vOTU vOTU-054717

vOTU: vOTU-054717

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-054717
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-01454 → vGENUS-01963 → vSUBGEN-10634 → vOTU-054717
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminiclostridium_E → Ruminiclostridium_E siraeum
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1357197
Biosample ID	SAMEA3646677
Genome length (bp)	42,102 bps
CheckV completeness	100.00% (Complete)
CDS count	48
CDS density	94.91%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminiclostridium_E → Ruminiclostridium_E siraeum	Total connections	805	Host agreement	94.66
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruminiclostridium_E → Ruminiclostridium_E siraeum	Total connections	14	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1357197_1	phrog_27197	137.6	9.80909e-45	N/A	unknown function
eggNOG-mapper	UHGV-1357197_1	394503.Ccel_3068	65.1	0.0000000000247	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1357197_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
PHROG	UHGV-1357197_3	phrog_2245	76.3	3.7e-22	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-1357197_3	UniRef90_A0A4U9RLZ8	57.4	0.0000000179	N/A	N/A
eggNOG-mapper	UHGV-1357197_3	1226322.HMPREF1545_00289	64.3	0.000000000068	N/A	N/A
KOfam	UHGV-1357197_6	K14440	54.9	1.2e-25	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-1357197_6	phrog_16	193.9	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357197_6	UniRef90_U2KY37	619.0	0	Helicase protein	N/A
eggNOG-mapper	UHGV-1357197_6	411473.RUMCAL_00274	619.0	0	DEAD-like helicases superfamily	N/A
Pfam	UHGV-1357197_6	PF00270	N/A	N/A	DEAD/DEAH box helicase	DEAD
Pfam	UHGV-1357197_6	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1357197_6	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1357197_6	PF18766,PF16203,MF_01821,TIGR04095,COG0553	N/A	N/A	N/A	N/A
KOfam	UHGV-1357197_7	K24451	125.0	5.8e-37	zim; modification methylase	N/A
PHROG	UHGV-1357197_7	phrog_67	108.1	4.8e-32	DNA methyltransferase	other
UniRef90	UHGV-1357197_7	UniRef90_A0A3R6Q0Y1	503.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1357197_7	411473.RUMCAL_00273	491.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-1357197_7	MTase_II_00139	98.3	1.5e-28	Type II methyltransferase	RM
Pfam	UHGV-1357197_7	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1357197_7	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1357197_7	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1357197_8	phrog_4652	108.8	3e-32	N/A	unknown function
eggNOG-mapper	UHGV-1357197_8	397290.C810_01459	208.0	0	N/A	N/A
structural_annotation	UHGV-1357197_8	TIGR02582,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-1357197_9	phrog_15946	47.4	0.00000000000033	N/A	unknown function
eggNOG-mapper	UHGV-1357197_9	1041147.AUFB01000014_gene330	51.2	0.00000792	N/A	N/A
PHROG	UHGV-1357197_10	phrog_434	313.7	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357197_10	UniRef90_A0A855A258	268.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1357197_10	428125.CLOLEP_01823	268.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1357197_10	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1357197_10	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1357197_10	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1357197_10	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-1357197_11	K07455	192.9	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1357197_11	phrog_148	203.4	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357197_11	UniRef90_A0A3N4Q182	259.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-1357197_11	857293.CAAU_0781	245.0	0	RecT family	N/A
Pfam	UHGV-1357197_11	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1357197_11	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1357197_11	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1357197_11	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1357197_12	K01160	53.4	0.0000000000000069	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1357197_12	phrog_34	62.7	6.8e-18	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357197_12	UniRef90_A0A498CNH4	152.0	1.4013e-45	RusA family crossover junction endodeoxyribonuclease	N/A
Pfam	UHGV-1357197_12	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
