vOTU vOTU-054936

vOTU: vOTU-054936

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-054936
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00040 → vSUBFAM-05155 → vGENUS-10510 → vSUBGEN-13855 → vOTU-054936
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Bittarella → Bittarella massiliensis
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-1359992
Biosample ID	N/A
Genome length (bp)	35,131 bps
CheckV completeness	100.00% (Complete)
CDS count	49
CDS density	91.88%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Bittarella → Bittarella massiliensis	Total connections	2	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Bittarella → Bittarella massiliensis	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1359992_1	phrog_3287	148.4	5.04467e-44	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1359992_1	1408437.JNJN01000001_gene1713	484.0	0	N/A	N/A
structural_annotation	UHGV-1359992_1	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1359992_2	1232449.BAHV02000016_gene1815	72.8	0.0000000000114	N/A	N/A
PHROG	UHGV-1359992_3	phrog_2712	56.9	3.1e-16	tail fiber protein	tail
eggNOG-mapper	UHGV-1359992_3	1415630.U771_15275	52.8	0.00000646	N/A	N/A
structural_annotation	UHGV-1359992_3	NF012201	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359992_4	PF07041	N/A	N/A	N/A	N/A
KOfam	UHGV-1359992_5	K07273	219.5	0	acm; lysozyme	N/A
PHROG	UHGV-1359992_5	phrog_291	176.4	0	endolysin	lysis
UniRef90	UHGV-1359992_5	UniRef90_UPI00073F7B2D	619.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1359992_5	1304880.JAGB01000002_gene2202	251.0	0	Glycosyl hydrolase, family 25	N/A
Pfam	UHGV-1359992_5	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-1359992_5	PF01476	N/A	N/A	LysM domain	LysM
NCBIFam	UHGV-1359992_5	NF012230.0	N/A	N/A	LWXIA domain-containing protein	N/A
COG	UHGV-1359992_5	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1359992_5	PF01183,PF11623,COG3757,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-1359992_6	phrog_199	79.8	3.1e-23	holin	lysis
UniRef90	UHGV-1359992_6	UniRef90_A0A7X1I7X9	265.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-1359992_6	411459.RUMOBE_01714	154.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1359992_6	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1359992_6	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1359992_6	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1359992_6	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1359992_8	phrog_22978	64.9	3.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-1359992_8	1410650.JHWL01000003_gene2814	105.0	1.61e-19	N/A	N/A
structural_annotation	UHGV-1359992_8	PF09486	N/A	N/A	N/A	N/A
UniRef90	UHGV-1359992_10	UniRef90_A0A3A9HXZ9	85.9	4.72e-21	CopG family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1359992_10	663278.Ethha_2491	82.4	1.92e-20	N/A	N/A
structural_annotation	UHGV-1359992_10	PF01402,NF041793,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-1359992_12	phrog_7940	220.4	0	N/A	unknown function
UniRef90	UHGV-1359992_12	UniRef90_A0A845RCP8	220.0	0	Toxin Bro	N/A
eggNOG-mapper	UHGV-1359992_12	1048834.TC41_2417	200.0	0	COG3617 Prophage antirepressor	N/A
Pfam	UHGV-1359992_12	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-1359992_12	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1359992_12	PF02498,PF03374,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-1359992_13	phrog_2158	187.3	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1359992_13	UniRef90_UPI001AA1B25D	582.0	0	Abi family protein	N/A
eggNOG-mapper	UHGV-1359992_13	742765.HMPREF9457_01317	212.0	0	Abi-like protein	N/A
PADLOC	UHGV-1359992_13	AbiD	274.2	0	AbiD	Abi
Pfam	UHGV-1359992_13	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-1359992_13	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-1359992_13	PF07751,COG4823	N/A	N/A	N/A	N/A
KOfam	UHGV-1359992_15	K14059	204.7	0	int; integrase	N/A
PHROG	UHGV-1359992_15	phrog_1	189.1	0	integrase	integration and excision
UniRef90	UHGV-1359992_15	UniRef90_A0A7X5I6Z7	301.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1359992_15	665956.HMPREF1032_02703	198.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1359992_15	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1359992_15	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1359992_15	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1359992_15	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1359992_16	phrog_2546	138.9	3.69999e-41	N/A	unknown function
UniRef90	UHGV-1359992_16	UniRef90_UPI001D126C16	113.0	1.73e-28	zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-1359992_16	1582156.A0A0A8WFW4_9CAUD	112.0	3.78e-29	N/A	N/A
Pfam	UHGV-1359992_16	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
structural_annotation	UHGV-1359992_16	PF13240,TIGR04165	N/A	N/A	N/A	N/A
KOfam	UHGV-1359992_18	K18830	67.4	2e-19	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1359992_18	phrog_8	45.2	0.00000000000067	transcriptional regulator	transcription regulation
UniRef90	UHGV-1359992_18	UniRef90_A0A7G9WGB7	143.0	8.0897e-42	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1359992_18	665956.HMPREF1032_00148	121.0	5.13e-34	N/A	N/A
Pfam	UHGV-1359992_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1359992_18	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1359992_18	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1359992_22	1336234.JAGN01000004_gene538	50.4	0.00000946	N/A	N/A
UniRef90	UHGV-1359992_24	UniRef90_UPI00073ED22A	75.1	0.0000000000000827	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-1359992_24	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1359992_26	phrog_298	64.7	5.6e-19	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1359992_26	UniRef90_UPI001ABE80F6	88.6	1.89e-18	PD-(D/E)XK nuclease family protein	N/A
eggNOG-mapper	UHGV-1359992_26	1218075.BAYA01000003_gene606	95.1	1.16e-21	N/A	N/A
structural_annotation	UHGV-1359992_26	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-1359992_27	phrog_561	165.4	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1359992_27	UniRef90_A0A174RC35	189.0	0	RecT family	N/A
eggNOG-mapper	UHGV-1359992_27	557598.LHK_01792	204.0	0	N/A	N/A
