vOTU vOTU-052063

vOTU: vOTU-052063

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-052063
Number of genomes	64
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00060 → vSUBFAM-02806 → vGENUS-13331 → vSUBGEN-21315 → vOTU-052063
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_C
Host range breadth	Genus
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0387945
Biosample ID	N/A
Genome length (bp)	30,143 bps
CheckV completeness	100.00% (Complete)
CDS count	44
CDS density	93.96%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_C	Total connections	78	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_C	Total connections	288	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0387945_1	phrog_157	85.5	5.7e-25	transposase	integration and excision
UniRef90	UHGV-0387945_1	UniRef90_D4LC75	280.0	0	Transposase and inactivated derivatives	N/A
eggNOG-mapper	UHGV-0387945_1	411473.RUMCAL_00535	244.0	0	N/A	N/A
COG	UHGV-0387945_1	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
KOfam	UHGV-0387945_2	K07483	50.4	0.000000000000061	K07483; transposase	N/A
PHROG	UHGV-0387945_2	phrog_151	41.1	0.000000000017	transposase	integration and excision
UniRef90	UHGV-0387945_2	UniRef90_A0A374VSW1	201.0	0	Transposase	N/A
eggNOG-mapper	UHGV-0387945_2	411473.RUMCAL_01460	169.0	0	Transposase	N/A
Pfam	UHGV-0387945_2	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-0387945_2	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
UniRef90	UHGV-0387945_3	UniRef90_UPI000422AEEC	429.0	0	N/A	N/A
eggNOG-mapper	UHGV-0387945_3	411473.RUMCAL_01471	597.0	0	N/A	N/A
COG	UHGV-0387945_3	COG1479	N/A	N/A	N/A	N/A
KOfam	UHGV-0387945_4	K07273	179.4	0	acm; lysozyme	N/A
PHROG	UHGV-0387945_4	phrog_291	131.8	4.5e-39	endolysin	lysis
UniRef90	UHGV-0387945_4	UniRef90_U2K8D9	735.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0387945_4	411473.RUMCAL_01945	735.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0387945_4	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
Pfam	UHGV-0387945_4	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0387945_4	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0387945_4	PF01183,PF08291,NF007557,COG3757,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0387945_5	phrog_1129	68.2	8.4e-20	holin	lysis
UniRef90	UHGV-0387945_5	UniRef90_A0A416MDZ9	122.0	1.84e-34	Enolase	N/A
eggNOG-mapper	UHGV-0387945_5	411473.RUMCAL_01944	167.0	0	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0387945_5	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0387945_5	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0387945_7	phrog_35590	384.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0387945_7	411473.RUMCAL_00613	108.0	1.13e-24	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0387945_7	COG2931	N/A	N/A	Ca2+-binding protein, RTX toxin-related	N/A
structural_annotation	UHGV-0387945_7	PF07675,NF038128	N/A	N/A	N/A	N/A
KOfam	UHGV-0387945_8	K13884	81.0	1.1e-23	MARCO; macrophage receptor with collagenous structure	N/A
PHROG	UHGV-0387945_8	phrog_25888	526.2	0	N/A	unknown function
UniRef90	UHGV-0387945_8	UniRef90_U2KR58	630.0	0	Collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-0387945_8	411473.RUMCAL_01941	630.0	0	cell adhesion	N/A
Pfam	UHGV-0387945_8	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0387945_8	COG3468	N/A	N/A	Autotransporter adhesin AidA	N/A
structural_annotation	UHGV-0387945_8	PF10651	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0387945_9	PF14594,TIGR03361,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0387945_11	phrog_1272	353.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0387945_11	UniRef90_R7FII5	941.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0387945_11	411473.RUMCAL_01938	939.0	0	tail tape measure protein, TP901	N/A
Pfam	UHGV-0387945_11	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0387945_11	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0387945_11	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0387945_12	phrog_706	167.0	0	N/A	unknown function
