vOTU vOTU-054914

vOTU: vOTU-054914

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-054914
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00095 → vGENUS-20690 → vSUBGEN-40929 → vOTU-054914
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Clostridium_Q → Clostridium_Q symbiosum
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1359638
Biosample ID	SAMEA4431875
Genome length (bp)	41,944 bps
CheckV completeness	100.00% (Complete)
CDS count	68
CDS density	90.45%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Clostridium_Q → Clostridium_Q symbiosum	Total connections	228	Host agreement	97.81
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Clostridium_Q → Clostridium_Q symbiosum	Total connections	7	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1359638_1	K14059	182.5	0	int; integrase	N/A
PHROG	UHGV-1359638_1	phrog_1	162.3	0	integrase	integration and excision
UniRef90	UHGV-1359638_1	UniRef90_A0A1C6K4B6	729.0	0	Tyrosine recombinase XerD	N/A
eggNOG-mapper	UHGV-1359638_1	742740.HMPREF9474_03478	723.0	0	DNA integration	N/A
Pfam	UHGV-1359638_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1359638_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1359638_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1359638_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1359638_2	UniRef90_A0A1C6K4A6	422.0	0	N/A	N/A
eggNOG-mapper	UHGV-1359638_2	457421.CBFG_03484	87.8	1.18e-17	repeat protein	N/A
Pfam	UHGV-1359638_2	PF19085	N/A	N/A	Choline-binding repeat	Choline_bind_2
Pfam	UHGV-1359638_2	PF16729	N/A	N/A	N/A	DUF5067
COG	UHGV-1359638_2	COG5279	N/A	N/A	Cytokinesis protein 3, contains TGc (transglutaminase/protease-like) domain	N/A
structural_annotation	UHGV-1359638_2	PF11611,PF19127	N/A	N/A	N/A	N/A
UniRef90	UHGV-1359638_3	UniRef90_A0A3A6GQZ1	114.0	5.87e-31	Zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-1359638_3	1499689.CCNN01000007_gene1692	50.1	0.00000317	TM2 domain	N/A
COG	UHGV-1359638_3	COG2314	N/A	N/A	N/A	N/A
PHROG	UHGV-1359638_4	phrog_7823	104.7	6.9e-31	N/A	unknown function
eggNOG-mapper	UHGV-1359638_4	33035.JPJF01000158_gene3562	106.0	1.6e-28	N/A	N/A
KOfam	UHGV-1359638_5	K01356	74.2	2.5e-21	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1359638_5	phrog_4	127.6	1.2e-37	transcriptional repressor	transcription regulation
UniRef90	UHGV-1359638_5	UniRef90_A0A1C6HIY1	340.0	0	Transcriptional repressor DicA	N/A
eggNOG-mapper	UHGV-1359638_5	1235792.C808_02455	247.0	0	Peptidase S24-like	N/A
PADLOC	UHGV-1359638_5	retron_type_VI_hth_cluster2_1	41.6	0.000000000021	N/A	Retron
Pfam	UHGV-1359638_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1359638_5	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1359638_5	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-1359638_5	PF00717,PF01381,MF_00015,NF041951,NF007621,COG2932	N/A	N/A	N/A	N/A
UniRef90	UHGV-1359638_6	UniRef90_UPI001C029153	110.0	3.2e-30	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1359638_6	742765.HMPREF9457_02095	58.5	0.000000000184	Helix-turn-helix XRE-family like proteins	N/A
structural_annotation	UHGV-1359638_6	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359638_9	PF17452	N/A	N/A	N/A	N/A
PHROG	UHGV-1359638_12	phrog_36464	84.1	1.5e-24	N/A	unknown function
UniRef90	UHGV-1359638_12	UniRef90_R6QN85	81.6	8.31e-19	50S ribosomal protein L11 domain protein	N/A
eggNOG-mapper	UHGV-1359638_12	742740.HMPREF9474_03484	156.0	0	N/A	N/A
structural_annotation	UHGV-1359638_12	PF09035	N/A	N/A	N/A	N/A
PHROG	UHGV-1359638_16	phrog_30234	51.7	4.8e-16	N/A	unknown function
eggNOG-mapper	UHGV-1359638_16	33035.JPJF01000071_gene4461	86.7	3.76e-22	N/A	N/A
PHROG	UHGV-1359638_17	phrog_659	40.1	0.00000000002	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1359638_17	UniRef90_UPI00118460F7	450.0	0	N/A	N/A
