vOTU vOTU-054754

vOTU: vOTU-054754

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-054754
Number of genomes	9
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00160 → vGENUS-00101 → vSUBGEN-09600 → vOTU-054754
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp000765235
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1357599
Biosample ID	SAMN02334051
Genome length (bp)	42,357 bps
CheckV completeness	100.00% (Complete)
CDS count	58
CDS density	92.08%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp000765235	Total connections	211	Host agreement	81.99
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp000765235	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1357599_2	phrog_7121	70.8	6.7e-21	tail fiber protein	tail
UniRef90	UHGV-1357599_2	UniRef90_R5ACE5	99.4	3.01e-19	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-1357599_2	1226322.HMPREF1545_00783	87.8	4.22e-16	Chaperone of endosialidase	N/A
Pfam	UHGV-1357599_2	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-1357599_2	PF07902,NF041249	N/A	N/A	N/A	N/A
PHROG	UHGV-1357599_4	phrog_511	189.5	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1357599_4	1226322.HMPREF1545_00785	442.0	0	N/A	N/A
structural_annotation	UHGV-1357599_4	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1357599_5	1203606.HMPREF1526_02741	106.0	3.83e-23	N/A	N/A
PHROG	UHGV-1357599_6	phrog_13543	73.6	5.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-1357599_6	693746.OBV_01590	521.0	0	N/A	N/A
Pfam	UHGV-1357599_6	PF18838	N/A	N/A	Large polyvalent protein associated domain 23	LPD23
PHROG	UHGV-1357599_7	phrog_937	44.9	0.0000000000021	hemolysin	other
eggNOG-mapper	UHGV-1357599_7	1519439.JPJG01000023_gene533	72.8	0.00000000000000191	N/A	N/A
PHROG	UHGV-1357599_9	phrog_13256	61.8	7.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-1357599_9	1226322.HMPREF1545_00132	72.4	7.05e-16	N/A	N/A
KOfam	UHGV-1357599_10	K17733	95.2	6.8e-28	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-1357599_10	phrog_6523	77.1	2.9e-22	endolysin	lysis
UniRef90	UHGV-1357599_10	UniRef90_R5RXG6	222.0	0	Serine-type D-Ala-D-Ala carboxypeptidase	N/A
eggNOG-mapper	UHGV-1357599_10	1519439.JPJG01000023_gene536	216.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-1357599_10	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-1357599_10	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-1357599_10	PF02557,MF_01924,NF000380,COG1876	N/A	N/A	N/A	N/A
UniRef90	UHGV-1357599_11	UniRef90_A0A8D9PDQ3	77.0	4.32e-17	ECF sigma factor	N/A
Pfam	UHGV-1357599_11	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
structural_annotation	UHGV-1357599_11	PF04545,MF_00674,NF009179,COG1342	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357599_14	PF18573,NF033147	N/A	N/A	N/A	N/A
KOfam	UHGV-1357599_17	K14059	134.4	1.5e-39	int; integrase	N/A
PHROG	UHGV-1357599_17	phrog_1	142.6	3.39955e-42	integrase	integration and excision
UniRef90	UHGV-1357599_17	UniRef90_UPI000F051A1D	393.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1357599_17	693746.OBV_43340	392.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1357599_17	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1357599_17	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1357599_17	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1357599_18	1280676.AUJO01000016_gene1107	52.4	0.00000386	Putative restriction endonuclease	N/A
Pfam	UHGV-1357599_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1357599_18	COG4636	N/A	N/A	Endonuclease, Uma2 family (restriction endonuclease fold)	N/A
structural_annotation	UHGV-1357599_18	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1357599_20	phrog_8	48.4	0.00000000000022	transcriptional regulator	transcription regulation
UniRef90	UHGV-1357599_20	UniRef90_A0A174FRM3	90.1	5.39e-20	Helix-turn-helix domain	N/A
eggNOG-mapper	UHGV-1357599_20	665950.HMPREF1025_02562	92.4	8.27e-22	TRANSCRIPTIONal	N/A
COG	UHGV-1357599_20	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
PHROG	UHGV-1357599_21	phrog_8	52.0	0.000000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-1357599_21	UniRef90_A0A412EXN2	76.6	4.51e-17	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1357599_21	665950.HMPREF1025_02561	65.1	0.000000000000249	sequence-specific DNA binding	N/A
Pfam	UHGV-1357599_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1357599_21	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1357599_21	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1357599_22	K07741	218.4	0	antB; anti-repressor protein	N/A