UniRef90	UHGV-0387945_12	UniRef90_B0NG03	145.0	6.07995e-41	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0387945_12	411473.RUMCAL_01937	388.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0387945_12	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0387945_12	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0387945_13	phrog_4450	108.0	6.4e-32	N/A	unknown function
UniRef90	UHGV-0387945_13	UniRef90_A0A355D9Y6	53.5	0.00000102	AP endonuclease	N/A
eggNOG-mapper	UHGV-0387945_13	641112.ACOK01000073_gene2902	89.0	4.42e-21	N/A	N/A
Pfam	UHGV-0387945_13	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0387945_13	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0387945_14	phrog_3099	197.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0387945_14	411473.RUMCAL_01935	513.0	0	N/A	N/A
structural_annotation	UHGV-0387945_14	PF08813,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0387945_15	phrog_3266	165.4	0	tail completion	connector
UniRef90	UHGV-0387945_15	UniRef90_A0A355UZ60	167.0	0	Chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0387945_15	411473.RUMCAL_01934	309.0	0	N/A	N/A
structural_annotation	UHGV-0387945_15	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0387945_16	phrog_556	85.5	5.1e-25	minor head protein	head and packaging
UniRef90	UHGV-0387945_16	UniRef90_T3DSR7	79.3	7.87e-17	Minor capsid family protein	N/A
eggNOG-mapper	UHGV-0387945_16	1151292.QEW_4532	79.3	1.32e-17	Minor capsid protein	N/A
Pfam	UHGV-0387945_16	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0387945_16	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0387945_17	phrog_3366	61.3	1.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-0387945_17	411473.RUMCAL_01932	231.0	0	N/A	N/A
structural_annotation	UHGV-0387945_17	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0387945_18	phrog_541	100.2	1.5e-29	head-tail adaptor	connector
eggNOG-mapper	UHGV-0387945_18	641112.ACOK01000073_gene2896	102.0	3.3e-26	N/A	N/A
PHROG	UHGV-0387945_19	phrog_267	97.5	1.4e-28	major head protein	head and packaging
UniRef90	UHGV-0387945_19	UniRef90_A0A4P8IA69	360.0	0	Phage capsid and scaffold	N/A
eggNOG-mapper	UHGV-0387945_19	411473.RUMCAL_01930	556.0	0	N/A	N/A
structural_annotation	UHGV-0387945_19	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0387945_20	phrog_194	58.0	2.1e-16	head scaffolding protein	head and packaging
UniRef90	UHGV-0387945_20	UniRef90_R7FEY9	331.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0387945_20	411473.RUMCAL_01929	331.0	0	Phage minor structural protein GP20	N/A
structural_annotation	UHGV-0387945_20	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0387945_22	phrog_1048	99.3	6e-29	N/A	unknown function
UniRef90	UHGV-0387945_22	UniRef90_A0A3D5KWH4	152.0	0	N/A	N/A
eggNOG-mapper	UHGV-0387945_22	411473.RUMCAL_01927	174.0	0	N/A	N/A
Pfam	UHGV-0387945_22	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0387945_22	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0387945_22	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0387945_24	phrog_581	323.8	0	minor head protein	head and packaging
UniRef90	UHGV-0387945_24	UniRef90_U2K8C2	1157.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0387945_24	411473.RUMCAL_01925	1157.0	0	N/A	N/A
Pfam	UHGV-0387945_24	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0387945_24	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0387945_24	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0387945_25	phrog_533	328.5	0	portal protein	head and packaging
UniRef90	UHGV-0387945_25	UniRef90_U2KRP5	865.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0387945_25	411473.RUMCAL_01924	865.0	0	N/A	N/A
