	1438.0	0	N/A	N/A
structural_annotation	UHGV-0321997_13	PF14594,PF08931,PF20942,TIGR01665,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0321997_14	608534.GCWU000341_02271	55.5	0.0000000109	N/A	N/A
PHROG	UHGV-0321997_15	phrog_10091	99.6	2.8e-29	holin	lysis
UniRef90	UHGV-0321997_15	UniRef90_A0A2N5P008	150.0	0	Phage holin	N/A
eggNOG-mapper	UHGV-0321997_15	428127.EUBDOL_01206	124.0	2.45e-36	COG5546 Small integral membrane protein	N/A
Pfam	UHGV-0321997_15	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0321997_15	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0321997_15	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0321997_15	COG5546	N/A	N/A	N/A	N/A
KOfam	UHGV-0321997_16	K01448	104.0	1.7e-30	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0321997_16	phrog_435	170.5	0	endolysin	lysis
UniRef90	UHGV-0321997_16	UniRef90_A0A2N5NRG3	522.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0321997_16	411470.RUMGNA_02814	512.0	0	Ami_3	N/A
Pfam	UHGV-0321997_16	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0321997_16	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0321997_16	PF01520,MF_00417,TIGR02883,COG0860	N/A	N/A	N/A	N/A
KOfam	UHGV-0321997_17	K06400	374.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0321997_17	phrog_95	385.4	0	integrase	integration and excision
UniRef90	UHGV-0321997_17	UniRef90_UPI0011853F05	861.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0321997_17	411460.RUMTOR_02053	706.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-0321997_17	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0321997_17	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0321997_17	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0321997_17	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0321997_17	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0321997_18	phrog_806	60.5	3.4e-17	N/A	unknown function
UniRef90	UHGV-0321997_18	UniRef90_S2YED8	311.0	0	N/A	N/A
eggNOG-mapper	UHGV-0321997_18	411468.CLOSCI_01239	152.0	1.96182e-44	N/A	N/A
Pfam	UHGV-0321997_18	PF16729	N/A	N/A	N/A	DUF5067
structural_annotation	UHGV-0321997_18	PF16729,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
KOfam	UHGV-0321997_19	K18830	44.3	0.00000000000041	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
UniRef90	UHGV-0321997_19	UniRef90_A0A2N5NVN2	238.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0321997_19	1235790.C805_00012	126.0	5.56e-36	Helix-turn-helix domain	N/A
Pfam	UHGV-0321997_19	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0321997_19	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0321997_19	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0321997_21	phrog_28292	107.0	7.6e-32	N/A	unknown function
UniRef90	UHGV-0321997_21	UniRef90_A0A8B3BZ84	130.0	4.75e-38	3-hydroxyacyl-CoA dehydrogenase	N/A
eggNOG-mapper	UHGV-0321997_21	500632.CLONEX_01438	111.0	2.38e-31	N/A	N/A
KOfam	UHGV-0321997_22	K07741	106.8	4.8e-31	antB; anti-repressor protein	N/A
PHROG	UHGV-0321997_22	phrog_63	214.1	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0321997_22	UniRef90_UPI0015706F54	420.0	0	phage regulatory protein/antirepressor Ant	N/A
eggNOG-mapper	UHGV-0321997_22	262071.A3QSE0_9CAUD	234.0	0	DNA binding	N/A
Pfam	UHGV-0321997_22	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0321997_22	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
NCBIFam	UHGV-0321997_22	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
structural_annotation	UHGV-0321997_22	PF03374,PF09669,TIGR02681,COG3645,COG3646	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0321997_23	1235790.C805_00014	48.9	0.000000271	N/A	N/A
PHROG	UHGV-0321997_27	phrog_5070	110.0	1.4e-32	N/A	unknown function
UniRef90	UHGV-0321997_27	UniRef90_C6L9Y5	133.0	1.36e-36	Bacterial transferase hexapeptide repeat protein	N/A
eggNOG-mapper	UHGV-0321997_27	411470.RUMGNA_02189	204.0	0	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
COG	UHGV-0321997_27	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
PHROG	UHGV-0321997_29	phrog_30234	94.2	7.5e-28	N/A	unknown function
eggNOG-mapper	UHGV-0321997_29	33035.JPJF01000071_gene4461	55.1	0.00000000219	N/A	N/A
PHROG	UHGV-0321997_31	phrog_2872	192.9	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0321997_31	UniRef90_A0A1C5YV83	408.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0321997_31	1304866.K413DRAFT_0827	254.0	0	AAA domain	N/A
Pfam	UHGV-0321997_31	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0321997_31	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0321997_33	phrog_18107	208.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0321997_33	397290.C810_05167	202.0	0	N/A	N/A
structural_annotation	UHGV-0321997_33	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0321997_34	phrog_3490	139.0	2.50006e-41	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0321997_34	UniRef90_A0A851IBF4	215.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0321997_34	397290.C810_05169	194.0	0	ERCC4 domain	N/A