Pfam	UHGV-1359992_27	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-1359992_27	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1359992_28	phrog_398	196.9	0	N/A	unknown function
UniRef90	UHGV-1359992_28	UniRef90_UPI00189E6EA3	224.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-1359992_28	293826.Amet_2584	222.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-1359992_28	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-1359992_28	PF16784	N/A	N/A	N/A	N/A
KOfam	UHGV-1359992_29	K03111	144.9	8.60397e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1359992_29	phrog_44	142.9	1.99965e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1359992_29	UniRef90_A0A7U9NQ54	234.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1359992_29	1507.HMPREF0262_00434	234.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1359992_29	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1359992_29	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1359992_29	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1359992_29	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1359992_29	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1359992_30	phrog_270	76.5	4.8e-22	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1359992_30	UniRef90_A0A7U9NQ46	134.0	2.62e-34	N/A	N/A
eggNOG-mapper	UHGV-1359992_30	1507.HMPREF0262_00435	134.0	4.4e-35	N/A	N/A
COG	UHGV-1359992_30	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1359992_30	PF09524,PF01638,TIGR02220,NF040642,COG5625	N/A	N/A	N/A	N/A
PHROG	UHGV-1359992_32	phrog_244	78.6	1e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1359992_32	33035.JPJF01000122_gene2460	142.0	2.21966e-42	N/A	N/A
structural_annotation	UHGV-1359992_32	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-1359992_34	phrog_25245	119.5	1.7e-35	N/A	unknown function
UniRef90	UHGV-1359992_34	UniRef90_UPI0012B5C2F9	222.0	0	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-1359992_34	1507.HMPREF0262_00437	206.0	0	3D domain	N/A
Pfam	UHGV-1359992_34	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-1359992_34	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
KOfam	UHGV-1359992_35	K00558	156.9	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1359992_35	phrog_116	200.1	0	DNA methyltransferase	other
UniRef90	UHGV-1359992_35	UniRef90_A0A316NA61	350.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1359992_35	718252.FP2_16350	339.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1359992_35	oMTase_00004	199.1	0	orphan methyltransferase	RM
Pfam	UHGV-1359992_35	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1359992_35	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1359992_35	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1359992_35	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-1359992_36	UniRef90_UPI0009339F41	164.0	0	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-1359992_36	NF007260,COG3809	N/A	N/A	N/A	N/A
PHROG	UHGV-1359992_37	phrog_22543	59.8	5.2e-17	N/A	unknown function
UniRef90	UHGV-1359992_38	UniRef90_A0A7X1LWE2	149.0	1.4013e-45	N/A	N/A
Pfam	UHGV-1359992_38	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1359992_38	PF04448,NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1359992_40	phrog_36	53.6	0.0000000000000045	transcriptional regulator	transcription regulation
UniRef90	UHGV-1359992_40	UniRef90_UPI00189CA0E1	129.0	6.01e-36	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-1359992_40	1540257.JQMW01000004_gene433	120.0	2.26e-33	N/A	N/A
structural_annotation	UHGV-1359992_40	PF07374	N/A	N/A	N/A	N/A
PHROG	UHGV-1359992_41	phrog_518	102.8	2.7e-30	Rha-like transcriptional regulator	transcription regulation
UniRef90	UHGV-1359992_41	UniRef90_A5MYL4	227.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1359992_41	431943.CKL_1850	227.0	0	phage regulatory protein, rha family	N/A
Pfam	UHGV-1359992_41	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-1359992_41	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-1359992_41	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-1359992_41	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
KOfam	UHGV-1359992_42	K07474	58.2	2.7e-16	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1359992_42	phrog_51	65.0	1e-19	terminase small subunit	head and packaging
UniRef90	UHGV-1359992_42	UniRef90_A0A7X1LX59	245.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1359992_42	762051.LKI_09660	54.7	0.000000226	Terminase small subunit	N/A
Pfam	UHGV-1359992_42	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1359992_42	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1359992_42	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1359992_43	K06909	126.4	2.7e-37	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1359992_43	phrog_979	167.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1359992_43	UniRef90_A0A7X1LWQ0	901.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1359992_43	665956.HMPREF1032_03884	499.0	0	Terminase-like family	N/A
Pfam	UHGV-1359992_43	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1359992_43	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1359992_43	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1359992_45	phrog_156	126.9	1.3e-37	portal protein	head and packaging
eggNOG-mapper	UHGV-1359992_45	1408437.JNJN01000001_gene1708	405.0	0	N/A	N/A
structural_annotation	UHGV-1359992_45	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1359992_46	phrog_14606	47.8	0.00000000000021	N/A	unknown function
eggNOG-mapper	UHGV-1359992_46	755731.Clo1100_2435	108.0	4.61e-25	N/A	N/A
PHROG	UHGV-1359992_47	phrog_422	155.3	0	major head protein	head and packaging
UniRef90	UHGV-1359992_47	UniRef90_A0A7X1IDU9	656.0	0	Chitobiase/beta-hexosaminidase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1359992_47	1408437.JNJN01000001_gene1710	295.0	0	N/A	N/A
Pfam	UHGV-1359992_47	PF13287	N/A	N/A	Fn3 associated	Fn3_assoc
structural_annotation	UHGV-1359992_47	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1359992_48	PF11650	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1359992	Yes	35,131	54	100	1
UHGV-0384950	No	10,297	55	27	1