vOTU vOTU-052356

vOTU: vOTU-052356

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-052356
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00063 → vGENUS-00033 → vSUBGEN-00060 → vOTU-052356
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Veillonellaceae → Veillonella
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0390560
Biosample ID	N/A
Genome length (bp)	34,217 bps
CheckV completeness	100.00% (Complete)
CDS count	49
CDS density	95.38%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Veillonellaceae → Veillonella	Total connections	50	Host agreement	94
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0390560_1	phrog_9854	535.0	0	N/A	unknown function
UniRef90	UHGV-0390560_1	UniRef90_UPI001D087CF6	2887.0	0	phage tail tip lysozyme	N/A
eggNOG-mapper	UHGV-0390560_1	401526.TcarDRAFT_1293	957.0	0	protein secretion by the type IV secretion system	N/A
Pfam	UHGV-0390560_1	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0390560_1	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-0390560_1	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
structural_annotation	UHGV-0390560_1	PF18857,PF18013	N/A	N/A	N/A	N/A
PHROG	UHGV-0390560_2	phrog_199	40.5	0.00000000002	holin	lysis
UniRef90	UHGV-0390560_2	UniRef90_UPI001D062352	315.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0390560_2	883156.HMPREF9282_00970	226.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0390560_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
structural_annotation	UHGV-0390560_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0390560_3	K07273	159.2	0	acm; lysozyme	N/A
PHROG	UHGV-0390560_3	phrog_6745	125.6	4.1e-37	endolysin	lysis
UniRef90	UHGV-0390560_3	UniRef90_UPI001D0872FD	395.0	0	glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0390560_3	910314.HMPREF9220_0603	263.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0390560_3	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0390560_3	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0390560_3	PF01183,NF008377,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0390560_4	phrog_10797	188.1	0	N/A	unknown function
UniRef90	UHGV-0390560_4	UniRef90_A0A1B1I041	114.0	4.25e-28	Glycoprotease	N/A
eggNOG-mapper	UHGV-0390560_4	883156.HMPREF9282_01266	149.0	3.9937e-43	N/A	N/A
structural_annotation	UHGV-0390560_4	PF06531	N/A	N/A	N/A	N/A
KOfam	UHGV-0390560_6	K14059	213.7	0	int; integrase	N/A
PHROG	UHGV-0390560_6	phrog_1	203.8	0	integrase	integration and excision
UniRef90	UHGV-0390560_6	UniRef90_UPI001D0692F2	374.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0390560_6	1401067.HMPREF0872_00475	260.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0390560_6	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0390560_6	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0390560_6	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0390560_6	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0390560_8	phrog_87	58.3	9.9e-17	metallo-protease	other
UniRef90	UHGV-0390560_8	UniRef90_UPI001D082CAF	204.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0390560_8	203119.Cthe_2459	59.7	0.00000000123	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0390560_8	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0390560_8	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0390560_8	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0390560_9	phrog_8	51.3	0.000000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-0390560_9	UniRef90_UPI001D06C8D0	168.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0390560_9	552396.HMPREF0863_02446	73.6	5.82e-16	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0390560_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0390560_9	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0390560_10	UniRef90_UPI001D085387	99.4	3.05e-26	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0390560_10	1304866.K413DRAFT_3003	53.1	0.0000000425	addiction module antidote protein HigA	N/A
Pfam	UHGV-0390560_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0390560_10	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0390560_10	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0390560_11	phrog_7735	69.0	6.4e-20	excisionase	integration and excision
UniRef90	UHGV-0390560_11	UniRef90_UPI001D08DF46	170.0	0	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0390560_11	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0390560_11	PF12728,NF033787,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0390560_14	phrog_253	136.3	1.6e-40	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0390560_14	UniRef90_UPI001D06B209	258.0	0	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0390560_14	1226322.HMPREF1545_04074	94.0	4.41e-22	Siphovirus Gp157	N/A
