vOTU vOTU-054449

vOTU: vOTU-054449

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-054449
Number of genomes	8
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-02909 → vGENUS-03868 → vSUBGEN-03549 → vOTU-054449
Host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-74 → Limiplasma → Limiplasma sp900548145
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1353999
Biosample ID	N/A
Genome length (bp)	42,408 bps
CheckV completeness	100.00% (Complete)
CDS count	58
CDS density	93.53%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-74 → Limiplasma → Limiplasma sp900548145	Total connections	85	Host agreement	88.24
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia	Total connections	6	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1353999_3	138119.DSY0542	57.0	0.00000618	Fibronectin type 3 domain	N/A
Pfam	UHGV-1353999_3	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
COG	UHGV-1353999_3	COG2247	N/A	N/A	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	N/A
structural_annotation	UHGV-1353999_3	PF21722,PF13895,MF_04116,NF033814	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1353999_4	394503.Ccel_0828	48.5	0.00000387	N/A	N/A
PHROG	UHGV-1353999_5	phrog_918	123.7	4.9e-37	N/A	unknown function
UniRef90	UHGV-1353999_5	UniRef90_UPI0008DFA801	139.0	1.24001e-41	N/A	N/A
eggNOG-mapper	UHGV-1353999_5	357809.Cphy_2966	117.0	2.33e-33	N/A	N/A
Pfam	UHGV-1353999_5	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-1353999_5	PF19791	N/A	N/A	N/A	N/A
KOfam	UHGV-1353999_6	K18454	42.2	0.0000000000073	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	N/A
PHROG	UHGV-1353999_6	phrog_30034	135.2	5.6e-40	N/A	unknown function
UniRef90	UHGV-1353999_6	UniRef90_R5QX84	160.0	0	Carbohydrate binding domain protein	N/A
eggNOG-mapper	UHGV-1353999_6	411460.RUMTOR_02099	158.0	0	N/A	N/A
Pfam	UHGV-1353999_6	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-1353999_6	PF14600	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1353999_8	1519439.JPJG01000060_gene1892	56.2	0.00000853	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-1353999_8	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
KOfam	UHGV-1353999_10	K21471	49.6	0.000000000000085	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
PHROG	UHGV-1353999_10	phrog_329	43.8	0.0000000000018	minor tail protein	tail
UniRef90	UHGV-1353999_10	UniRef90_A0A7C6FNM5	121.0	9.55e-30	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-1353999_10	106370.Francci3_0041	60.1	0.0000000896	PFAM NLP P60 protein	N/A
Pfam	UHGV-1353999_10	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-1353999_10	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-1353999_10	PF00877,PF14627,NF033742,COG0791,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-1353999_11	phrog_4105	100.2	1.3e-29	N/A	unknown function
UniRef90	UHGV-1353999_11	UniRef90_A0A8D9UHA9	127.0	2.2e-36	Holin protein	N/A
eggNOG-mapper	UHGV-1353999_11	742733.HMPREF9469_05011	148.0	2.8026e-45	N/A	N/A
eggNOG-mapper	UHGV-1353999_12	411470.RUMGNA_00254	75.9	7.98e-17	N/A	N/A
UniRef90	UHGV-1353999_13	UniRef90_A0A843IZ65	65.5	0.00000000000125	Sigma70_r4 domain-containing protein	N/A
Pfam	UHGV-1353999_13	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-1353999_13	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-1353999_13	PF08281,MF_00245,NF001070,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1353999_14	phrog_3754	101.1	1e-29	N/A	unknown function
eggNOG-mapper	UHGV-1353999_14	476272.RUMHYD_01764	174.0	0	N/A	N/A
PHROG	UHGV-1353999_15	phrog_21718	114.8	5.6e-34	N/A	unknown function
eggNOG-mapper	UHGV-1353999_15	397290.C810_05210	97.1	2.07e-23	N/A	N/A
PHROG	UHGV-1353999_16	phrog_22984	67.3	2e-19	N/A	unknown function
PHROG	UHGV-1353999_17	phrog_16490	151.5	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-1353999_17	476272.RUMHYD_01770	127.0	3.23e-33	N/A	N/A
PHROG	UHGV-1353999_18	phrog_20016	207.2	0	N/A	unknown function
UniRef90	UHGV-1353999_18	UniRef90_A0A285PT46	173.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1353999_18	397290.C810_05214	181.0	0	N/A	N/A
structural_annotation	UHGV-1353999_18	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1353999_19	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-1353999_20	K14059	180.6	0	int; integrase	N/A
PHROG	UHGV-1353999_20	phrog_1	170.9	0	integrase	integration and excision
UniRef90	UHGV-1353999_20	UniRef90_A0A1Q6PWD2	313.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1353999_20	428125.CLOLEP_02743	111.0	2.63e-24	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1353999_20	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-1353999_20	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1353999_20	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1353999_20	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
Pfam	UHGV-1353999_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1353999_21	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1353999_21	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1353999_24	K22300	44.3	0.0000000000034	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1353999_24	phrog_4	44.6	0.0000000000033	transcriptional repressor	transcription regulation
