vOTU vOTU-051340

vOTU: vOTU-051340

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-051340
Number of genomes	11
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-01684 → vGENUS-06645 → vSUBGEN-41674 → vOTU-051340
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272
Host range breadth	Family
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0376846
Biosample ID	SAMN04571694
Genome length (bp)	31,830 bps
CheckV completeness	100.00% (Complete)
CDS count	50
CDS density	92.51%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage		Total connections		Host agreement
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272	Total connections	11	Host agreement	90.91

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0376846_1	phrog_58	89.1	6.2e-26	tail length tape measure protein	tail
UniRef90	UHGV-0376846_1	UniRef90_A0A2X3INJ3	72.8	0.000000000000226	N/A	N/A
eggNOG-mapper	UHGV-0376846_1	1540257.JQMW01000013_gene731	134.0	1.72e-34	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0376846_1	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0376846_2	phrog_33	102.4	7.3e-30	distal tail protein Dit	tail
UniRef90	UHGV-0376846_2	UniRef90_UPI00164BA811	216.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0376846_2	1160721.RBI_I01575	190.0	0	Phage tail protein	N/A
NCBIFam	UHGV-0376846_2	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0376846_2	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0376846_2	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0376846_3	phrog_1067	429.2	0	minor head protein	head and packaging
UniRef90	UHGV-0376846_3	UniRef90_A0A224ATB0	413.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0376846_3	1160721.RBI_I01574	458.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0376846_3	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0376846_3	PF12421	N/A	N/A	Fibronectin type III protein	DUF3672
Pfam	UHGV-0376846_3	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-0376846_3	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0376846_3	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0376846_3	PF14594,PF13884,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0376846_5	phrog_17147	147.7	8.12753e-44	N/A	unknown function
UniRef90	UHGV-0376846_5	UniRef90_A0A1F8V1G3	276.0	0	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0376846_5	1284775.HMPREF1640_07020	62.0	0.000000397	N/A	N/A
Pfam	UHGV-0376846_5	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-0376846_5	PF12571	N/A	N/A	N/A	N/A
PHROG	UHGV-0376846_7	phrog_4912	65.8	8.8e-19	tail fiber assembly	tail
UniRef90	UHGV-0376846_7	UniRef90_A0A843GPS8	113.0	4.99e-29	Phage tail assembly chaperone	N/A
Pfam	UHGV-0376846_7	PF16778	N/A	N/A	Phage tail assembly chaperone protein	Phage_tail_APC
structural_annotation	UHGV-0376846_7	PF16778	N/A	N/A	N/A	N/A
PHROG	UHGV-0376846_8	phrog_4105	84.4	1.1e-24	N/A	unknown function
eggNOG-mapper	UHGV-0376846_8	1235790.C805_00613	84.7	6.92e-20	N/A	N/A
PHROG	UHGV-0376846_9	phrog_1129	61.8	7.6e-18	holin	lysis
UniRef90	UHGV-0376846_9	UniRef90_A0A7G9G6X9	65.5	0.0000000000186	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0376846_9	742740.HMPREF9474_03522	62.4	0.0000000000426	N/A	N/A
Pfam	UHGV-0376846_9	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UniRef90	UHGV-0376846_10	UniRef90_A0A374DTF3	75.5	0.000000000000108	N/A	N/A
eggNOG-mapper	UHGV-0376846_10	537007.BLAHAN_07167	55.5	0.000000858	N/A	N/A
KOfam	UHGV-0376846_11	K22300	51.0	0.000000000000035	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0376846_11	UniRef90_A0A6N3UZK5	125.0	3.45e-36	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0376846_11	1235797.C816_02851	112.0	8.61e-32	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0376846_11	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0376846_11	PF13560,NF041951,COG1813	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0376846_13	cluster_160566	55.5	0.0000000000000253	NA	N/A
UniRef90	UHGV-0376846_14	UniRef90_R6TP76	96.3	5.58e-25	RHH_1 domain-containing protein	N/A
Pfam	UHGV-0376846_14	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0376846_14	PF01402,NF040976,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-0376846_15	K07482	301.8	0	K07482; transposase, IS30 family	N/A
PHROG	UHGV-0376846_15	phrog_4646	379.6	0	transposase	integration and excision
UniRef90	UHGV-0376846_15	UniRef90_A0A174MGT5	414.0	0	Transposase and inactivated derivatives, IS30 family	N/A
eggNOG-mapper	UHGV-0376846_15	411459.RUMOBE_01705	414.0	0	COG COG2826 Transposase and inactivated derivatives, IS30 family	N/A
Pfam	UHGV-0376846_15	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
NCBIFam	UHGV-0376846_15	NF033563.0	N/A	N/A	IS30 family transposase	N/A
COG	UHGV-0376846_15	COG2826	N/A	N/A	Transposase and inactivated derivatives, IS30 family	N/A