eggNOG-mapper	UHGV-1359638_17	33035.JPJF01000135_gene5082	204.0	0	N/A	N/A
Pfam	UHGV-1359638_17	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-1359638_17	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-1359638_18	phrog_434	56.0	6.6e-16	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1359638_18	1238184.CM001792_gene2549	64.3	0.000000000505	N/A	N/A
structural_annotation	UHGV-1359638_18	PF09588,TIGR04328,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-1359638_19	phrog_72	66.9	2.8e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1359638_19	411468.CLOSCI_00314	117.0	7.35e-31	N/A	N/A
structural_annotation	UHGV-1359638_19	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1359638_20	phrog_7566	82.6	3.5e-24	N/A	unknown function
UniRef90	UHGV-1359638_20	UniRef90_A0A417GG52	171.0	0	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-1359638_20	1304866.K413DRAFT_1198	60.5	0.00000000013	N/A	N/A
PHROG	UHGV-1359638_21	phrog_2113	62.9	3.9e-18	N/A	unknown function
structural_annotation	UHGV-1359638_21	PF01978,TIGR01610,COG3388	N/A	N/A	N/A	N/A
PHROG	UHGV-1359638_22	phrog_2514	157.5	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1359638_22	UniRef90_S0A2V1	133.0	7.95e-34	DNA replication protein	N/A
eggNOG-mapper	UHGV-1359638_22	742733.HMPREF9469_01845	144.0	7.51e-39	N/A	N/A
structural_annotation	UHGV-1359638_22	PF10771,MF_01177,TIGR01714,COG0640	N/A	N/A	N/A	N/A
UniRef90	UHGV-1359638_24	UniRef90_A0A4P6M5S7	57.4	0.0000000688	LexA repressor	N/A
structural_annotation	UHGV-1359638_24	PF01726,MF_00732,NF008273,COG1321	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-1359638_28	cluster_222026	101.0	1.15e-32	NA	N/A
PHROG	UHGV-1359638_29	phrog_9820	42.3	0.0000000000096	N/A	unknown function
UniRef90	UHGV-1359638_29	UniRef90_A0A1B8VX28	68.9	0.00000000000129	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1359638_29	97139.C824_00748	153.0	0	N/A	N/A
structural_annotation	UHGV-1359638_29	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-1359638_30	phrog_17260	189.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1359638_30	1114964.L485_22640	176.0	0	N/A	N/A
AcrCatalog	UHGV-1359638_30	cluster_11231	227.0	0	NA	N/A
KOfam	UHGV-1359638_31	K21527	41.6	0.000000000014	mom; adenine modification enzyme [EC:2.3.1.-]	N/A
PHROG	UHGV-1359638_31	phrog_1384	96.7	2.1e-28	Mom-like DNA modification protein	other
UniRef90	UHGV-1359638_31	UniRef90_A0A0K2CZB3	172.0	0	Acetyltransferase	N/A
eggNOG-mapper	UHGV-1359638_31	1121468.AUBR01000007_gene285	91.3	3.19e-20	COG NOG12663 non supervised orthologous group	N/A
AcrCatalog	UHGV-1359638_34	cluster_47354	106.0	1.52e-33	NA	N/A
PHROG	UHGV-1359638_35	phrog_36	79.8	4e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-1359638_35	UniRef90_UPI001D089637	277.0	0	N/A	N/A
eggNOG-mapper	UHGV-1359638_35	33035.JPJF01000139_gene3002	183.0	0	N/A	N/A
Pfam	UHGV-1359638_35	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-1359638_35	PF04545	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359638_36	PF04381,MF_00194,NF001460,COG2974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1359638_37	UniRef90_UPI0015704FD2	318.0	0	N/A	N/A
structural_annotation	UHGV-1359638_37	PF19363,PF04471,COG1787,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-1359638_38	phrog_309	197.2	0	terminase small subunit	head and packaging
UniRef90	UHGV-1359638_38	UniRef90_UPI001AA1016E	286.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1359638_38	742733.HMPREF9469_01828	216.0	0	transposase activity	N/A
Pfam	UHGV-1359638_38	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
COG	UHGV-1359638_38	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-1359638_38	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-1359638_39	K06909	84.1	2e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1359638_39	phrog_2	66.0	8.1e-19	terminase large subunit	head and packaging