PHROG	UHGV-1357599_22	phrog_63	181.3	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1357599_22	UniRef90_UPI000466CBED	365.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-1357599_22	1232443.BAIA02000079_gene53	365.0	0	AntA/AntB antirepressor	N/A
Pfam	UHGV-1357599_22	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-1357599_22	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1357599_22	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1357599_22	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1357599_25	693746.OBV_43260	62.0	0.00000000000513	N/A	N/A
structural_annotation	UHGV-1357599_25	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1357599_29	phrog_434	287.3	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357599_29	UniRef90_U2SK35	417.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-1357599_29	1226322.HMPREF1545_00014	417.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1357599_29	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1357599_29	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1357599_29	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1357599_29	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-1357599_30	K07455	292.0	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1357599_30	phrog_148	276.0	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357599_30	UniRef90_U2SBP2	435.0	0	Recombination and repair protein RecT	N/A
eggNOG-mapper	UHGV-1357599_30	1226322.HMPREF1545_00015	435.0	0	RecT family	N/A
Pfam	UHGV-1357599_30	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1357599_30	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1357599_30	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1357599_30	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1357599_31	K03111	123.0	3.8e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1357599_31	phrog_44	117.1	1.7e-34	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357599_31	UniRef90_R5SNS5	146.0	1.81048e-42	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1357599_31	693746.OBV_12860	144.0	1.3004e-42	Single-strand binding protein family	N/A
Pfam	UHGV-1357599_31	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1357599_31	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1357599_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1357599_31	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1357599_31	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1357599_32	phrog_15768	94.4	1.9e-29	N/A	unknown function
UniRef90	UHGV-1357599_32	UniRef90_A0A8D9PDU3	182.0	0	N/A	N/A
eggNOG-mapper	UHGV-1357599_32	642492.Clole_0946	84.3	3.22e-17	DnaD domain protein	N/A
AcrCatalog	UHGV-1357599_32	cluster_38323	82.0	5.8e-21	NA	N/A
Pfam	UHGV-1357599_32	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1357599_32	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1357599_32	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1357599_33	K02315	181.2	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1357599_33	phrog_50	159.2	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357599_33	UniRef90_UPI00137A9A0F	285.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1357599_33	203119.Cthe_2467	260.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-1357599_33	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-1357599_33	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-1357599_33	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1357599_33	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1357599_36	phrog_190	115.2	4.8e-34	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357599_36	UniRef90_UPI001C0170D2	108.0	3.1e-27	N/A	N/A
eggNOG-mapper	UHGV-1357599_36	1226322.HMPREF1545_00295	125.0	1.58e-34	N/A	N/A
Pfam	UHGV-1357599_36	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1357599_36	PF06356	N/A	N/A	N/A	N/A
Pfam	UHGV-1357599_38	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1357599_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-1357599_39	phrog_424	62.7	6.6e-18	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1357599_39	UniRef90_A0A352DQ80	167.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-1357599_39	665956.HMPREF1032_00140	162.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-1357599_39	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1357599_39	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
UniRef90	UHGV-1357599_40	UniRef90_A0A098GES5	92.0	2.71e-22	Putative phage associated protein	N/A
structural_annotation	UHGV-1357599_40	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
