vOTU vOTU-054220

vOTU: vOTU-054220

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-054220
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00124 → vGENUS-00131 → vSUBGEN-19438 → vOTU-054220
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0088638
Biosample ID	SAMEA3360697
Genome length (bp)	41,553 bps
CheckV completeness	100.00% (Complete)
CDS count	66
CDS density	91.38%
tRNA count	2
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	381	Host agreement	97.9
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium prausnitzii	Total connections	4	Host agreement	75

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0088638_1	K10804	56.7	2.9e-16	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	N/A
PHROG	UHGV-0088638_1	phrog_5240	80.7	1.4e-23	tail fiber protein	tail
eggNOG-mapper	UHGV-0088638_1	1410650.JHWL01000010_gene2723	71.6	0.000000000192	N/A	N/A
Pfam	UHGV-0088638_1	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
structural_annotation	UHGV-0088638_1	PF13472,NF007819,COG2755	N/A	N/A	N/A	N/A
PHROG	UHGV-0088638_3	phrog_1067	174.5	0	minor head protein	head and packaging
UniRef90	UHGV-0088638_3	UniRef90_A0A2A7AM44	702.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0088638_3	1123263.AUKY01000068_gene489	188.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0088638_3	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0088638_3	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0088638_3	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0088638_3	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0088638_4	phrog_33	78.2	1.9e-22	distal tail protein Dit	tail
UniRef90	UHGV-0088638_4	UniRef90_A0A173Z1X4	142.0	2.74e-38	Phage-related protein	N/A
eggNOG-mapper	UHGV-0088638_4	908340.HMPREF9406_2569	91.7	1.3e-19	phage tail	N/A
NCBIFam	UHGV-0088638_4	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0088638_4	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0088638_4	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0088638_5	phrog_1686	86.2	3.3e-25	tail length tape measure protein	tail
UniRef90	UHGV-0088638_5	UniRef90_A0A2A7ALS3	860.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0088638_5	596328.HMPREF0578_1241	160.0	2.91e-37	phage tail tape measure protein	N/A
Pfam	UHGV-0088638_5	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0088638_5	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0088638_5	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0088638_5	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0088638_8	phrog_88	92.5	5.1e-27	major tail protein	tail
UniRef90	UHGV-0088638_8	UniRef90_G9YSC5	105.0	4.94e-25	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0088638_8	349161.Dred_2600	62.8	0.00000000358	N/A	N/A
NCBIFam	UHGV-0088638_8	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0088638_8	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0088638_9	phrog_5	47.0	0.00000000000021	tail completion or Neck1 protein	connector
UniRef90	UHGV-0088638_9	UniRef90_A0A1C6FG30	114.0	5.49e-29	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0088638_9	33035.JPJF01000039_gene277	110.0	2.08e-28	N/A	N/A
structural_annotation	UHGV-0088638_9	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0088638_10	999413.HMPREF1094_02005	70.1	0.0000000000000354	N/A	N/A
structural_annotation	UHGV-0088638_10	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0088638_11	phrog_19734	94.5	1.1e-27	N/A	unknown function
UniRef90	UHGV-0088638_11	UniRef90_A0A0D8I708	80.5	6.66e-17	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0088638_11	349161.Dred_2602	74.7	0.00000000000000194	N/A	N/A
structural_annotation	UHGV-0088638_11	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0088638_12	phrog_749	57.6	2.2e-16	N/A	unknown function
UniRef90	UHGV-0088638_12	UniRef90_W7B6R4	54.7	0.000000184	Gp6 protein	N/A
eggNOG-mapper	UHGV-0088638_12	1211817.CCAT010000053_gene2133	65.1	0.0000000000028	N/A	N/A
PHROG	UHGV-0088638_13	phrog_10	129.5	2.3e-38	major head protein	head and packaging
UniRef90	UHGV-0088638_13	UniRef90_A0A2A7B712	721.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0088638_13	1235792.C808_00086	441.0	0	Phage capsid family	N/A
Pfam	UHGV-0088638_13	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0088638_13	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0088638_13	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0088638_13	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0088638_13	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0088638_14	K01358	75.9	7.7e-22	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0088638_14	phrog_94	128.4	8.8e-38	head maturation protease	head and packaging
UniRef90	UHGV-0088638_14	UniRef90_UPI001C0ECD60	131.0	1.21e-33	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0088638_14	1232452.BAIB02000007_gene1626	124.0	5.29e-32	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0088638_14	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0088638_14	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0088638_14	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0088638_15	phrog_12	127.4	1e-37	portal protein	head and packaging
UniRef90	UHGV-0088638_15	UniRef90_A0A2A7B6S8	557.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0088638_15	349161.Dred_2606	258.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0088638_15	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0088638_15	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0088638_15	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0088638_15	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0088638_16	phrog_9	242.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0088638_16	UniRef90_A0A2A7ALT4	1056.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0088638_16	610130.Closa_0741	632.0	0	Phage Terminase	N/A
Pfam	UHGV-0088638_16	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0088638_16	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0088638_16	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0088638_17	phrog_13845	56.9	2.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-0088638_17	1399942.U3PDR2_9CAUD	70.9	0.0000000000000359	N/A	N/A
structural_annotation	UHGV-0088638_17	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0088638_19	phrog_119	57.6	2e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088638_19	UniRef90_A0A2A7B6I3	234.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0088638_19	610130.Closa_0739	108.0	4.44e-29	HNH nucleases	N/A
Pfam	UHGV-0088638_19	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0088638_19	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0088638_24	PF04545	N/A	N/A	N/A	N/A