structural_annotation	UHGV-0387945_25	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0387945_26	K06909	144.4	9.59889e-43	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0387945_26	phrog_2	165.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0387945_26	UniRef90_U2LZ34	899.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0387945_26	411473.RUMCAL_01923	899.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0387945_26	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0387945_26	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0387945_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0387945_26	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0387945_27	UniRef90_W0U9H3	55.8	0.000000235	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0387945_27	411473.RUMCAL_01921	214.0	0	N/A	N/A
KOfam	UHGV-0387945_28	K02601	54.3	0.0000000000000021	nusG; transcription termination/antitermination protein NusG	N/A
PHROG	UHGV-0387945_28	phrog_6386	132.5	2.3e-39	transcription antiterminator	transcription regulation
UniRef90	UHGV-0387945_28	UniRef90_U2K8B7	336.0	0	Transcription termination/antitermination factor NusG	N/A
eggNOG-mapper	UHGV-0387945_28	411473.RUMCAL_01920	336.0	0	Transcription termination factor nusG	N/A
Pfam	UHGV-0387945_28	PF02357	N/A	N/A	Transcription termination factor nusG	NusG
COG	UHGV-0387945_28	COG0250	N/A	N/A	Transcription termination/antitermination protein NusG	N/A
structural_annotation	UHGV-0387945_28	PF02357,MF_00951,NF033641,COG0250	N/A	N/A	N/A	N/A
PHROG	UHGV-0387945_29	phrog_426	105.0	9.1e-31	terminase small subunit	head and packaging
UniRef90	UHGV-0387945_29	UniRef90_UPI001D05DC57	176.0	0	N/A	N/A
eggNOG-mapper	UHGV-0387945_29	411473.RUMCAL_01919	350.0	0	N/A	N/A
Pfam	UHGV-0387945_29	PF11985	N/A	N/A	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
structural_annotation	UHGV-0387945_29	PF11985	N/A	N/A	N/A	N/A
PHROG	UHGV-0387945_30	phrog_25462	185.7	0	N/A	unknown function
UniRef90	UHGV-0387945_30	UniRef90_A0A3C0QMV8	139.0	7.99006e-41	Type VI secretion protein	N/A
eggNOG-mapper	UHGV-0387945_30	411473.RUMCAL_01918	205.0	0	N/A	N/A
structural_annotation	UHGV-0387945_30	PF01638,MF_01819,NF002926,COG1733	N/A	N/A	N/A	N/A
PHROG	UHGV-0387945_31	phrog_462	63.2	2.4e-18	lipoprotein	other
eggNOG-mapper	UHGV-0387945_31	411473.RUMCAL_01917	193.0	0	N/A	N/A
PHROG	UHGV-0387945_32	phrog_532	67.1	2.9e-19	late transcriptional activator	transcription regulation
UniRef90	UHGV-0387945_32	UniRef90_U2KR36	193.0	0	Mor transcription activator family protein	N/A
eggNOG-mapper	UHGV-0387945_32	411473.RUMCAL_01916	193.0	0	Mor transcription activator	N/A
Pfam	UHGV-0387945_32	PF08765	N/A	N/A	Mor transcription activator family	Mor
COG	UHGV-0387945_32	COG5566	N/A	N/A	Transcriptional regulator, middle operon regulator (Mor) family	N/A
structural_annotation	UHGV-0387945_32	PF08765,NF040785,COG5566	N/A	N/A	N/A	N/A
PHROG	UHGV-0387945_33	phrog_286	77.8	1.8e-22	N/A	unknown function
UniRef90	UHGV-0387945_33	UniRef90_J6H7H7	104.0	2.07e-25	PF06252 family protein	N/A
eggNOG-mapper	UHGV-0387945_33	411473.RUMCAL_01915	294.0	0	N/A	N/A
Pfam	UHGV-0387945_33	PF06252	N/A	N/A	Bacteriophage Mu, GemA protein	GemA
structural_annotation	UHGV-0387945_33	PF06252	N/A	N/A	N/A	N/A
KOfam	UHGV-0387945_34	K02315	117.5	1.4e-34	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0387945_34	phrog_50	134.7	7.2e-40	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0387945_34	UniRef90_U2KRN6	484.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-0387945_34	411473.RUMCAL_01914	484.0	0	N/A	N/A
Pfam	UHGV-0387945_34	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-0387945_34	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0387945_34	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0387945_35	phrog_270	78.6	1.2e-22	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0387945_35	411473.RUMCAL_01913	213.0	0	HNH endonuclease	N/A
COG	UHGV-0387945_35	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0387945_36	phrog_5671	135.0	3.09999e-40	N/A	unknown function
eggNOG-mapper	UHGV-0387945_36	411473.RUMCAL_01912	251.0	0	N/A	N/A
PHROG	UHGV-0387945_37	phrog_6244	92.4	5.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-0387945_37	1232453.BAIF02000002_gene1275	82.4	2.49e-19	YqaJ viral recombinase family	N/A
