vOTU vOTU-052542

vOTU: vOTU-052542

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-052542
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00079 → vGENUS-00402 → vSUBGEN-21967 → vOTU-052542
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0392033
Biosample ID	N/A
Genome length (bp)	41,256 bps
CheckV completeness	100.00% (Complete)
CDS count	69
CDS density	91.06%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	200	Host agreement	90.5
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0392033_1	phrog_9534	142.0	5.20022e-42	head protein	head and packaging
eggNOG-mapper	UHGV-0392033_1	748224.HMPREF9436_03323	95.9	5.15e-20	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-0392033_2	phrog_538	107.1	1.6e-31	minor tail protein	tail
UniRef90	UHGV-0392033_2	UniRef90_UPI001C113FEF	233.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0392033_2	665956.HMPREF1032_02940	97.1	7.66e-20	N/A	N/A
Pfam	UHGV-0392033_2	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0392033_2	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0392033_3	phrog_33	49.6	0.000000000000083	distal tail protein Dit	tail
UniRef90	UHGV-0392033_3	UniRef90_UPI001C0FCFFA	256.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0392033_3	1033737.CAEV01000029_gene285	92.0	6.9e-19	Phage tail protein	N/A
COG	UHGV-0392033_3	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0392033_3	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0392033_4	phrog_6900	230.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0392033_4	UniRef90_A0A0D0SGC8	316.0	0	Phage minor tail protein	N/A
eggNOG-mapper	UHGV-0392033_4	1437608.BBIA_2554	292.0	0	phage tail tape measure protein	N/A
COG	UHGV-0392033_4	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0392033_4	PF20155,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-0392033_5	phrog_20920	99.3	2.6e-29	N/A	unknown function
eggNOG-mapper	UHGV-0392033_5	1121335.Clst_0399	97.4	1.42e-24	N/A	N/A
structural_annotation	UHGV-0392033_5	PF16674	N/A	N/A	N/A	N/A
PHROG	UHGV-0392033_7	phrog_18646	51.2	0.000000000000018	N/A	unknown function
PHROG	UHGV-0392033_8	phrog_885	75.0	8.2e-22	major tail protein	tail
UniRef90	UHGV-0392033_8	UniRef90_A0A843J9F0	189.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0392033_8	1504822.CCNO01000012_gene492	218.0	0	N/A	N/A
structural_annotation	UHGV-0392033_8	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0392033_9	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0392033_10	phrog_17977	83.7	1.4e-24	N/A	unknown function
UniRef90	UHGV-0392033_10	UniRef90_UPI00141211AB	93.6	2.63e-22	head-tail adaptor protein	N/A
structural_annotation	UHGV-0392033_10	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0392033_12	phrog_544	123.5	1.9e-36	major head protein	head and packaging
UniRef90	UHGV-0392033_12	UniRef90_A0A1C6B5R0	344.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0392033_12	476272.RUMHYD_01776	315.0	0	N/A	N/A
structural_annotation	UHGV-0392033_12	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0392033_13	phrog_194	48.5	0.00000000000016	head scaffolding protein	head and packaging
UniRef90	UHGV-0392033_13	UniRef90_A0A6B9SU02	113.0	1e-27	Fibronectin autolysin	N/A
structural_annotation	UHGV-0392033_13	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0392033_14	phrog_478	127.1	7.4e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0392033_14	UniRef90_A0A373Q857	166.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0392033_14	1111121.HMPREF1247_0834	95.1	2.4e-23	N/A	N/A
PHROG	UHGV-0392033_15	phrog_5	76.9	3.8e-22	tail completion or Neck1 protein	connector
UniRef90	UHGV-0392033_15	UniRef90_UPI001411BC8C	188.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0392033_15	1443125.Z962_05620	92.4	2.94e-22	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0392033_15	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0392033_15	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0392033_15	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0392033_18	phrog_2468	111.2	2.7e-33	head morphogenesis	head and packaging
UniRef90	UHGV-0392033_18	UniRef90_A0A7X5E1T7	416.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0392033_18	1504822.CCNO01000013_gene286	185.0	0	cell adhesion	N/A
Pfam	UHGV-0392033_18	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0392033_18	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0392033_18	PF06152,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0392033_19	phrog_64	171.4	0	portal protein	head and packaging