KOfam	UHGV-0088638_25	K03497	90.6	3.1e-26	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0088638_25	phrog_4715	114.1	1e-33	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088638_25	UniRef90_A0A2A7B6Q0	364.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0088638_25	411471.SUBVAR_05842	184.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0088638_25	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0088638_25	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0088638_25	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
UniRef90	UHGV-0088638_26	UniRef90_UPI001C009709	113.0	2.61e-29	N/A	N/A
KOfam	UHGV-0088638_27	K03496	206.1	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0088638_27	phrog_164	155.4	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088638_27	UniRef90_A0A2A7B6H3	358.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0088638_27	411471.SUBVAR_05839	228.0	0	AAA domain	N/A
Pfam	UHGV-0088638_27	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0088638_27	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0088638_27	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
PHROG	UHGV-0088638_29	phrog_6969	58.4	1e-16	N/A	unknown function
eggNOG-mapper	UHGV-0088638_29	748224.HMPREF9436_00735	157.0	2.25609e-43	N/A	N/A
Pfam	UHGV-0088638_29	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
Pfam	UHGV-0088638_29	PF19481	N/A	N/A	N/A	DUF6017
COG	UHGV-0088638_29	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0088638_29	PF19481,PF01978,MF_01819,TIGR01610,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0088638_30	K03111	147.2	1.69557e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0088638_30	phrog_44	150.4	8.40779e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0088638_30	UniRef90_D4K451	211.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0088638_30	718252.FP2_06770	211.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0088638_30	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0088638_30	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0088638_30	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0088638_30	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0088638_30	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0088638_31	phrog_7566	86.5	2.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0088638_31	411471.SUBVAR_05830	106.0	1.53e-28	N/A	N/A
PHROG	UHGV-0088638_33	phrog_72	47.4	0.0000000000004	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0088638_33	411471.SUBVAR_05829	136.0	4.16e-38	N/A	N/A
structural_annotation	UHGV-0088638_33	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0088638_34	phrog_14970	45.8	0.0000000000013	N/A	unknown function
COG	UHGV-0088638_34	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-0088638_34	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0088638_37	PF10346,MF_00337,NF010671	N/A	N/A	N/A	N/A
KOfam	UHGV-0088638_41	K04763	204.7	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0088638_41	phrog_1	183.2	0	integrase	integration and excision
UniRef90	UHGV-0088638_41	UniRef90_A0A8E3SJJ8	291.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0088638_41	565653.EGBG_01953	196.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0088638_41	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0088638_41	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0088638_41	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0088638_41	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
KOfam	UHGV-0088638_42	K03427	53.5	0.0000000000000037	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0088638_42	phrog_5696	288.6	0	N/A	unknown function
UniRef90	UHGV-0088638_42	UniRef90_A0A1Q6PTX9	314.0	0	N6_Mtase domain-containing protein	N/A
eggNOG-mapper	UHGV-0088638_42	718252.FP2_00930	317.0	0	N-6 DNA Methylase	N/A
Pfam	UHGV-0088638_42	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0088638_42	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0088638_42	COG0286	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0088638_45	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0088638_46	K22300	47.6	0.00000000000032	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0088638_46	UniRef90_A0A2A7AM72	91.3	1.67e-21	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0088638_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0088638_46	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0088638_46	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0088638_47	PF21441,TIGR04176,COG1846	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0088638_50	COG5342	N/A	N/A	N/A	N/A
KOfam	UHGV-0088638_53	K07729	41.0	0.000000000026	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0088638_53	phrog_1373	42.8	0.000000000004	transcriptional regulator	transcription regulation
UniRef90	UHGV-0088638_53	UniRef90_A0A2A7AM70	189.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0088638_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0088638_53	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0088638_53	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0088638_54	K14059	181.7	0	int; integrase	N/A
PHROG	UHGV-0088638_54	phrog_1	165.8	0	integrase	integration and excision
UniRef90	UHGV-0088638_54	UniRef90_A0A367GI93	222.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0088638_54	1507.HMPREF0262_00307	162.0	1.80768e-43	Phage integrase family	N/A
Pfam	UHGV-0088638_54	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0088638_54	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0088638_54	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0088638_55	1378168.N510_03079	90.5	1.07e-19	N/A	N/A
structural_annotation	UHGV-0088638_56	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0088638_57	phrog_16490	55.0	0.000000000000002	N/A	unknown function
PHROG	UHGV-0088638_58	phrog_22984	54.4	0.0000000000000019	N/A	unknown function
eggNOG-mapper	UHGV-0088638_61	1384065.JAGS01000001_gene3265	47.8	0.00000693	sequence-specific DNA binding	N/A
COG	UHGV-0088638_61	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0088638_61	PF13560,NF040522	N/A	N/A	N/A	N/A
PHROG	UHGV-0088638_64	phrog_15303	84.1	1.3e-24	N/A	unknown function
PHROG	UHGV-0088638_65	phrog_1863	74.3	9.4e-22	N/A	unknown function
eggNOG-mapper	UHGV-0088638_65	718252.FP2_04900	142.0	2.99878e-43	N/A	N/A
KOfam	UHGV-0088638_66	K07273	153.7	1.4013e-45	acm; lysozyme	N/A
PHROG	UHGV-0088638_66	phrog_291	110.3	2.1e-32	endolysin	lysis
UniRef90	UHGV-0088638_66	UniRef90_A0A564U0D3	399.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0088638_66	718252.FP2_04890	241.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0088638_66	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0088638_66	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0088638_66	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0088638	Yes	41,553	52	100	1
UHGV-0367933	No	41,553	52	100	1
UHGV-1350698	No	41,553	52	100	1