UniRef90	UHGV-1359638_39	UniRef90_UPI00192D4B43	857.0	0	terminase	N/A
eggNOG-mapper	UHGV-1359638_39	742740.HMPREF9474_03500	839.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-1359638_39	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1359638_39	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1359638_41	phrog_28292	134.2	2.69999e-40	N/A	unknown function
UniRef90	UHGV-1359638_41	UniRef90_A0A8B3BZ84	98.2	2.27e-25	3-hydroxyacyl-CoA dehydrogenase	N/A
eggNOG-mapper	UHGV-1359638_41	500632.CLONEX_01438	82.8	4.74e-20	N/A	N/A
PHROG	UHGV-1359638_42	phrog_533	288.7	0	portal protein	head and packaging
UniRef90	UHGV-1359638_42	UniRef90_E7GRF6	942.0	0	Phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1359638_42	742740.HMPREF9474_03501	942.0	0	N/A	N/A
structural_annotation	UHGV-1359638_42	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1359638_43	phrog_25639	109.5	1e-32	N/A	unknown function
eggNOG-mapper	UHGV-1359638_43	742740.HMPREF9474_03502	127.0	1.96e-37	N/A	N/A
PHROG	UHGV-1359638_44	phrog_581	257.5	0	minor head protein	head and packaging
UniRef90	UHGV-1359638_44	UniRef90_UPI00157055D2	1042.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1359638_44	742740.HMPREF9474_03503	659.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1359638_44	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-1359638_44	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
COG	UHGV-1359638_44	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359638_44	PF06152,PF03496,MF_04139,NF040688	N/A	N/A	N/A	N/A
PHROG	UHGV-1359638_45	phrog_2303	142.9	2.29953e-42	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1359638_45	742740.HMPREF9474_03504	290.0	0	N/A	N/A
PHROG	UHGV-1359638_46	phrog_422	353.1	0	major head protein	head and packaging
UniRef90	UHGV-1359638_46	UniRef90_E7GRG0	558.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1359638_46	742740.HMPREF9474_03505	558.0	0	N/A	N/A
structural_annotation	UHGV-1359638_46	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1359638_47	phrog_1378	76.5	2e-22	N/A	unknown function
eggNOG-mapper	UHGV-1359638_47	742740.HMPREF9474_03506	123.0	2.06e-35	N/A	N/A
PHROG	UHGV-1359638_48	phrog_541	90.7	1.3e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-1359638_48	742740.HMPREF9474_03507	218.0	0	N/A	N/A
PHROG	UHGV-1359638_49	phrog_8710	137.4	3.89995e-41	N/A	unknown function
eggNOG-mapper	UHGV-1359638_49	742740.HMPREF9474_03508	190.0	0	N/A	N/A
structural_annotation	UHGV-1359638_49	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1359638_50	phrog_556	62.1	6.5e-18	minor head protein	head and packaging
eggNOG-mapper	UHGV-1359638_50	742740.HMPREF9474_03509	214.0	0	N/A	N/A
PHROG	UHGV-1359638_51	phrog_2595	88.7	5.6e-26	head-tail connector protein	connector
UniRef90	UHGV-1359638_51	UniRef90_UPI001D068DAC	166.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1359638_51	483218.BACPEC_01150	177.0	0	N/A	N/A
Pfam	UHGV-1359638_51	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-1359638_51	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1359638_52	phrog_820	134.5	4.9e-40	major tail protein	tail
eggNOG-mapper	UHGV-1359638_52	483218.BACPEC_01149	231.0	0	domain, Protein	N/A
COG	UHGV-1359638_52	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359638_52	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1359638_53	phrog_8300	80.4	1.9e-23	N/A	unknown function
eggNOG-mapper	UHGV-1359638_53	742740.HMPREF9474_03512	147.0	5.60519e-45	N/A	N/A
structural_annotation	UHGV-1359638_53	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1359638_54	phrog_8355	103.8	5.7e-31	N/A	unknown function