structural_annotation	UHGV-1357197_12	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1357197_13	K03111	109.7	4.2e-32	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1357197_13	phrog_44	120.3	1.7e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357197_13	UniRef90_A0A358WCL3	151.0	4.62428e-44	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1357197_13	246199.CUS_6065	123.0	2.2e-33	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1357197_13	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1357197_13	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1357197_13	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1357197_13	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1357197_13	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1357197_14	phrog_2514	99.1	4e-29	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357197_14	UniRef90_A0A318KSV9	102.0	8.82e-23	DnaD/phage-associated family protein	N/A
eggNOG-mapper	UHGV-1357197_14	397291.C804_01603	104.0	1.76e-24	DnaD domain protein	N/A
Pfam	UHGV-1357197_14	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-1357197_14	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1357197_14	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-1357197_15	K02315	205.0	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1357197_15	phrog_50	193.9	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357197_15	UniRef90_A0A6P1YAH9	271.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1357197_15	293826.Amet_2601	220.0	0	DNA replication protein	N/A
Pfam	UHGV-1357197_15	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1357197_15	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1357197_15	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1357197_18	phrog_6721	260.6	0	N/A	unknown function
eggNOG-mapper	UHGV-1357197_18	411473.RUMCAL_00916	244.0	0	N/A	N/A
structural_annotation	UHGV-1357197_18	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-1357197_19	phrog_236	95.3	9.8e-28	nucleotide kinase	other
UniRef90	UHGV-1357197_19	UniRef90_UPI00092CC92E	63.9	0.000000000161	N/A	N/A
eggNOG-mapper	UHGV-1357197_19	546273.VEIDISOL_00707	78.6	1.97e-16	N/A	N/A
Pfam	UHGV-1357197_19	PF11753	N/A	N/A	N/A	DUF3310
PHROG	UHGV-1357197_21	phrog_1863	77.1	1.1e-23	N/A	unknown function
UniRef90	UHGV-1357197_21	UniRef90_UPI001F223E8B	89.0	1.44e-21	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-1357197_21	1226322.HMPREF1545_04027	75.5	4.99e-17	N/A	N/A
eggNOG-mapper	UHGV-1357197_22	411470.RUMGNA_00254	83.2	5.58e-20	N/A	N/A
KOfam	UHGV-1357197_23	K07273	144.1	1.19951e-42	acm; lysozyme	N/A
PHROG	UHGV-1357197_23	phrog_291	131.2	8.9e-39	endolysin	lysis
UniRef90	UHGV-1357197_23	UniRef90_A0A358WDD4	412.0	0	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-1357197_23	596315.HMPREF0634_0233	125.0	3.51e-29	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1357197_23	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1357197_23	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1357197_23	PF01183,PF11623,COG3757,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-1357197_24	phrog_6160	75.6	3.9e-22	N/A	unknown function
KOfam	UHGV-1357197_25	K22299	48.8	0.00000000000012	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
eggNOG-mapper	UHGV-1357197_25	1292035.H476_1315	55.5	0.000000151	Transcriptional	N/A
Pfam	UHGV-1357197_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1357197_25	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-1357197_29	phrog_309	164.2	0	terminase small subunit	head and packaging
UniRef90	UHGV-1357197_29	UniRef90_A0A318KK55	151.0	3.08286e-44	Homeodomain-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1357197_29	742733.HMPREF9469_01828	144.0	3.75968e-42	transposase activity	N/A
COG	UHGV-1357197_29	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-1357197_29	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-1357197_30	K06909	91.7	8.4e-27	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1357197_30	phrog_979	204.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-1357197_30	UniRef90_D4JR40	700.0	0	Terminase-like family	N/A
eggNOG-mapper	UHGV-1357197_30	748224.HMPREF9436_02548	679.0	0	Terminase-like family	N/A
Pfam	UHGV-1357197_30	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1357197_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1357197_30	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1357197_31	phrog_511	175.7	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1357197_31	718252.FP2_29250	188.0	0	N/A	N/A
