vOTU vOTU-054165

vOTU: vOTU-054165

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-054165
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00089 → vGENUS-00756 → vSUBGEN-23572 → vOTU-054165
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1350129
Biosample ID	SAMEA3449223
Genome length (bp)	32,856 bps
CheckV completeness	100.00% (Complete)
CDS count	46
CDS density	93.54%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	1288	Host agreement	97.59
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminococcus_D → Ruminococcus_D bicirculans	Total connections	291	Host agreement	99.66

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1350129_1	K14059	140.6	1.79997e-41	int; integrase	N/A
PHROG	UHGV-1350129_1	phrog_1	169.0	0	integrase	integration and excision
UniRef90	UHGV-1350129_1	UniRef90_A0A373XXE7	795.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1350129_1	693746.OBV_41260	251.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1350129_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1350129_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1350129_1	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-1350129_2	UniRef90_UPI001C126F91	59.7	0.000000227	copper amine oxidase N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1350129_2	445972.ANACOL_01856	111.0	8.33e-27	N/A	N/A
PHROG	UHGV-1350129_3	phrog_87	70.3	2e-20	metallo-protease	other
UniRef90	UHGV-1350129_3	UniRef90_A0A374HVM5	261.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1350129_3	428125.CLOLEP_02739	101.0	1.35e-25	N/A	N/A
Pfam	UHGV-1350129_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1350129_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1350129_3	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-1350129_4	K07729	51.5	0.000000000000021	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1350129_4	phrog_8	69.0	9.4e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1350129_4	UniRef90_UPI0019D26C1B	155.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1350129_4	203119.Cthe_0364	77.4	7.71e-16	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-1350129_4	retron_type_VI_hth_cluster2_1	42.1	0.000000000019	N/A	Retron
Pfam	UHGV-1350129_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1350129_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1350129_4	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1350129_5	K07729	47.5	0.00000000000036	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-1350129_5	UniRef90_A0A847PN47	74.7	6.75e-16	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1350129_5	718252.FP2_16270	66.6	0.000000000000347	sequence-specific DNA binding	N/A
Pfam	UHGV-1350129_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1350129_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-1350129_6	K00390	48.4	8.5e-22	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1350129_6	phrog_424	120.4	1.2e-35	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1350129_6	UniRef90_UPI001899D561	459.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1350129_6	397291.C804_05723	272.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-1350129_6	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1350129_6	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1350129_6	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1350129_11	596152.DesU5LDRAFT_1910	79.3	0.00000000000000166	N/A	N/A
structural_annotation	UHGV-1350129_11	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
KOfam	UHGV-1350129_13	K03546	60.1	2.7e-17	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1350129_13	phrog_1499	473.7	0	N/A	unknown function
UniRef90	UHGV-1350129_13	UniRef90_A0A1C6E8X2	752.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-1350129_13	641112.ACOK01000073_gene2873	520.0	0	domain protein	N/A
Pfam	UHGV-1350129_13	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1350129_13	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1350129_13	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-1350129_14	phrog_124	242.9	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1350129_14	UniRef90_UPI000F52E538	479.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1350129_14	1235792.C808_05390	425.0	0	AAA domain	N/A
Pfam	UHGV-1350129_14	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1350129_14	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1350129_15	phrog_2698	190.8	0	N/A	unknown function
UniRef90	UHGV-1350129_15	UniRef90_UPI001D0882DA	231.0	0	N/A	N/A
eggNOG-mapper	UHGV-1350129_15	742723.HMPREF9477_00927	160.0	0	N/A	N/A
structural_annotation	UHGV-1350129_15	PF17426,NF005674	N/A	N/A	N/A	N/A
KOfam	UHGV-1350129_16	K17677	347.7	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-1350129_16	phrog_16	282.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1350129_16	UniRef90_A0A1C6E943	1046.0	0	Type-1 restriction enzyme R protein	N/A