COG	UHGV-0387945_37	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
PHROG	UHGV-0387945_38	phrog_4292	90.1	1.1e-26	N/A	unknown function
UniRef90	UHGV-0387945_38	UniRef90_A0A7G3VS96	52.8	0.0000000565	Putative NHN endonuclease	N/A
eggNOG-mapper	UHGV-0387945_38	411473.RUMCAL_01910	119.0	4.31e-35	N/A	N/A
KOfam	UHGV-0387945_39	K07132	59.0	7.5e-17	MuB; ATP-dependent target DNA activator	N/A
PHROG	UHGV-0387945_39	phrog_296	140.1	1.99993e-41	DNA transposition protein	integration and excision
UniRef90	UHGV-0387945_39	UniRef90_R7FFF2	589.0	0	AAA domain protein	N/A
eggNOG-mapper	UHGV-0387945_39	411473.RUMCAL_01909	589.0	0	AAA domain	N/A
Pfam	UHGV-0387945_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0387945_39	PF13401	N/A	N/A	AAA domain	AAA_22
COG	UHGV-0387945_39	COG2842	N/A	N/A	Bacteriophage DNA transposition protein, AAA+ family ATPase	N/A
structural_annotation	UHGV-0387945_39	PF13401,MF_01407,TIGR03015,COG2842	N/A	N/A	N/A	N/A
KOfam	UHGV-0387945_40	K07497	52.0	0.000000000000012	K07497; putative transposase	N/A
PHROG	UHGV-0387945_40	phrog_310	363.4	0	transposase	integration and excision
UniRef90	UHGV-0387945_40	UniRef90_U2LZ18	1313.0	0	Integrase catalytic domain-containing protein	N/A
eggNOG-mapper	UHGV-0387945_40	411473.RUMCAL_01908	1313.0	0	Mu transposase, C-terminal	N/A
PADLOC	UHGV-0387945_40	TnsB_0_V-K	62.0	8.3e-18	TnsB_0_V-K	CRISPR-CAS
Pfam	UHGV-0387945_40	PF09039	N/A	N/A	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
Pfam	UHGV-0387945_40	PF02914	N/A	N/A	Bacteriophage Mu transposase	DDE_2
Pfam	UHGV-0387945_40	PF09299	N/A	N/A	Mu transposase, C-terminal	Mu-transpos_C
COG	UHGV-0387945_40	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-0387945_40	PF02914,PF09039,PF09299,PF21531,NF033594,TIGR01764,COG3316,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0387945_42	K23779	57.7	2.9e-16	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0387945_42	phrog_3	47.7	0.00000000000065	transcriptional repressor	transcription regulation
UniRef90	UHGV-0387945_42	UniRef90_U2K8A4	136.0	1.56e-40	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0387945_42	596154.Alide2_1081	47.4	0.00000521	Helix-turn-helix domain	N/A
PADLOC	UHGV-0387945_42	retron_type_VI_hth_cluster2_1	52.5	0.000000000000014	N/A	Retron
Pfam	UHGV-0387945_42	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0387945_42	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0387945	Yes	30,143	52	100	1
UHGV-2095439	No	64,171	48	100	1
UHGV-0071140	No	54,446	47	100	1
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UHGV-0155160	No	41,796	49	100	1
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UHGV-2187334	No	39,070	50	100	1
UHGV-1980909	No	33,416	51	93	1
UHGV-2068423	No	33,300	52	92	1
UHGV-2092304	No	33,300	52	92	1
UHGV-2070105	No	33,291	52	92	1
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UHGV-2072092	No	32,529	52	90	1
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UHGV-2045563	No	28,770	52	85	1
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UHGV-2072236	No	28,770	52	85	1
UHGV-2105764	No	28,770	52	85	1
UHGV-2113346	No	28,770	52	85	1
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UHGV-2157171	No	28,770	52	85	1
UHGV-2161854	No	28,770	52	85	1
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UHGV-0389390	No	28,600	52	82	1
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UHGV-2093399	No	28,103	44	60	1
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UHGV-2015457	No	21,729	49	52	1
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UHGV-2042274	No	15,490	52	46	1
UHGV-0135471	No	13,963	52	41	1
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UHGV-2034590	No	12,255	54	33	1
UHGV-2034116	No	11,273	54	31	1
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UHGV-2071514	No	11,888	49	26	1
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UHGV-2078681	No	11,234	49	25	1
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