Pfam	UHGV-0390560_14	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0390560_14	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0390560_15	phrog_14970	280.4	0	N/A	unknown function
UniRef90	UHGV-0390560_15	UniRef90_A0A1C5NV07	229.0	0	DNA damage response protein A	N/A
eggNOG-mapper	UHGV-0390560_15	428127.EUBDOL_01248	215.0	0	double-strand break repair protein	N/A
COG	UHGV-0390560_15	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0390560_15	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0390560_16	phrog_72	54.9	0.0000000000000012	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0390560_16	UniRef90_R5BGH3	122.0	6.69e-32	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0390560_16	445972.ANACOL_01825	93.6	1.59e-21	N/A	N/A
KOfam	UHGV-0390560_17	K07451	58.0	2e-16	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0390560_17	phrog_7370	54.6	0.0000000000000018	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0390560_17	UniRef90_UPI001D092C21	177.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0390560_17	1462526.BN990_01827	54.7	0.000000016	HNH nucleases	N/A
Pfam	UHGV-0390560_17	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0390560_17	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0390560_17	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0390560_18	phrog_1163	218.4	0	N/A	unknown function
UniRef90	UHGV-0390560_18	UniRef90_UPI001D075DB7	399.0	0	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0390560_18	1206110.L0P704_9CAUD	213.0	0	calcium ion binding	N/A
Pfam	UHGV-0390560_18	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0390560_18	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
structural_annotation	UHGV-0390560_18	PF09524,PF09681,TIGR02220,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-0390560_19	phrog_9804	76.0	5.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0390560_19	1273103.NM10_01154	57.8	0.0000000488	N/A	N/A
UniRef90	UHGV-0390560_20	UniRef90_UPI001BCCD3ED	51.6	0.000000683	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0390560_20	1220589.CD32_00445	47.4	0.00000481	Helix-turn-helix XRE-family like proteins	N/A
COG	UHGV-0390560_20	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0390560_20	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0390560_21	K03111	144.1	1.3999e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0390560_21	phrog_44	120.8	1.1e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0390560_21	UniRef90_UPI001D0945F7	241.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0390560_21	879309.HMPREF9199_0149	202.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0390560_21	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0390560_21	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0390560_21	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0390560_21	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0390560_21	PF00436,MF_00984,NF005406,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0390560_23	phrog_954	220.8	0	DNA methyltransferase	other
UniRef90	UHGV-0390560_23	UniRef90_UPI001D071710	294.0	0	class I SAM-dependent methyltransferase	N/A
eggNOG-mapper	UHGV-0390560_23	1401067.HMPREF0872_03435	259.0	0	methyltransferase	N/A
PADLOC	UHGV-0390560_23	MTase_II_00074	200.8	0	Type II methyltransferase	RM
Pfam	UHGV-0390560_23	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0390560_23	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-0390560_23	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0390560_24	PF11305,MF_01360	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0390560_26	PF19575,TIGR04381	N/A	N/A	N/A	N/A
PHROG	UHGV-0390560_27	phrog_799	76.4	3.5e-22	DNA methyltransferase	other
UniRef90	UHGV-0390560_27	UniRef90_A0A7C0U269	85.9	8.31e-18	tRNA (Adenine-N(6)-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0390560_27	883156.HMPREF9282_00530	216.0	0	N/A	N/A
Pfam	UHGV-0390560_27	PF13651	N/A	N/A	Adenine-specific methyltransferase EcoRI	EcoRI_methylase
structural_annotation	UHGV-0390560_27	PF05869,MF_00607,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-0390560_29	phrog_21026	66.5	3.7e-19	N/A	unknown function