UniRef90	UHGV-1353999_24	UniRef90_UPI001C01C52A	83.6	2.24e-18	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1353999_24	264731.PRU_0541	55.1	0.0000001	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-1353999_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1353999_24	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1353999_24	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1353999_27	1034347.CAHJ01000051_gene30	52.0	0.0000000757	N/A	N/A
Pfam	UHGV-1353999_28	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-1353999_28	PF12728,NF033787,COG3311	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1353999_31	PF03368,TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1353999_32	phrog_874	175.4	0	N/A	unknown function
UniRef90	UHGV-1353999_32	UniRef90_A0A4P6LRJ9	171.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1353999_32	411468.CLOSCI_00298	162.0	0	N/A	N/A
structural_annotation	UHGV-1353999_32	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1353999_34	TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1353999_35	phrog_757	252.0	0	DNA methyltransferase	other
UniRef90	UHGV-1353999_35	UniRef90_UPI00189D46F4	251.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1353999_35	1235790.C805_00032	234.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1353999_35	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1353999_35	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1353999_36	phrog_7704	42.8	0.0000000000073	N/A	unknown function
Pfam	UHGV-1353999_36	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-1353999_37	phrog_24518	49.5	0.000000000000064	N/A	unknown function
eggNOG-mapper	UHGV-1353999_37	1519439.JPJG01000077_gene922	56.6	0.000000363	N/A	N/A
PHROG	UHGV-1353999_38	phrog_824	143.4	5.80138e-43	N/A	unknown function
UniRef90	UHGV-1353999_38	UniRef90_A0A645FWL0	173.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1353999_38	1291050.JAGE01000001_gene480	133.0	3.4e-38	VRR_NUC	N/A
Pfam	UHGV-1353999_38	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
PHROG	UHGV-1353999_40	phrog_3584	153.4	1.4013e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1353999_40	318464.IO99_13830	68.6	0.0000000000876	N/A	N/A
structural_annotation	UHGV-1353999_40	PF21578,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-1353999_42	K22300	63.0	5.6e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1353999_42	phrog_3	45.3	0.0000000000027	transcriptional repressor	transcription regulation
eggNOG-mapper	UHGV-1353999_42	1226322.HMPREF1545_02890	60.8	0.0000000015	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1353999_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-1353999_46	phrog_1206	42.7	0.0000000000021	terminase small subunit	head and packaging
KOfam	UHGV-1353999_47	K06909	148.0	8.40779e-44	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1353999_47	phrog_2	130.7	1.7e-38	terminase large subunit	head and packaging
UniRef90	UHGV-1353999_47	UniRef90_A0A3C0NMI6	559.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-1353999_47	1410650.JHWL01000003_gene2834	548.0	0	N/A	N/A
Pfam	UHGV-1353999_47	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1353999_47	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1353999_47	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1353999_48	phrog_156	334.7	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1353999_48	748224.HMPREF9436_01396	572.0	0	N/A	N/A
structural_annotation	UHGV-1353999_48	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1353999_49	NF011130,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1353999_50	phrog_13908	245.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1353999_50	1410650.JHWL01000003_gene2831	114.0	6.24e-27	N/A	N/A
PHROG	UHGV-1353999_51	phrog_1357	196.9	0	major head protein	head and packaging
UniRef90	UHGV-1353999_51	UniRef90_A0A8D9UH64	338.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1353999_51	1449126.JQKL01000003_gene1695	306.0	0	N/A	N/A
NCBIFam	UHGV-1353999_51	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1353999_51	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1353999_52	phrog_15239	44.1	0.0000000000026	N/A	unknown function
PHROG	UHGV-1353999_53	phrog_12105	100.8	9.9e-30	N/A	unknown function
eggNOG-mapper	UHGV-1353999_53	1519439.JPJG01000060_gene1891	63.2	0.0000000000454	N/A	N/A
PHROG	UHGV-1353999_54	phrog_511	192.9	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1353999_54	657322.FPR_02360	310.0	0	N/A	N/A
structural_annotation	UHGV-1353999_54	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1353999_55	411459.RUMOBE_00913	60.1	0.000000179	N/A	N/A
eggNOG-mapper	UHGV-1353999_56	748224.HMPREF9436_02540	55.8	0.00000856	N/A	N/A
PHROG	UHGV-1353999_57	phrog_22978	504.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1353999_57	1321782.HMPREF1986_00356	362.0	0	N/A	N/A
Pfam	UHGV-1353999_57	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
Pfam	UHGV-1353999_57	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1353999	Yes	42,408	60	100	1
UHGV-1469520	No	42,355	60	100	1
UHGV-0146588	No	40,717	60	97	1
UHGV-1398428	No	37,907	60	90	1
UHGV-1404860	No	25,260	62	60	1
UHGV-1681349	No	12,801	60	30	1
UHGV-1556631	No	10,132	61	24	1
UHGV-1662079	No	10,081	60	24	1