vOTU vOTU-054763

vOTU: vOTU-054763

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-054763
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00213 → vGENUS-00391 → vSUBGEN-18514 → vOTU-054763
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1357728
Biosample ID	N/A
Genome length (bp)	41,598 bps
CheckV completeness	100.00% (Complete)
CDS count	61
CDS density	92.98%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	45	Host agreement	91.11
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83 → CAG-83 sp000435555	Total connections	13	Host agreement	92.31

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1357728_2	UniRef90_A0A8D9UHA6	267.0	0	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-1357728_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1357728_2	PF12844,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1357728_5	phrog_8	75.3	7.8e-22	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1357728_5	349123.Lreu23DRAFT_3080	56.6	0.0000000164	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1357728_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1357728_5	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-1357728_6	phrog_8	47.3	0.00000000000038	transcriptional regulator	transcription regulation
UniRef90	UHGV-1357728_6	UniRef90_UPI001D00CAB4	59.7	0.00000000078	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1357728_6	665950.HMPREF1025_02561	53.1	0.0000000449	sequence-specific DNA binding	N/A
Pfam	UHGV-1357728_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1357728_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-1357728_7	UniRef90_A0A2N9ZZK9	52.8	0.00000121	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1357728_7	1054460.SPPN_08995	52.8	0.000000202	transcriptional	N/A
Pfam	UHGV-1357728_7	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1357728_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-1357728_10	phrog_22529	49.1	0.000000000000063	N/A	unknown function
UniRef90	UHGV-1357728_10	UniRef90_A0A8D9UHA1	316.0	0	3D containing protein	N/A
eggNOG-mapper	UHGV-1357728_10	658088.HMPREF0987_02675	68.2	0.0000000000315	peptidase	N/A
Pfam	UHGV-1357728_10	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-1357728_10	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-1357728_10	COG3584	N/A	N/A	N/A	N/A
UniRef90	UHGV-1357728_12	UniRef90_A0A8D9UH91	312.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1357728_12	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-1357728_12	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-1357728_14	phrog_253	82.0	8.4e-24	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357728_14	UniRef90_A0A8D9PDS3	315.0	0	Resistance protein	N/A
eggNOG-mapper	UHGV-1357728_14	748224.HMPREF9436_03356	102.0	1.47e-25	Siphovirus Gp157	N/A
Pfam	UHGV-1357728_14	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1357728_14	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1357728_15	phrog_155	146.5	1.59748e-43	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357728_15	UniRef90_UPI001C126E67	198.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1357728_15	559189.B6SBX8_9CAUD	172.0	0	ERF superfamily	N/A
Pfam	UHGV-1357728_15	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1357728_15	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1357728_16	phrog_72	51.6	0.0000000000000055	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357728_16	UniRef90_A0A8D9PDS2	358.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-1357728_16	445972.ANACOL_01825	131.0	2.85e-36	N/A	N/A
structural_annotation	UHGV-1357728_16	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1357728_18	phrog_7566	94.9	4.8e-28	N/A	unknown function
UniRef90	UHGV-1357728_18	UniRef90_A0A8D9UHC0	188.0	0	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-1357728_18	693746.OBV_24070	124.0	1.34e-35	N/A	N/A
KOfam	UHGV-1357728_19	K03111	146.0	3.60134e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1357728_19	phrog_44	144.1	7.69313e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357728_19	UniRef90_G4L1H2	199.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1357728_19	693746.OBV_19910	199.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1357728_19	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1357728_19	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1357728_19	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1357728_19	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1357728_19	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1357728_21	phrog_15768	105.9	1.8e-33	N/A	unknown function
