vOTU vOTU-055342

vOTU: vOTU-055342

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-055342
Number of genomes	3
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00074 → vSUBFAM-00832 → vGENUS-01527 → vSUBGEN-41248 → vOTU-055342
Host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → Borkfalkiaceae → UBA10281 → UBA10281 sp900767815
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1362872
Biosample ID	SAMN03283273
Genome length (bp)	39,799 bps
CheckV completeness	100.00% (Complete)
CDS count	66
CDS density	93.61%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → Borkfalkiaceae → UBA10281 → UBA10281 sp900767815	Total connections	56	Host agreement	98.21
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1362872_1	phrog_27197	56.3	6e-16	N/A	unknown function
eggNOG-mapper	UHGV-1362872_1	573061.Clocel_3578	50.4	0.00000708	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1362872_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
PHROG	UHGV-1362872_3	phrog_1366	281.2	0	N/A	unknown function
UniRef90	UHGV-1362872_3	UniRef90_A0A850RF01	285.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1362872_3	1123288.SOV_1c03840	268.0	0	AAA domain	N/A
Pfam	UHGV-1362872_3	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-1362872_3	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-1362872_3	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-1362872_6	K03111	142.8	3.80032e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1362872_6	phrog_44	139.8	1.79997e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1362872_6	UniRef90_R7FWV6	153.0	2.8026e-45	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1362872_6	264732.Moth_0129	120.0	5.63e-33	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1362872_6	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1362872_6	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1362872_6	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1362872_6	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1362872_6	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1362872_7	phrog_190	92.6	4.2e-27	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1362872_7	UniRef90_UPI000C817A46	124.0	3.51e-34	N/A	N/A
eggNOG-mapper	UHGV-1362872_7	445974.CLORAM_02947	109.0	4.21e-29	N/A	N/A
Pfam	UHGV-1362872_7	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1362872_7	PF06356,MF_04160,NF033179,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-1362872_8	phrog_2562	80.8	2.3e-23	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1362872_8	UniRef90_A0A2V2GML5	109.0	6.28e-25	N/A	N/A
Pfam	UHGV-1362872_8	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-1362872_8	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1362872_8	PF09681,TIGR01714,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-1362872_13	phrog_757	58.5	9.4e-17	DNA methyltransferase	other
eggNOG-mapper	UHGV-1362872_13	428127.EUBDOL_01513	249.0	0	N/A	N/A
AcrCatalog	UHGV-1362872_13	cluster_47493	155.0	0	NA	N/A
structural_annotation	UHGV-1362872_14	PF18350,MF_01354,TIGR00405,COG2139	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1362872_20	PF10842,MF_00436,NF011232,COG1923	N/A	N/A	N/A	N/A
PHROG	UHGV-1362872_21	phrog_3136	104.9	5e-31	N/A	unknown function
UniRef90	UHGV-1362872_21	UniRef90_A0A6N7TMC2	97.1	5.96e-22	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1362872_21	655815.ZPR_3437	52.0	0.0000061	ASCH	N/A
COG	UHGV-1362872_21	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1362872_21	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1362872_23	phrog_36	45.4	0.0000000000013	transcriptional regulator	transcription regulation
KOfam	UHGV-1362872_25	K06909	66.1	6.1e-19	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1362872_25	phrog_2	53.9	0.000000000000004	terminase large subunit	head and packaging
UniRef90	UHGV-1362872_25	UniRef90_A0A345BNW5	432.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1362872_25	552396.HMPREF0863_01628	115.0	2.06e-25	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-1362872_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
PHROG	UHGV-1362872_26	phrog_533	160.5	0	portal protein	head and packaging
UniRef90	UHGV-1362872_26	UniRef90_A0A345BNV5	410.0	0	Putative portal protein	N/A
eggNOG-mapper	UHGV-1362872_26	33035.JPJF01000093_gene2257	101.0	6.7e-20	N/A	N/A
structural_annotation	UHGV-1362872_26	PF05133,MF_04120,TIGR01542,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1362872_27	phrog_581	83.7	3e-24	minor head protein	head and packaging
UniRef90	UHGV-1362872_27	UniRef90_UPI0011CC4755	96.7	3.12e-17	minor capsid protein	N/A
eggNOG-mapper	UHGV-1362872_27	1160721.RBI_II00541	66.6	0.000000013	N/A	N/A