UniRef90	UHGV-0392033_19	UniRef90_UPI0018A8A301	597.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0392033_19	673376.F2VHW1_9CAUD	205.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0392033_19	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0392033_19	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0392033_20	K06909	403.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0392033_20	phrog_3717	156.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0392033_20	UniRef90_UPI001C3B9235	609.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0392033_20	411471.SUBVAR_06507	562.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0392033_20	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0392033_20	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0392033_20	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0392033_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0392033_20	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0392033_21	phrog_606	93.5	2.2e-27	terminase small subunit	head and packaging
UniRef90	UHGV-0392033_21	UniRef90_UPI00195648BB	177.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0392033_21	445972.ANACOL_01838	148.0	5.74532e-44	DNA-packaging protein gp3	N/A
Pfam	UHGV-0392033_21	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0392033_21	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0392033_22	phrog_36	73.4	3.5e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0392033_22	UniRef90_A0A8J6J9G8	52.8	0.00000649	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0392033_22	748224.HMPREF9436_01463	52.8	0.000000997	N/A	N/A
Pfam	UHGV-0392033_22	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0392033_22	PF04545,PF18323,MF_00674,NF009172,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0392033_25	phrog_16244	43.4	0.0000000000061	N/A	unknown function
structural_annotation	UHGV-0392033_26	PF16069,NF040508	N/A	N/A	N/A	N/A
PHROG	UHGV-0392033_27	phrog_9958	110.4	1.2e-32	N/A	unknown function
UniRef90	UHGV-0392033_27	UniRef90_UPI001D08A241	149.0	2.84043e-42	N/A	N/A
eggNOG-mapper	UHGV-0392033_27	1160721.RBI_I01591	138.0	7.52e-39	N/A	N/A
structural_annotation	UHGV-0392033_27	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0392033_28	phrog_424	112.7	3.4e-33	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0392033_28	UniRef90_R6PFX4	429.0	0	Putative phage reductase	N/A
eggNOG-mapper	UHGV-0392033_28	760568.Desku_0566	73.9	0.00000000000135	N/A	N/A
PADLOC	UHGV-0392033_28	SspD_00001	59.4	1.3e-16	SspD	SSP
Pfam	UHGV-0392033_28	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0392033_28	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0392033_28	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
Pfam	UHGV-0392033_33	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
Pfam	UHGV-0392033_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0392033_33	PF01381,PF08667,MF_00535,NF041951,NF007408,COG1476,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0392033_34	K01160	59.2	1.3e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0392033_34	phrog_34	59.1	9.5e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0392033_34	UniRef90_A0A3G2R5K0	127.0	2.73e-35	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0392033_34	796940.HMPREF9628_00163	103.0	1.06e-26	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0392033_34	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0392033_34	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0392033_34	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0392033_35	K03111	136.6	2.8e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0392033_35	phrog_44	131.0	4.4e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0392033_35	UniRef90_A0A6N8H4T4	221.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0392033_35	411471.SUBVAR_04646	211.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0392033_35	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0392033_35	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0392033_35	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0392033_35	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0392033_35	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0392033_36	phrog_9804	42.8	0.0000000000077	N/A	unknown function
PHROG	UHGV-0392033_37	phrog_186	66.6	4.4e-19	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0392033_37	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0392033_37	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0392033_37	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-0392033_37	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0392033_37	PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-0392033_38	phrog_392	48.4	0.0000000000002	metal-dependent hydrolase	other
eggNOG-mapper	UHGV-0392033_38	1408437.JNJN01000039_gene371	74.3	2.9e-16	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
COG	UHGV-0392033_38	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
KOfam	UHGV-0392033_39	K07455	178.8	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0392033_39	phrog_148	207.6	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0392033_39	UniRef90_A0A329URJ6	424.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0392033_39	1408437.JNJN01000039_gene372	367.0	0	RecT family	N/A