UniRef90	UHGV-1357728_21	UniRef90_A0A8D9PDU3	311.0	0	N/A	N/A
eggNOG-mapper	UHGV-1357728_21	203119.Cthe_2466	84.3	1.85e-16	N/A	N/A
Pfam	UHGV-1357728_21	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1357728_21	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-1357728_23	phrog_190	88.4	7e-26	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357728_23	UniRef90_A0A8D9PDD6	219.0	0	Endonuclease	N/A
eggNOG-mapper	UHGV-1357728_23	862517.HMPREF9225_1657	68.6	0.000000000000926	N/A	N/A
Pfam	UHGV-1357728_23	PF06356	N/A	N/A	N/A	DUF1064
PHROG	UHGV-1357728_24	phrog_111	146.7	1.09301e-43	DNA methyltransferase	other
UniRef90	UHGV-1357728_24	UniRef90_A0A1L5KS67	196.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
eggNOG-mapper	UHGV-1357728_24	445972.ANACOL_03344	180.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-1357728_24	oMTase_00015	165.3	0	orphan methyltransferase	RM
Pfam	UHGV-1357728_24	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-1357728_24	PF05869,TIGR01712,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-1357728_26	phrog_38832	61.6	1.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-1357728_26	665956.HMPREF1032_00143	58.9	0.0000000191	N/A	N/A
UniRef90	UHGV-1357728_29	UniRef90_A0A8D9PDT5	63.2	0.0000000000967	Hydrogenase/urease nickel incorporation protein	N/A
UniRef90	UHGV-1357728_31	UniRef90_A0A8D9PDK2	117.0	2.01e-32	Zinc-ribbon containing domain	N/A
PHROG	UHGV-1357728_33	phrog_18716	175.0	0	N/A	unknown function
UniRef90	UHGV-1357728_33	UniRef90_R6RP50	181.0	0	N/A	N/A
eggNOG-mapper	UHGV-1357728_33	665959.HMPREF1013_00856	127.0	1.6e-36	N/A	N/A
Pfam	UHGV-1357728_33	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-1357728_33	PF18909	N/A	N/A	N/A	N/A
KOfam	UHGV-1357728_35	K22299	47.4	0.00000000000044	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1357728_35	phrog_8	64.7	1.9e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1357728_35	UniRef90_A0A8D9PDC4	152.0	0	Repressor protein	N/A
eggNOG-mapper	UHGV-1357728_35	1226322.HMPREF1545_00039	79.0	1.69e-18	sequence-specific DNA binding	N/A
Pfam	UHGV-1357728_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1357728_35	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1357728_35	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1357728_36	UniRef90_A0A8D9PDT2	250.0	0	Brinker DNA-binding domain protein	N/A
eggNOG-mapper	UHGV-1357728_36	1226322.HMPREF1545_00042	138.0	2.4e-40	N/A	N/A
structural_annotation	UHGV-1357728_36	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-1357728_37	K06909	117.6	1.2e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1357728_37	phrog_979	193.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-1357728_37	UniRef90_A0A8D9PDR5	1016.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-1357728_37	1321782.HMPREF1986_00343	614.0	0	N/A	N/A
Pfam	UHGV-1357728_37	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1357728_37	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1357728_37	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1357728_38	phrog_156	327.2	0	portal protein	head and packaging
UniRef90	UHGV-1357728_38	UniRef90_A0A8D9UH10	1249.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1357728_38	748224.HMPREF9436_01396	538.0	0	N/A	N/A
structural_annotation	UHGV-1357728_38	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
UniRef90	UHGV-1357728_39	UniRef90_A0A8D9PDR6	194.0	0	YsxB-like protein	N/A
Pfam	UHGV-1357728_39	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-1357728_39	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1357728_40	phrog_13908	309.4	0	N/A	unknown function
UniRef90	UHGV-1357728_40	UniRef90_A0A844DRV7	119.0	9.87e-27	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-1357728_40	1410650.JHWL01000003_gene2831	122.0	1.42e-29	N/A	N/A
PHROG	UHGV-1357728_41	phrog_1357	260.5	0	major head protein	head and packaging
UniRef90	UHGV-1357728_41	UniRef90_A0A8D9UH64	803.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1357728_41	1449126.JQKL01000003_gene1695	453.0	0	N/A	N/A