UniRef90	UHGV-1359638_54	UniRef90_A0A1I0K8W5	182.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1359638_54	742740.HMPREF9474_03513	162.0	0	N/A	N/A
Pfam	UHGV-1359638_54	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1359638_54	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1359638_55	phrog_1535	388.2	0	tail length tape measure protein	tail
UniRef90	UHGV-1359638_55	UniRef90_A0A174WQ97	1024.0	0	Phage-like protein	N/A
eggNOG-mapper	UHGV-1359638_55	742740.HMPREF9474_03514	1223.0	0	tape measure	N/A
COG	UHGV-1359638_55	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1359638_55	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1359638_56	phrog_1194	67.4	2e-19	N/A	unknown function
eggNOG-mapper	UHGV-1359638_56	742740.HMPREF9474_03515	238.0	0	N/A	N/A
structural_annotation	UHGV-1359638_56	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1359638_57	phrog_13879	637.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1359638_57	742740.HMPREF9474_03516	1353.0	0	N/A	N/A
structural_annotation	UHGV-1359638_57	PF03256,PF16466,PF13550,MF_00813,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1359638_58	phrog_18725	113.2	2.2e-33	N/A	unknown function
eggNOG-mapper	UHGV-1359638_58	742740.HMPREF9474_03517	284.0	0	N/A	N/A
eggNOG-mapper	UHGV-1359638_59	742740.HMPREF9474_03518	284.0	0	N/A	N/A
PHROG	UHGV-1359638_60	phrog_19111	75.6	3.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-1359638_60	742740.HMPREF9474_03519	601.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-1359638_60	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
structural_annotation	UHGV-1359638_60	PF16351	N/A	N/A	N/A	N/A
PHROG	UHGV-1359638_62	phrog_1009	41.0	0.000000000029	N/A	unknown function
UniRef90	UHGV-1359638_62	UniRef90_A0A3E2WI44	150.0	1.4013e-45	Branched-chain amino acid ABC transporter permease	N/A
eggNOG-mapper	UHGV-1359638_62	742740.HMPREF9474_03521	177.0	0	N/A	N/A
PHROG	UHGV-1359638_63	phrog_1129	73.7	1.6e-21	holin	lysis
UniRef90	UHGV-1359638_63	UniRef90_A0A2N0KEV2	166.0	0	Enolase	N/A
eggNOG-mapper	UHGV-1359638_63	742740.HMPREF9474_03522	166.0	0	N/A	N/A
Pfam	UHGV-1359638_63	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1359638_63	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1359638_64	phrog_6782	43.0	0.0000000000031	tail fiber protein	tail
UniRef90	UHGV-1359638_64	UniRef90_A0A174NC72	390.0	0	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1359638_64	742733.HMPREF9469_00973	162.0	1.05e-37	N/A	N/A
Pfam	UHGV-1359638_64	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-1359638_64	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1359638_65	phrog_2310	54.8	7e-16	N/A	unknown function
eggNOG-mapper	UHGV-1359638_65	1391647.AVSV01000022_gene2576	60.5	0.0000000000316	N/A	N/A
KOfam	UHGV-1359638_66	K17733	152.7	2.8026e-45	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-1359638_66	phrog_2649	140.6	1.40004e-41	endolysin	lysis
UniRef90	UHGV-1359638_66	UniRef90_A0A174GZ78	505.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
eggNOG-mapper	UHGV-1359638_66	742733.HMPREF9469_01368	260.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-1359638_66	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-1359638_66	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-1359638_66	PF02557,PF19127,MF_01924,NF007557,TIGR04035,COG2173	N/A	N/A	N/A	N/A
UniRef90	UHGV-1359638_68	UniRef90_UPI00156F2295	153.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1359638_68	1120998.AUFC01000012_gene488	76.3	2.38e-17	sequence-specific DNA binding	N/A
Pfam	UHGV-1359638_68	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1359638_68	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1359638_68	PF13560,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1359638	Yes	41,944	45	100	1
UHGV-0114024	No	42,484	45	100	1
UHGV-1801199	No	12,740	49	31	1