eggNOG-mapper	UHGV-1350129_16	1235792.C808_05388	817.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-1350129_16	mREase_IV_00005	122.6	3.8e-36	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1350129_16	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1350129_16	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1350129_16	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1350129_16	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-1350129_17	K07505	434.4	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-1350129_17	phrog_2597	1197.7	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1350129_17	UniRef90_A0A1C6E992	1499.0	0	Regulatory protein repA	N/A
eggNOG-mapper	UHGV-1350129_17	394503.Ccel_3304	1021.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-1350129_17	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-1350129_17	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-1350129_17	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-1350129_17	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
PHROG	UHGV-1350129_18	phrog_16687	96.6	9.6e-29	N/A	unknown function
eggNOG-mapper	UHGV-1350129_18	1123511.KB905868_gene197	76.3	3.92e-17	N/A	N/A
PHROG	UHGV-1350129_19	phrog_140	85.0	9.4e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1350129_19	UniRef90_A0A373Y8T3	222.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1350129_19	411462.DORLON_00806	207.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1350129_19	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1350129_19	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1350129_19	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1350129_20	PF08141,MF_00667,TIGR02861,COG0231	N/A	N/A	N/A	N/A
PHROG	UHGV-1350129_21	phrog_986	80.3	1.8e-23	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1350129_21	UniRef90_A0A373XQS7	227.0	0	N/A	N/A
eggNOG-mapper	UHGV-1350129_21	2754.EH55_06950	64.7	0.00000000000709	N/A	N/A
Pfam	UHGV-1350129_21	PF12961	N/A	N/A	N/A	DUF3850
structural_annotation	UHGV-1350129_21	PF12961,MF_00771,NF003443,COG4043	N/A	N/A	N/A	N/A
PHROG	UHGV-1350129_22	phrog_36	46.1	0.0000000000006	transcriptional regulator	transcription regulation
UniRef90	UHGV-1350129_22	UniRef90_A0A374HLM1	240.0	0	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-1350129_22	1304880.JAGB01000002_gene2225	51.6	0.000002	N/A	N/A
structural_annotation	UHGV-1350129_22	PF07374	N/A	N/A	N/A	N/A
PHROG	UHGV-1350129_23	phrog_338	95.9	4e-28	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1350129_23	UniRef90_A0A373V3S6	234.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1350129_23	1280698.AUJS01000007_gene1032	174.0	0	HNH endonuclease domain protein	N/A
Pfam	UHGV-1350129_23	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1350129_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1350129_24	phrog_104	251.2	0	portal protein	head and packaging
UniRef90	UHGV-1350129_24	UniRef90_A0A373V3S0	798.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1350129_24	1280698.AUJS01000007_gene1033	492.0	0	Phage portal protein, SPP1 Gp6-like	N/A
structural_annotation	UHGV-1350129_24	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1350129_25	phrog_2494	166.4	0	minor head protein	head and packaging
UniRef90	UHGV-1350129_25	UniRef90_UPI001F3BD4CE	134.0	5e-32	polymorphic toxin type 50 domain-containing protein	N/A
eggNOG-mapper	UHGV-1350129_25	1214184.ALKY01000039_gene923	134.0	1.77e-32	N/A	N/A
eggNOG-mapper	UHGV-1350129_26	936596.HMPREF1495_2378	81.6	1.34e-19	N/A	N/A
PHROG	UHGV-1350129_27	phrog_872	93.5	2.3e-27	N/A	unknown function
UniRef90	UHGV-1350129_27	UniRef90_A0A373V416	166.0	0	N/A	N/A
eggNOG-mapper	UHGV-1350129_27	1226322.HMPREF1545_00781	129.0	2.49e-36	N/A	N/A
Pfam	UHGV-1350129_27	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-1350129_27	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-1350129_27	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-1350129_28	phrog_17688	302.3	0	N/A	unknown function
UniRef90	UHGV-1350129_28	UniRef90_A0A373V412	845.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1350129_28	665950.HMPREF1025_02532	511.0	0	phage terminase, large subunit	N/A
COG	UHGV-1350129_28	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1350129_28	PF20441,PF03354,MF_04146,NF033889,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1350129_29	phrog_233	64.9	2e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-1350129_29	UniRef90_A0A7Z2B590	77.0	0.00000000000000407	N/A	N/A
eggNOG-mapper	UHGV-1350129_29	1423775.BAMN01000011_gene605	66.6	0.00000000000645	N/A	N/A
Pfam	UHGV-1350129_29	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1350129_29	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1350129_30	phrog_32396	126.8	6.1e-38	N/A	unknown function