structural_annotation	UHGV-0376846_15	PF03400,PF13384,NF033563,COG2826	N/A	N/A	N/A	N/A
KOfam	UHGV-0376846_17	K07482	44.8	0.0000000000018	K07482; transposase, IS30 family	N/A
PHROG	UHGV-0376846_17	phrog_11420	111.2	3.6e-33	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0376846_17	UniRef90_A0A1Q6L0N6	86.3	4.2e-20	HTH_38 domain-containing protein	N/A
eggNOG-mapper	UHGV-0376846_17	1203606.HMPREF1526_01866	86.7	6.68e-21	Helix-turn-helix domain	N/A
Pfam	UHGV-0376846_17	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
structural_annotation	UHGV-0376846_17	PF04218	N/A	N/A	N/A	N/A
PHROG	UHGV-0376846_18	phrog_22740	72.2	7.2e-21	N/A	unknown function
UniRef90	UHGV-0376846_18	UniRef90_A0A1C6HYN2	92.4	6.21e-23	Phage N-6-adenine-methyltransferase	N/A
eggNOG-mapper	UHGV-0376846_18	445972.ANACOL_03344	96.3	1.5e-24	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0376846_18	oMTase_00015	57.6	5e-16	orphan methyltransferase	RM
Pfam	UHGV-0376846_18	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
PHROG	UHGV-0376846_21	phrog_359	130.5	8.2e-39	DNA methyltransferase	other
UniRef90	UHGV-0376846_21	UniRef90_A0A6N9K679	241.0	0	DNA methyltransferase	N/A
eggNOG-mapper	UHGV-0376846_21	887325.HMPREF0381_0367	237.0	0	MT-A70	N/A
PADLOC	UHGV-0376846_21	MTase_II_00048	105.6	7.7e-31	Type II methyltransferase	RM
Pfam	UHGV-0376846_21	PF05063	N/A	N/A	MT-A70	MT-A70
COG	UHGV-0376846_21	COG4725	N/A	N/A	N6-adenosine-specific RNA methylase IME4	N/A
structural_annotation	UHGV-0376846_21	PF05063,MF_01872,NF010253,COG4725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0376846_23	PF13613	N/A	N/A	N/A	N/A
UniRef90	UHGV-0376846_26	UniRef90_T0I3T0	73.9	0.0000000000000712	N/A	N/A
Pfam	UHGV-0376846_26	PF19481	N/A	N/A	N/A	DUF6017
PHROG	UHGV-0376846_27	phrog_3584	193.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0376846_27	UniRef90_R6RCC6	207.0	0	Gp31	N/A
eggNOG-mapper	UHGV-0376846_27	1415775.U729_1544	127.0	3.45e-32	N/A	N/A
structural_annotation	UHGV-0376846_27	PF21578,NF033538	N/A	N/A	N/A	N/A
KOfam	UHGV-0376846_28	K00558	112.0	4.6e-33	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0376846_28	phrog_116	121.1	6.7e-36	DNA methyltransferase	other
UniRef90	UHGV-0376846_28	UniRef90_A0A4S2H9S0	219.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0376846_28	1235799.C818_01392	208.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0376846_28	oMTase_00004	195.5	0	orphan methyltransferase	RM
Pfam	UHGV-0376846_28	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0376846_28	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0376846_28	PF01189,MF_00786,TIGR00406,COG2263	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0376846_29	657322.FPR_23130	66.2	0.00000000000185	N/A	N/A
PHROG	UHGV-0376846_30	phrog_38038	74.5	6.4e-37	N/A	unknown function
UniRef90	UHGV-0376846_30	UniRef90_UPI001C12AC6A	122.0	2.03e-27	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0376846_30	498761.HM1_2947	117.0	2.97e-26	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0376846_30	oMTase_00004	56.1	7.00649e-45	orphan methyltransferase	RM
COG	UHGV-0376846_30	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0376846_31	phrog_824	142.8	9.40271e-43	N/A	unknown function
UniRef90	UHGV-0376846_31	UniRef90_A0A3R6I6C8	167.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0376846_31	397288.C806_00096	158.0	0	VRR_NUC	N/A
Pfam	UHGV-0376846_31	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
PHROG	UHGV-0376846_32	phrog_986	100.7	1.1e-29	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0376846_32	UniRef90_R5Y974	105.0	2.59e-27	PF12961 structural domain protein	N/A
eggNOG-mapper	UHGV-0376846_32	509190.Cseg_3601	71.6	0.0000000000000201	N/A	N/A
Pfam	UHGV-0376846_32	PF12961	N/A	N/A	N/A	DUF3850
structural_annotation	UHGV-0376846_32	PF12961,MF_00684,NF003443,COG4043	N/A	N/A	N/A	N/A
KOfam	UHGV-0376846_33	K03111	118.5	9.4e-35	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0376846_33	phrog_44	130.3	1.5e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0376846_33	UniRef90_A0A645G8M8	160.0	0	Single-stranded DNA-binding protein A	N/A
eggNOG-mapper	UHGV-0376846_33	1007096.BAGW01000023_gene151	117.0	3.54e-32	Single-strand binding protein family	N/A
Pfam	UHGV-0376846_33	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0376846_33	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0376846_33	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0376846_33	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0376846_33	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0376846_34	phrog_24518	117.0	1.4e-34	N/A	unknown function
eggNOG-mapper	UHGV-0376846_34	1519439.JPJG01000077_gene922	133.0	3.08e-36	N/A	N/A
PHROG	UHGV-0376846_36	phrog_31049	64.3	1.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-0376846_36	1196322.A370_05725	79.3	1.48e-16	N/A	N/A