KOfam	UHGV-0390560_30	K01160	42.7	0.000000000013	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0390560_30	phrog_34	40.9	0.000000000035	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0390560_30	UniRef90_UPI001D065A38	268.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0390560_30	1273103.NM10_01114	103.0	1.08e-26	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0390560_30	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
structural_annotation	UHGV-0390560_30	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0390560_31	K01520	137.2	1.3e-40	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0390560_31	phrog_135	143.3	9.59889e-43	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0390560_31	UniRef90_UPI001D07D29E	280.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0390560_31	66692.ABC2847	125.0	1.57e-34	deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
Pfam	UHGV-0390560_31	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0390560_31	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0390560_31	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0390560_31	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-0390560_32	phrog_774	77.3	2.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0390560_32	1435051.BMOU_0242	54.3	0.000000172	Helix-turn-helix domain	N/A
COG	UHGV-0390560_32	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
PHROG	UHGV-0390560_33	phrog_3878	40.2	0.000000000059	N/A	unknown function
PHROG	UHGV-0390560_34	phrog_36	45.7	0.0000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0390560_34	UniRef90_A0A6N2ZMD2	60.1	0.0000000148	Sigma-70, region 4	N/A
eggNOG-mapper	UHGV-0390560_34	706434.HMPREF9429_00383	61.2	0.000000000902	N/A	N/A
structural_annotation	UHGV-0390560_34	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0390560_36	phrog_309	121.5	3e-36	terminase small subunit	head and packaging
UniRef90	UHGV-0390560_36	UniRef90_UPI001B3C9B19	126.0	5.11e-35	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0390560_36	1123230.ARQJ01000012_gene2547	105.0	1.56e-27	transposase activity	N/A
COG	UHGV-0390560_36	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0390560_36	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0390560_37	K06909	132.3	4.3e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0390560_37	phrog_2	121.3	1.1e-35	terminase large subunit	head and packaging
UniRef90	UHGV-0390560_37	UniRef90_UPI001D073785	927.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0390560_37	401526.TcarDRAFT_1283	309.0	0	Phage terminase large subunit (GpA)	N/A
Pfam	UHGV-0390560_37	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0390560_37	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0390560_37	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0390560_39	phrog_156	341.6	0	portal protein	head and packaging
UniRef90	UHGV-0390560_39	UniRef90_F7NK66	379.0	0	Putative phage portal protein	N/A
eggNOG-mapper	UHGV-0390560_39	401526.TcarDRAFT_1284	390.0	0	Tfp pilus assembly protein FimV	N/A
COG	UHGV-0390560_39	COG3170	N/A	N/A	Type IV pilus assembly protein FimV	N/A
structural_annotation	UHGV-0390560_39	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
PHROG	UHGV-0390560_41	phrog_334	214.1	0	major head protein	head and packaging
UniRef90	UHGV-0390560_41	UniRef90_UPI000E723A53	546.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0390560_41	401526.TcarDRAFT_1286	249.0	0	N/A	N/A
Pfam	UHGV-0390560_41	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0390560_41	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0390560_41	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0390560_42	PF20387	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0390560_43	1123288.SOV_4c02700	53.1	0.00000156	N/A	N/A
structural_annotation	UHGV-0390560_43	PF20387	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0390560_44	1485543.JMME01000005_gene872	352.0	0	N/A	N/A
structural_annotation	UHGV-0390560_44	PF11134,MF_00923,NF000022,COG4257	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0390560_45	PF20747	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0390560_47	PF11039,MF_00084,NF000482,COG3818	N/A	N/A	N/A	N/A
UniRef90	UHGV-0390560_48	UniRef90_UPI001D07B8A4	669.0	0	Hint domain-containing protein	N/A
eggNOG-mapper	UHGV-0390560_48	1123288.SOV_4c02760	110.0	2.11e-23	N/A	N/A
Pfam	UHGV-0390560_48	PF13403	N/A	N/A	Hint domain	Hint_2
structural_annotation	UHGV-0390560_48	PF07591,NF038136,TIGR03017,COG4942	N/A	N/A	N/A	N/A
Pfam	UHGV-0390560_49	PF00959	N/A	N/A	Phage lysozyme	Phage_lysozyme

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0390560	Yes	34,217	40	100	1
UHGV-0389927	No	37,207	39	100	1
UHGV-0389086	No	17,159	41	50	1