UniRef90	UHGV-1350129_30	UniRef90_A0A373V3S9	583.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1350129_30	936375.HMPREF1152_0679	325.0	0	Phage capsid family	N/A
Pfam	UHGV-1350129_30	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
structural_annotation	UHGV-1350129_30	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1350129_31	phrog_137	53.3	0.0000000000000035	head-tail adaptor Ad1	connector
UniRef90	UHGV-1350129_31	UniRef90_R6C7E8	160.0	0	Phage protein Gp19/Gp15/Gp42	N/A
eggNOG-mapper	UHGV-1350129_31	873448.STRPO_0287	87.8	3.25e-20	Phage protein Gp19/Gp15/Gp42	N/A
Pfam	UHGV-1350129_31	PF09355	N/A	N/A	N/A	Phage_Gp19
structural_annotation	UHGV-1350129_31	PF09355	N/A	N/A	N/A	N/A
PHROG	UHGV-1350129_32	phrog_501	78.9	4.9e-23	head closure Hc1	connector
UniRef90	UHGV-1350129_32	UniRef90_R6CEU4	148.0	4.06377e-44	N/A	N/A
eggNOG-mapper	UHGV-1350129_32	43685.Q38120_BPR1T	136.0	4.41e-40	N/A	N/A
structural_annotation	UHGV-1350129_32	PF12206,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1350129_33	phrog_387	59.9	3.8e-17	neck protein	connector
eggNOG-mapper	UHGV-1350129_33	1423775.BAMN01000011_gene600	62.0	0.00000000000974	N/A	N/A
PHROG	UHGV-1350129_34	phrog_123	61.8	1.2e-17	tail terminator	connector
UniRef90	UHGV-1350129_34	UniRef90_A0A2A5RIK6	111.0	1.36e-29	N/A	N/A
eggNOG-mapper	UHGV-1350129_34	1321820.HMPREF1983_00928	115.0	9.8e-32	N/A	N/A
structural_annotation	UHGV-1350129_34	PF06141	N/A	N/A	N/A	N/A
PHROG	UHGV-1350129_35	phrog_117	163.0	0	major tail protein	tail
UniRef90	UHGV-1350129_35	UniRef90_A0A373V4D0	367.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1350129_35	1121864.OMO_02158	191.0	0	domain, Protein	N/A
COG	UHGV-1350129_35	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1350129_35	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1350129_36	phrog_1526	84.9	6e-25	N/A	unknown function
UniRef90	UHGV-1350129_36	UniRef90_G2SN49	65.1	0.0000000000068	N/A	N/A
eggNOG-mapper	UHGV-1350129_36	665950.HMPREF1025_02524	80.9	7.45e-19	N/A	N/A
PHROG	UHGV-1350129_37	phrog_1633	137.9	3.20001e-41	N/A	unknown function
UniRef90	UHGV-1350129_37	UniRef90_A0A139QHL2	124.0	3.32e-34	N/A	N/A
eggNOG-mapper	UHGV-1350129_37	873448.STRPO_0293	111.0	5.22e-30	N/A	N/A
Pfam	UHGV-1350129_37	PF17318	N/A	N/A	N/A	DUF5361
structural_annotation	UHGV-1350129_37	PF17318	N/A	N/A	N/A	N/A
PHROG	UHGV-1350129_38	phrog_6900	265.7	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1350129_38	768726.HMPREF9178_1054	310.0	0	phage tail tape measure protein	N/A
COG	UHGV-1350129_38	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1350129_38	PF16535	N/A	N/A	N/A	N/A
PHROG	UHGV-1350129_39	phrog_1194	49.9	0.000000000000045	N/A	unknown function
eggNOG-mapper	UHGV-1350129_39	1160721.RBI_II00527	103.0	7.48e-27	N/A	N/A
structural_annotation	UHGV-1350129_39	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1350129_40	phrog_9680	55.6	2.8e-17	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-1350129_40	1160721.RBI_II00526	512.0	0	N/A	N/A
structural_annotation	UHGV-1350129_40	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1350129_42	1410617.JHXH01000006_gene232	81.6	0.000000000000155	N/A	N/A
structural_annotation	UHGV-1350129_42	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1350129_44	phrog_134	61.1	1.3e-17	N/A	unknown function
UniRef90	UHGV-1350129_44	UniRef90_UPI00189C704B	87.4	7.73e-22	XkdX family protein	N/A
eggNOG-mapper	UHGV-1350129_44	478749.BRYFOR_07560	54.3	0.00000000125	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-1350129_44	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-1350129_44	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
structural_annotation	UHGV-1350129_44	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-1350129_45	phrog_199	81.0	1.2e-23	holin	lysis
UniRef90	UHGV-1350129_45	UniRef90_A0A373XMP0	280.0	0	Holin	N/A
eggNOG-mapper	UHGV-1350129_45	1160721.RBI_I01565	183.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1350129_45	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1350129_45	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1350129_45	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1350129_45	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1350129_46	phrog_297	168.0	0	holin	lysis
UniRef90	UHGV-1350129_46	UniRef90_A0A356CY82	462.0	0	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-1350129_46	1160721.RBI_II00521	93.6	5.2e-20	hydrolase, family 25	N/A
Pfam	UHGV-1350129_46	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-1350129_46	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1350129_46	PF06940,TIGR02594,COG3942	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1350129	Yes	32,856	46	100	1
UHGV-1508822	No	29,348	45	85	1