Pfam	UHGV-0392033_39	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0392033_39	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0392033_39	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0392033_39	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0392033_40	phrog_674	148.8	3.64338e-44	N/A	unknown function
UniRef90	UHGV-0392033_40	UniRef90_UPI000553F60F	187.0	0	N/A	N/A
eggNOG-mapper	UHGV-0392033_40	1408437.JNJN01000039_gene373	187.0	0	N/A	N/A
Pfam	UHGV-0392033_40	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0392033_40	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0392033_42	phrog_27197	46.1	0.000000000001	N/A	unknown function
eggNOG-mapper	UHGV-0392033_42	394503.Ccel_3068	65.5	0.00000000000123	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0392033_42	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
PHROG	UHGV-0392033_43	phrog_4433	181.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0392033_43	573061.Clocel_3578	113.0	2.12e-26	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0392033_43	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
UniRef90	UHGV-0392033_45	UniRef90_A0A367GIH6	82.0	2.79e-18	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0392033_45	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0392033_45	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0392033_45	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0392033_47	K22300	49.4	0.0000000000001	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0392033_47	phrog_8	52.3	0.000000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-0392033_47	UniRef90_A0A810PZI0	79.7	2.26e-18	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0392033_47	693746.OBV_25500	57.0	0.000000000388	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0392033_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0392033_47	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0392033_47	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0392033_52	PF12688	N/A	N/A	N/A	N/A
KOfam	UHGV-0392033_53	K14059	160.4	0	int; integrase	N/A
PHROG	UHGV-0392033_53	phrog_1	165.9	0	integrase	integration and excision
UniRef90	UHGV-0392033_53	UniRef90_UPI001F166C84	399.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0392033_53	693746.OBV_25530	280.0	0	Phage integrase family	N/A
Pfam	UHGV-0392033_53	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0392033_53	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0392033_53	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0392033_55	1226322.HMPREF1545_00079	67.8	0.000000000000454	N/A	N/A
structural_annotation	UHGV-0392033_56	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0392033_57	phrog_20016	193.8	0	N/A	unknown function
UniRef90	UHGV-0392033_57	UniRef90_A0A285PT46	196.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0392033_57	1226322.HMPREF1545_00077	172.0	0	N/A	N/A
structural_annotation	UHGV-0392033_57	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0392033_58	phrog_16490	150.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0392033_58	397290.C810_05212	139.0	2.26e-37	N/A	N/A
PHROG	UHGV-0392033_59	phrog_22984	74.4	1.8e-22	N/A	unknown function
PHROG	UHGV-0392033_60	phrog_21718	117.0	1.2e-34	N/A	unknown function
eggNOG-mapper	UHGV-0392033_60	397290.C810_05210	100.0	1.22e-24	N/A	N/A
PHROG	UHGV-0392033_61	phrog_3754	94.3	1.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0392033_61	476272.RUMHYD_01764	148.0	1.26117e-44	N/A	N/A
KOfam	UHGV-0392033_62	K07684	42.2	0.000000000014	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	N/A
Pfam	UHGV-0392033_62	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0392033_62	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
PHROG	UHGV-0392033_63	phrog_13256	55.6	6.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-0392033_63	1226322.HMPREF1545_00132	52.4	0.0000000389	N/A	N/A
eggNOG-mapper	UHGV-0392033_64	33035.JPJF01000090_gene94	62.0	0.0000000000305	N/A	N/A
KOfam	UHGV-0392033_65	K07273	134.1	1.6e-39	acm; lysozyme	N/A
PHROG	UHGV-0392033_65	phrog_291	104.2	1.1e-30	endolysin	lysis
UniRef90	UHGV-0392033_65	UniRef90_A0A1Q6T343	424.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0392033_65	1408322.JHYK01000015_gene1912	132.0	2.29e-31	Glycosyl hydrolase, family 25	N/A
Pfam	UHGV-0392033_65	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-0392033_65	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0392033_65	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0392033_65	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0392033_67	476272.RUMHYD_00002	84.7	0.0000000000000526	N/A	N/A
structural_annotation	UHGV-0392033_67	PF10651	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0392033	Yes	41,256	49	100	1
UHGV-1864281	No	41,057	49	100	1