vOTU vOTU-051648

vOTU: vOTU-051648

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-051648
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-03363 → vGENUS-04783 → vSUBGEN-07451 → vOTU-051648
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0384460
Biosample ID	N/A
Genome length (bp)	37,629 bps
CheckV completeness	100.00% (Complete)
CDS count	59
CDS density	90.66%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans	Total connections	264	Host agreement	98.11
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans	Total connections	37	Host agreement	91.89

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0384460_1	665956.HMPREF1032_03918	386.0	0	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
PHROG	UHGV-0384460_2	phrog_3287	145.6	3.60134e-43	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0384460_2	665956.HMPREF1032_03917	1247.0	0	N/A	N/A
structural_annotation	UHGV-0384460_2	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0384460_3	PF20387	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0384460_4	PF07100,COG4288	N/A	N/A	N/A	N/A
PHROG	UHGV-0384460_5	phrog_267	103.7	1.9e-30	major head protein	head and packaging
UniRef90	UHGV-0384460_5	UniRef90_A0A3A9JXK2	166.0	0	P22 coat protein-protein 5 domain protein	N/A
eggNOG-mapper	UHGV-0384460_5	665956.HMPREF1032_03906	522.0	0	P22 coat protein-protein 5 domain protein	N/A
structural_annotation	UHGV-0384460_5	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0384460_8	phrog_156	83.6	2e-24	portal protein	head and packaging
eggNOG-mapper	UHGV-0384460_8	665956.HMPREF1032_03886	958.0	0	N/A	N/A
structural_annotation	UHGV-0384460_8	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0384460_10	K06909	131.3	7.9e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0384460_10	phrog_979	166.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0384460_10	UniRef90_UPI0019677368	837.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0384460_10	665956.HMPREF1032_03884	788.0	0	Terminase-like family	N/A
Pfam	UHGV-0384460_10	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0384460_10	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0384460_10	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0384460_11	UniRef90_A0A0W7TNA7	139.0	5.98004e-41	N/A	N/A
PHROG	UHGV-0384460_12	phrog_13890	50.8	0.000000000000022	N/A	unknown function
UniRef90	UHGV-0384460_12	UniRef90_UPI001CBBD546	60.1	0.000000000149	antitoxin	N/A
eggNOG-mapper	UHGV-0384460_12	742738.HMPREF9460_00716	53.5	0.00000000915	N/A	N/A
PHROG	UHGV-0384460_13	phrog_25027	83.5	1.5e-24	N/A	unknown function
UniRef90	UHGV-0384460_13	UniRef90_A0A1Y3RPR4	103.0	3.57e-26	ArdcN domain-containing protein	N/A
eggNOG-mapper	UHGV-0384460_13	1399942.U3PBI8_9CAUD	84.7	1.1e-19	N/A	N/A
Pfam	UHGV-0384460_13	PF08401	N/A	N/A	N-terminal domain of anti-restriction factor ArdC	ArdcN
structural_annotation	UHGV-0384460_13	PF08401	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0384460_15	1232443.BAIA02000135_gene1402	50.4	0.000000103	N/A	N/A
PHROG	UHGV-0384460_16	phrog_19458	265.2	0	primase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0384460_16	397291.C804_05264	194.0	0	N/A	N/A
COG	UHGV-0384460_16	COG0827	N/A	N/A	Adenine-specific DNA N6-methylase	N/A
PHROG	UHGV-0384460_19	phrog_2245	90.3	2.1e-26	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0384460_19	UniRef90_A0A4U9RLZ8	73.9	0.000000000000003	N/A	N/A
eggNOG-mapper	UHGV-0384460_19	1519439.JPJG01000059_gene1914	68.2	0.000000000000198	N/A	N/A
eggNOG-mapper	UHGV-0384460_21	665956.HMPREF1032_03084	68.9	0.0000000000000137	N/A	N/A
structural_annotation	UHGV-0384460_22	PF06257,NF011232	N/A	N/A	N/A	N/A
PHROG	UHGV-0384460_23	phrog_38832	76.1	2.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0384460_23	665956.HMPREF1032_03087	158.0	0	N/A	N/A
PHROG	UHGV-0384460_24	phrog_757	250.6	0	DNA methyltransferase	other
UniRef90	UHGV-0384460_24	UniRef90_A0A372V4B7	404.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0384460_24	485918.Cpin_3834	271.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0384460_24	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0384460_24	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0384460_28	phrog_8841	473.4	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0384460_28	UniRef90_A0A372V3W4	1222.0	0	N/A	N/A
eggNOG-mapper	UHGV-0384460_28	742738.HMPREF9460_02495	594.0	0	N/A	N/A
Pfam	UHGV-0384460_28	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0384460_28	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0384460_28	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0384460_28	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0384460_29	K02316	77.3	2.1e-22	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0384460_29	phrog_11992	110.5	1.7e-32	N/A	unknown function
UniRef90	UHGV-0384460_29	UniRef90_A0A372V3Z0	349.0	0	ZnF_CHCC domain-containing protein	N/A
eggNOG-mapper	UHGV-0384460_29	742738.HMPREF9460_02494	92.8	2.25e-21	CHC2 zinc finger	N/A
PADLOC	UHGV-0384460_29	drt-cluster192	61.9	1.5e-17	DRT	DRT
Pfam	UHGV-0384460_29	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0384460_29	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0384460_29	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-0384460_30	phrog_3490	119.7	2e-35	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0384460_30	UniRef90_A0A372V4F7	351.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0384460_30	476272.RUMHYD_01740	186.0	0	ERCC4 domain	N/A