Pfam	UHGV-1357728_41	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1357728_41	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1357728_41	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1357728_42	phrog_15239	87.3	1.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-1357728_42	1449126.JQKL01000003_gene1694	51.2	0.00000256	N/A	N/A
KOfam	UHGV-1357728_43	K16628	87.1	5.9e-26	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-1357728_43	phrog_5073	108.4	8e-32	tail fiber protein	tail
UniRef90	UHGV-1357728_43	UniRef90_A0A8D9PDI4	769.0	0	Collagen I alpha 1	N/A
eggNOG-mapper	UHGV-1357728_43	1203606.HMPREF1526_02029	60.8	0.000000984	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-1357728_43	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1357728_43	COG1409	N/A	N/A	3',5'-cyclic AMP phosphodiesterase CpdA	N/A
structural_annotation	UHGV-1357728_43	PF10651,NF033814,COG3470	N/A	N/A	N/A	N/A
UniRef90	UHGV-1357728_44	UniRef90_A0A8D9PDI7	801.0	0	mRNA splicing protein	N/A
structural_annotation	UHGV-1357728_44	PF14583,MF_01195,TIGR03547,COG3055	N/A	N/A	N/A	N/A
PHROG	UHGV-1357728_47	phrog_4105	103.7	1e-30	N/A	unknown function
UniRef90	UHGV-1357728_47	UniRef90_A0A8D9UHA9	206.0	0	Holin protein	N/A
eggNOG-mapper	UHGV-1357728_47	411460.RUMTOR_01326	140.0	3.32949e-42	N/A	N/A
PHROG	UHGV-1357728_48	phrog_881	92.0	2.9e-27	holin	lysis
UniRef90	UHGV-1357728_48	UniRef90_A0A8D9PDR9	100.0	1.63e-26	Holin	N/A
eggNOG-mapper	UHGV-1357728_48	742740.HMPREF9474_02251	85.5	3.24e-21	Putative phage holin Dp-1	N/A
Pfam	UHGV-1357728_48	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1357728_48	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-1357728_49	phrog_435	53.4	0.0000000000000049	endolysin	lysis
UniRef90	UHGV-1357728_49	UniRef90_A0A8D9PDX2	364.0	0	MurNAc-LAA protein	N/A
eggNOG-mapper	UHGV-1357728_49	1226322.HMPREF1545_01953	81.3	0.00000000000000149	N-acetylmuramoyl-L-alanine amidase	N/A
COG	UHGV-1357728_49	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1357728_49	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-1357728_50	phrog_12105	88.2	1.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-1357728_50	1519439.JPJG01000060_gene1891	61.6	0.000000000144	N/A	N/A
PHROG	UHGV-1357728_51	phrog_511	223.6	0	internal virion protein	head and packaging
UniRef90	UHGV-1357728_51	UniRef90_A0A8D9UH72	958.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-1357728_51	1226322.HMPREF1545_00785	315.0	0	N/A	N/A
structural_annotation	UHGV-1357728_51	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
UniRef90	UHGV-1357728_52	UniRef90_A0A8D9UGT1	159.0	0	Sigma C capsid protein	N/A
eggNOG-mapper	UHGV-1357728_53	1410650.JHWL01000003_gene2815	65.5	0.00000000457	N/A	N/A
PHROG	UHGV-1357728_54	phrog_22978	830.3	0	N/A	unknown function
UniRef90	UHGV-1357728_54	UniRef90_R5G452	464.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-1357728_54	1410650.JHWL01000003_gene2814	285.0	0	N/A	N/A
Pfam	UHGV-1357728_54	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
PHROG	UHGV-1357728_55	phrog_3754	94.2	1.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-1357728_55	476272.RUMHYD_01764	162.0	0	N/A	N/A
PHROG	UHGV-1357728_56	phrog_21718	102.7	3.2e-30	N/A	unknown function
eggNOG-mapper	UHGV-1357728_56	397290.C810_05210	70.9	0.000000000000232	N/A	N/A
PHROG	UHGV-1357728_57	phrog_22984	77.0	2e-22	N/A	unknown function
PHROG	UHGV-1357728_58	phrog_16490	124.6	6.3e-37	N/A	unknown function
eggNOG-mapper	UHGV-1357728_58	1408437.JNJN01000043_gene803	172.0	0	N/A	N/A
PHROG	UHGV-1357728_59	phrog_20016	185.4	0	N/A	unknown function
UniRef90	UHGV-1357728_59	UniRef90_A0A285PT46	191.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1357728_59	1226322.HMPREF1545_00077	169.0	0	N/A	N/A
structural_annotation	UHGV-1357728_59	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357728_60	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-1357728_61	K14059	164.7	0	int; integrase	N/A
PHROG	UHGV-1357728_61	phrog_1	151.9	5.60519e-45	integrase	integration and excision
UniRef90	UHGV-1357728_61	UniRef90_A0A174HFN7	322.0	0	Site-specific tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-1357728_61	742738.HMPREF9460_01344	207.0	0	Phage integrase family	N/A
Pfam	UHGV-1357728_61	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1357728_61	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1357728_61	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1357728	Yes	41,598	58	100	1
UHGV-1431068	No	41,679	58	98	1
UHGV-0035257	No	32,161	58	75	1