structural_annotation	UHGV-0376846_36	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0376846_37	phrog_119	62.4	7.8e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0376846_37	UniRef90_A0A420VIS5	129.0	1.14e-36	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0376846_37	1094508.Tsac_2429	122.0	8.9e-35	HNH nucleases	N/A
Pfam	UHGV-0376846_37	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0376846_37	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0376846_38	phrog_1066	81.4	9.9e-24	N/A	unknown function
eggNOG-mapper	UHGV-0376846_38	397290.C810_00417	104.0	1.64e-27	N/A	N/A
structural_annotation	UHGV-0376846_38	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0376846_39	phrog_9	367.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0376846_39	UniRef90_A0A355JE04	916.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0376846_39	411468.CLOSCI_00551	800.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-0376846_39	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0376846_39	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0376846_39	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0376846_39	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0376846_40	phrog_12	185.6	0	portal protein	head and packaging
UniRef90	UHGV-0376846_40	UniRef90_A0A355JF89	533.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0376846_40	411468.CLOSCI_00550	486.0	0	Phage portal protein	N/A
Pfam	UHGV-0376846_40	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0376846_40	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0376846_40	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0376846_40	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0376846_41	K01358	129.4	3.7e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0376846_41	phrog_94	228.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0376846_41	UniRef90_A0A355JF79	330.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0376846_41	1382358.JHVN01000024_gene1706	274.0	0	Serine dehydrogenase proteinase	N/A
Pfam	UHGV-0376846_41	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0376846_41	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0376846_41	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0376846_42	phrog_10	120.7	1.6e-35	major head protein	head and packaging
UniRef90	UHGV-0376846_42	UniRef90_A0A355JDD3	459.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0376846_42	411468.CLOSCI_00548	365.0	0	Phage capsid family	N/A
Pfam	UHGV-0376846_42	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0376846_42	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
PHROG	UHGV-0376846_43	phrog_5223	64.6	1.1e-18	neck protein	connector
UniRef90	UHGV-0376846_43	UniRef90_A0A174XIL0	94.0	4.06e-23	N/A	N/A
eggNOG-mapper	UHGV-0376846_43	411902.CLOBOL_03878	100.0	2.16e-26	N/A	N/A
PHROG	UHGV-0376846_44	phrog_1951	58.6	9.2e-17	head-tail adaptor	connector
UniRef90	UHGV-0376846_44	UniRef90_UPI000BEBAFD0	56.2	0.0000000476	phage head closure protein	N/A
eggNOG-mapper	UHGV-0376846_44	198094.BA_0471	53.1	0.000000126	head-tail adaptor	N/A
COG	UHGV-0376846_44	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0376846_44	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0376846_45	UniRef90_A0A7G8TDY4	108.0	4.03e-28	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0376846_45	86416.Clopa_0344	92.0	3.41e-22	N/A	N/A
Pfam	UHGV-0376846_45	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0376846_45	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0376846_46	742741.HMPREF9475_02370	64.7	0.00000000000553	N/A	N/A
structural_annotation	UHGV-0376846_46	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0376846_47	phrog_2175	101.8	6.4e-30	protein with Ig domain	other
UniRef90	UHGV-0376846_47	UniRef90_A0A401UUY1	236.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0376846_47	588581.Cpap_1267	261.0	0	N/A	N/A
structural_annotation	UHGV-0376846_47	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0376846_48	1280689.AUJC01000007_gene3310	50.4	0.00000146	N/A	N/A
structural_annotation	UHGV-0376846_48	PF17388	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0376846_49	411902.CLOBOL_03872	91.7	3.4e-23	N/A	N/A
PHROG	UHGV-0376846_50	phrog_5755	129.0	3.4e-38	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0376846_50	431943.CKL_2631	262.0	0	tape measure	N/A
COG	UHGV-0376846_50	COG5185	N/A	N/A	Chromosome segregation protein NDC80, interacts with SMC proteins	N/A
structural_annotation	UHGV-0376846_50	COG5280	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0376846	Yes	31,830	49	100	1
UHGV-1425392	No	32,864	49	100	1
UHGV-1428159	No	32,850	49	100	1
UHGV-0178434	No	31,866	49	100	1
UHGV-0261714	No	31,792	49	100	1
UHGV-0062442	No	31,557	49	99	1
UHGV-0373135	No	21,709	49	68	1
UHGV-0033318	No	18,037	49	57	1
UHGV-0067877	No	16,995	49	53	1
UHGV-0031271	No	16,155	49	51	1
UHGV-1616668	No	10,422	50	33	1