structural_annotation	UHGV-1357197_31	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-1357197_32	phrog_25468	189.3	0	N/A	unknown function
UniRef90	UHGV-1357197_32	UniRef90_R6S1X0	404.0	0	Hep_Hag	N/A
eggNOG-mapper	UHGV-1357197_32	1122137.AQXF01000002_gene217	68.6	0.00000000201	Membrane	N/A
Pfam	UHGV-1357197_32	PF12789	N/A	N/A	Phage tail repeat like	PTR
COG	UHGV-1357197_32	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-1357197_34	phrog_156	371.1	0	portal protein	head and packaging
UniRef90	UHGV-1357197_34	UniRef90_A0A8D9UH10	577.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1357197_34	748224.HMPREF9436_02547	586.0	0	N/A	N/A
structural_annotation	UHGV-1357197_34	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-1357197_35	K07584	54.1	0.0000000000000029	N/A	N/A
PHROG	UHGV-1357197_35	phrog_4478	70.1	2.4e-20	peptidase	other
UniRef90	UHGV-1357197_35	UniRef90_A0A175A059	72.4	0.0000000000000253	Predicted ribosomal protein	N/A
Pfam	UHGV-1357197_35	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-1357197_35	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357197_35	NF011130,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1357197_36	phrog_13908	244.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1357197_36	1410650.JHWL01000003_gene2831	105.0	2.2e-23	N/A	N/A
PHROG	UHGV-1357197_37	phrog_1357	278.1	0	major head protein	head and packaging
UniRef90	UHGV-1357197_37	UniRef90_UPI0018F44E98	381.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1357197_37	748224.HMPREF9436_01399	371.0	0	N/A	N/A
NCBIFam	UHGV-1357197_37	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1357197_37	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1357197_38	phrog_15239	89.6	2.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-1357197_38	1449126.JQKL01000003_gene1694	54.7	0.000000037	N/A	N/A
PHROG	UHGV-1357197_39	phrog_12105	129.1	1.8e-38	N/A	unknown function
eggNOG-mapper	UHGV-1357197_39	1519439.JPJG01000060_gene1891	63.5	0.0000000000303	N/A	N/A
eggNOG-mapper	UHGV-1357197_40	1410650.JHWL01000003_gene2815	105.0	5.09e-22	N/A	N/A
KOfam	UHGV-1357197_41	K20478	84.1	2.5e-31	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-1357197_41	phrog_22978	624.1	0	N/A	unknown function
UniRef90	UHGV-1357197_41	UniRef90_A0A416JVP5	700.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-1357197_41	1410650.JHWL01000003_gene2814	655.0	0	N/A	N/A
Pfam	UHGV-1357197_41	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
Pfam	UHGV-1357197_41	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
KOfam	UHGV-1357197_42	K14059	240.0	0	int; integrase	N/A
PHROG	UHGV-1357197_42	phrog_1	213.1	0	integrase	integration and excision
UniRef90	UHGV-1357197_42	UniRef90_R6RJI6	431.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1357197_42	1232449.BAHV02000018_gene1556	161.0	6.5861e-43	Site-specific recombinase, phage integrase family	N/A
Pfam	UHGV-1357197_42	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1357197_42	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1357197_42	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1357197_42	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1357197_44	K22300	64.7	1.9e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1357197_44	phrog_3	60.2	8.8e-17	transcriptional repressor	transcription regulation
UniRef90	UHGV-1357197_44	UniRef90_A0A6N3H5I3	87.8	1.08e-19	HTH-type transcriptional regulator ImmR	N/A
eggNOG-mapper	UHGV-1357197_44	397288.C806_00131	77.4	2.32e-16	Transcriptional	N/A
Pfam	UHGV-1357197_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1357197_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-1357197_45	phrog_8	41.0	0.000000000035	transcriptional regulator	transcription regulation
UniRef90	UHGV-1357197_45	UniRef90_A0A844DP26	60.5	0.000000000146	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1357197_45	445972.ANACOL_00136	47.8	0.00000273	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1357197_45	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1357197_45	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357197_46	PF07878	N/A	N/A	N/A	N/A
PHROG	UHGV-1357197_48	phrog_4433	152.6	0	N/A	unknown function
eggNOG-mapper	UHGV-1357197_48	33035.JPJF01000122_gene2458	96.3	2.75e-21	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1357197_48	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1357197	Yes	42,102	44	100	1