Pfam	UHGV-1362872_27	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1362872_27	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1362872_29	phrog_194	96.1	4.4e-28	head scaffolding protein	head and packaging
UniRef90	UHGV-1362872_29	UniRef90_UPI0001E39A27	82.8	5.25e-16	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1362872_29	1444310.JANV01000162_gene1175	52.8	0.0000069	Phage minor structural protein GP20	N/A
Pfam	UHGV-1362872_29	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1362872_29	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1362872_30	phrog_422	300.1	0	major head protein	head and packaging
UniRef90	UHGV-1362872_30	UniRef90_A0A3C2DU69	530.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-1362872_30	545697.HMPREF0216_02849	352.0	0	N/A	N/A
structural_annotation	UHGV-1362872_30	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1362872_33	PF11114	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1362872_34	PF06199,PF08873,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1362872_37	PF14594,TIGR01646,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1362872_38	phrog_38707	60.1	1.8e-17	N/A	unknown function
eggNOG-mapper	UHGV-1362872_38	552398.HMPREF0866_01593	135.0	1.78e-31	tail collar domain protein	N/A
COG	UHGV-1362872_38	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1362872_39	PF04721,TIGR03711	N/A	N/A	N/A	N/A
PHROG	UHGV-1362872_46	phrog_21718	43.4	0.0000000000051	N/A	unknown function
PHROG	UHGV-1362872_48	phrog_16490	42.2	0.000000000015	N/A	unknown function
eggNOG-mapper	UHGV-1362872_48	476272.RUMHYD_01770	76.3	0.0000000000000236	N/A	N/A
structural_annotation	UHGV-1362872_49	PF18573,NF033147	N/A	N/A	N/A	N/A
COG	UHGV-1362872_51	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
KOfam	UHGV-1362872_54	K14059	136.8	2.69999e-40	int; integrase	N/A
PHROG	UHGV-1362872_54	phrog_1	129.0	4.5e-38	integrase	integration and excision
UniRef90	UHGV-1362872_54	UniRef90_A0A354UN09	655.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1362872_54	469618.FVAG_01276	116.0	2.77e-26	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1362872_54	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1362872_54	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1362872_54	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1362872_55	UniRef90_A0A354UMM3	175.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1362872_55	1410631.JHWZ01000001_gene1054	52.8	0.00000291	Putative restriction endonuclease	N/A
Pfam	UHGV-1362872_55	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1362872_55	COG4636	N/A	N/A	Endonuclease, Uma2 family (restriction endonuclease fold)	N/A
structural_annotation	UHGV-1362872_55	PF13560,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1362872_57	UniRef90_UPI001BDFF2FE	144.0	5.77e-34	TerB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1362872_57	1123009.AUID01000002_gene2092	126.0	1.58e-28	TerB N-terminal domain	N/A
COG	UHGV-1362872_57	COG4103	N/A	N/A	Tellurite resistance protein TerB	N/A
KOfam	UHGV-1362872_58	K22300	54.5	0.0000000000000022	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1362872_58	phrog_8	71.7	6.3e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-1362872_58	UniRef90_UPI001EEA5683	68.9	0.00000000000214	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1362872_58	706434.HMPREF9429_00594	65.5	0.00000000000526	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1362872_58	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1362872_58	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1362872_58	PF13560,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1362872_59	phrog_31564	46.2	0.00000000000089	N/A	unknown function
UniRef90	UHGV-1362872_61	UniRef90_A0A3B9SF96	57.0	0.00000000359	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1362872_61	PF05339	N/A	N/A	N/A	DUF739
structural_annotation	UHGV-1362872_61	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1362872_63	K18830	44.1	0.0000000000048	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
UniRef90	UHGV-1362872_63	UniRef90_A0A3C2DW28	130.0	2.91e-38	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1362872_63	1452536.JARE01000052_gene1705	51.6	0.000000789	Cupin domain	N/A
Pfam	UHGV-1362872_63	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1362872_63	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1362872_63	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1362872_66	phrog_4433	71.2	1.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-1362872_66	886882.PPSC2_p0363	105.0	9.7e-26	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1362872_66	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1362872	Yes	39,799	41	100	1
UHGV-0132966	No	39,799	41	100	1
UHGV-0391242	No	39,799	41	100	1