Pfam	UHGV-0321997_34	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0321997_34	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-0321997_35	phrog_2514	101.8	6.3e-30	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0321997_35	UniRef90_UPI000DC4536F	75.5	0.000000000000168	DnaD domain-containing protein	N/A
eggNOG-mapper	UHGV-0321997_35	1111134.HMPREF1253_1417	91.3	3.54e-20	Transcriptional regulator	N/A
COG	UHGV-0321997_35	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0321997_35	PF12793,NF033788,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0321997_36	K17680	133.3	3.08286e-44	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-0321997_36	phrog_19	158.3	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0321997_36	UniRef90_A0A1I7HB00	709.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0321997_36	1298920.KI911353_gene2713	676.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0321997_36	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0321997_36	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0321997_36	PF03796,PF16793,MF_01498,MF_00700,NF004109,NF040562,COG0305,COG1467	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0321997_37	1235798.C817_03496	49.3	0.000000658	N/A	N/A
structural_annotation	UHGV-0321997_38	NF041290	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0321997_39	97139.C824_00033	53.5	0.0000000802	N/A	N/A
PHROG	UHGV-0321997_40	phrog_599	42.7	0.000000000011	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0321997_40	UniRef90_U2DJA0	105.0	2.61e-28	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0321997_40	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0321997_40	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0321997_40	PF14354,TIGR03655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0321997_42	UniRef90_A0A2N5PKF4	338.0	0	N/A	N/A
Pfam	UHGV-0321997_42	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0321997_42	PF04448	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0321997_44	411470.RUMGNA_02203	266.0	0	N/A	N/A
PHROG	UHGV-0321997_46	phrog_36	50.5	0.000000000000041	transcriptional regulator	transcription regulation
UniRef90	UHGV-0321997_46	UniRef90_A0A7X4ZQ48	134.0	5.28e-38	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-0321997_46	1235792.C808_05360	126.0	1.93e-35	N/A	N/A
structural_annotation	UHGV-0321997_46	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0321997_47	phrog_309	205.1	0	terminase small subunit	head and packaging
UniRef90	UHGV-0321997_47	UniRef90_A0A2N5PKF8	305.0	0	Transposase	N/A
eggNOG-mapper	UHGV-0321997_47	411470.RUMGNA_02210	206.0	0	transposase activity	N/A
Pfam	UHGV-0321997_47	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-0321997_47	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0321997_47	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0321997_48	K06909	81.4	1.4e-23	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0321997_48	phrog_2	87.3	3e-25	terminase large subunit	head and packaging
UniRef90	UHGV-0321997_48	UniRef90_A7B3T0	875.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0321997_48	411470.RUMGNA_02211	875.0	0	N/A	N/A
Pfam	UHGV-0321997_48	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0321997_48	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0321997_48	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0321997_49	phrog_533	336.6	0	portal protein	head and packaging
UniRef90	UHGV-0321997_49	UniRef90_A7B3T1	874.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0321997_49	411470.RUMGNA_02212	874.0	0	N/A	N/A
structural_annotation	UHGV-0321997_49	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0321997_50	phrog_581	338.7	0	minor head protein	head and packaging
UniRef90	UHGV-0321997_50	UniRef90_UPI001EE14397	624.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0321997_50	411470.RUMGNA_02213	764.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0321997_50	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0321997_50	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0321997_50	PF06152	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0321997_51	411470.RUMGNA_02214	176.0	0	N/A	N/A
structural_annotation	UHGV-0321997_51	PF08948,MF_01537,NF007541,COG3123	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0321997_52	411470.RUMGNA_02215	229.0	0	N/A	N/A
NCBIFam	UHGV-0321997_54	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0321997_54	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0321997_56	phrog_194	59.7	6.9e-17	head scaffolding protein	head and packaging
UniRef90	UHGV-0321997_56	UniRef90_A5KPA4	171.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0321997_56	411470.RUMGNA_02218	189.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0321997_56	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0321997	Yes	35,188	42	100	1
UHGV-0391323	No	13,997	43	37	1
UHGV-1951997	No	11,229	40	29	1