Pfam	UHGV-0384460_30	PF02732	N/A	N/A	ERCC4 domain	ERCC4
COG	UHGV-0384460_30	COG1948	N/A	N/A	ERCC4-type crossover junction endonuclease	N/A
structural_annotation	UHGV-0384460_30	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-0384460_31	phrog_18107	86.9	2.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-0384460_31	476272.RUMHYD_02831	143.0	2.48e-40	N/A	N/A
structural_annotation	UHGV-0384460_31	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0384460_32	phrog_2872	201.2	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0384460_32	UniRef90_A0A372V4A8	403.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0384460_32	1415774.U728_1119	262.0	0	AAA domain	N/A
structural_annotation	UHGV-0384460_32	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
UniRef90	UHGV-0384460_33	UniRef90_R6RDX0	75.9	9.07e-17	Arginyl-tRNA synthetase	N/A
PHROG	UHGV-0384460_36	phrog_1123	47.8	0.00000000000018	N/A	unknown function
structural_annotation	UHGV-0384460_36	PF02002,MF_01804,NF040939,COG3355	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0384460_37	cluster_35670	152.0	0	NA	N/A
structural_annotation	UHGV-0384460_37	NF042413	N/A	N/A	N/A	N/A
PHROG	UHGV-0384460_45	phrog_1468	42.6	0.0000000000021	transcriptional repressor	transcription regulation
UniRef90	UHGV-0384460_45	UniRef90_UPI00164A3CC9	87.4	3.34e-21	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0384460_45	742738.HMPREF9460_02486	73.9	1.41e-16	N/A	N/A
structural_annotation	UHGV-0384460_45	TIGR03070	N/A	N/A	N/A	N/A
PHROG	UHGV-0384460_46	phrog_8	44.8	0.0000000000023	transcriptional regulator	transcription regulation
UniRef90	UHGV-0384460_46	UniRef90_UPI001966F1BB	130.0	4.17e-36	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0384460_46	411460.RUMTOR_02056	89.4	1.05e-20	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-0384460_46	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0384460_46	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0384460_46	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0384460_47	phrog_87	65.9	4.5e-19	metallo-protease	other
UniRef90	UHGV-0384460_47	UniRef90_UPI001966F635	167.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0384460_47	1297617.JPJD01000059_gene2645	75.5	0.00000000000000282	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0384460_47	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0384460_47	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0384460_47	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0384460_50	phrog_3243	91.8	5.9e-27	N/A	unknown function
eggNOG-mapper	UHGV-0384460_50	428127.EUBDOL_01231	75.5	0.000000000000851	N/A	N/A
structural_annotation	UHGV-0384460_50	PF15072,MF_00075,TIGR00008,COG0361	N/A	N/A	N/A	N/A
KOfam	UHGV-0384460_51	K14059	166.7	0	int; integrase	N/A
PHROG	UHGV-0384460_51	phrog_1	166.7	0	integrase	integration and excision
UniRef90	UHGV-0384460_51	UniRef90_UPI0018989279	466.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0384460_51	936580.HMPREF1516_0752	72.4	0.0000000000422	DNA integration	N/A
Pfam	UHGV-0384460_51	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0384460_51	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0384460_51	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0384460_52	871968.DESME_08840	325.0	0	N/A	N/A
PHROG	UHGV-0384460_54	phrog_1129	69.6	3.1e-20	holin	lysis
UniRef90	UHGV-0384460_54	UniRef90_A0A0D8J2M2	176.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0384460_54	665956.HMPREF1032_03272	158.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0384460_54	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0384460_54	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0384460_55	phrog_4105	93.3	1.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-0384460_55	657322.FPR_27220	114.0	1.16e-31	N/A	N/A
PHROG	UHGV-0384460_56	phrog_419	79.1	7.8e-25	N/A	unknown function
UniRef90	UHGV-0384460_56	UniRef90_A0A1L5L3J8	124.0	6.79e-36	PGDYG protein (Fragment)	N/A
eggNOG-mapper	UHGV-0384460_56	864563.HMPREF9166_1012	92.8	2e-24	N/A	N/A
structural_annotation	UHGV-0384460_56	PF14083	N/A	N/A	N/A	N/A
KOfam	UHGV-0384460_57	K19304	87.7	1.5e-25	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0384460_57	phrog_7767	85.7	4.5e-25	metallo-endopeptidase	other
UniRef90	UHGV-0384460_57	UniRef90_A0A0W7TLV7	499.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0384460_57	665956.HMPREF1032_00102	467.0	0	heme binding	N/A
Pfam	UHGV-0384460_57	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0384460_57	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0384460_57	PF01551,NF040883,COG0739	N/A	N/A	N/A	N/A
PHROG	UHGV-0384460_58	phrog_134	58.5	8.7e-17	N/A	unknown function
UniRef90	UHGV-0384460_58	UniRef90_A0A372V0Q1	82.8	3.27e-20	XkdX family protein	N/A
eggNOG-mapper	UHGV-0384460_58	697281.Mahau_0596	49.3	0.000000108	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0384460_58	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-0384460_58	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
structural_annotation	UHGV-0384460_58	PF09693,TIGR01669	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0384460	Yes	37,629	51	100	1