UniRef90	UHGV-1357599_41	UniRef90_UPI0012AD39DD	60.8	0.0000000887	leucine-rich repeat protein	N/A
PHROG	UHGV-1357599_42	phrog_38832	56.6	2.5e-16	N/A	unknown function
eggNOG-mapper	UHGV-1357599_42	665956.HMPREF1032_00143	57.0	0.0000000928	N/A	N/A
PHROG	UHGV-1357599_43	phrog_22543	42.6	0.0000000000073	N/A	unknown function
UniRef90	UHGV-1357599_43	UniRef90_A0A8D9PDT5	73.9	0.00000000000000629	Hydrogenase/urease nickel incorporation protein	N/A
eggNOG-mapper	UHGV-1357599_45	445972.ANACOL_00168	48.1	0.00000151	N/A	N/A
PHROG	UHGV-1357599_46	phrog_872	149.0	0	N/A	unknown function
UniRef90	UHGV-1357599_46	UniRef90_A0A8J6M9F5	209.0	0	N/A	N/A
eggNOG-mapper	UHGV-1357599_46	1519439.JPJG01000060_gene1880	195.0	0	N/A	N/A
Pfam	UHGV-1357599_46	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-1357599_46	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-1357599_46	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-1357599_48	phrog_606	84.3	1.4e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1357599_48	UniRef90_UPI00195648BB	171.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1357599_48	397290.C810_05185	153.0	2.8026e-45	DNA-packaging protein gp3	N/A
Pfam	UHGV-1357599_48	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1357599_48	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1357599_49	K06909	102.3	5.8e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1357599_49	phrog_979	151.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1357599_49	UniRef90_A0A1Y4WJ48	700.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-1357599_49	748224.HMPREF9436_01395	561.0	0	Terminase-like family	N/A
Pfam	UHGV-1357599_49	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1357599_49	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1357599_49	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1357599_50	phrog_156	317.5	0	portal protein	head and packaging
UniRef90	UHGV-1357599_50	UniRef90_A0A8D9UH10	674.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1357599_50	748224.HMPREF9436_01396	475.0	0	N/A	N/A
structural_annotation	UHGV-1357599_50	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357599_51	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1357599_52	phrog_13908	257.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1357599_52	1410650.JHWL01000003_gene2831	98.6	1.1e-20	N/A	N/A
PHROG	UHGV-1357599_53	phrog_1357	254.9	0	major head protein	head and packaging
UniRef90	UHGV-1357599_53	UniRef90_A0A8D9UH64	501.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1357599_53	1449126.JQKL01000003_gene1695	456.0	0	N/A	N/A
Pfam	UHGV-1357599_53	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1357599_53	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1357599_53	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1357599_54	phrog_15239	75.0	7.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-1357599_54	1449126.JQKL01000003_gene1694	52.4	0.000000328	N/A	N/A
KOfam	UHGV-1357599_55	K16628	183.5	0	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-1357599_55	phrog_819	95.0	0	tail protein	tail
UniRef90	UHGV-1357599_55	UniRef90_UPI00068BE71D	382.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1357599_55	1519439.JPJG01000060_gene1892	382.0	0	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-1357599_55	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1357599_55	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-1357599_55	PF10651,NF033814	N/A	N/A	N/A	N/A
PHROG	UHGV-1357599_56	phrog_37900	49.0	0.0000000000000035	N/A	unknown function
UniRef90	UHGV-1357599_56	UniRef90_UPI00051B4A1C	308.0	0	N/A	N/A
eggNOG-mapper	UHGV-1357599_56	1519439.JPJG01000060_gene1894	308.0	0	N/A	N/A
Pfam	UHGV-1357599_56	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-1357599_56	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
PHROG	UHGV-1357599_57	phrog_27545	151.7	2.8026e-45	N/A	unknown function
UniRef90	UHGV-1357599_57	UniRef90_D1PRE7	155.0	2.66247e-44	Glycosyl hydrolase, family 18 family protein	N/A
eggNOG-mapper	UHGV-1357599_57	1519439.JPJG01000060_gene1895	363.0	0	N/A	N/A
Pfam	UHGV-1357599_57	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-1357599_57	PF16170	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1357599	Yes	42,357	56	100	1
UHGV-0133386	No	42,034	56	97	1
UHGV-0127497	No	40,424	56	94	1
UHGV-1433897	No	40,188	56	93	1
UHGV-0132318	No	34,333	56	80	1
UHGV-1395398	No	32,654	57	76	1
UHGV-1443787	No	32,291	56	75	1
UHGV-1719378	No	19,673	58	46	1
UHGV-1708919	No	10,552	57	25	1