vOTU vOTU-055351

vOTU: vOTU-055351

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-055351
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00035 → vSUBFAM-00258 → vGENUS-00437 → vSUBGEN-00218 → vOTU-055351
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → CAG-217 → CAG-217 sp000436335
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1362941
Biosample ID	SAMN05414987
Genome length (bp)	32,513 bps
CheckV completeness	100.00% (Complete)
CDS count	50
CDS density	92.63%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → CAG-217 → CAG-217 sp000436335	Total connections	342	Host agreement	99.71
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → CAG-217 → CAG-217 sp000436335	Total connections	91	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1362941_3	PF19923,NF009981,COG0355	N/A	N/A	N/A	N/A
UniRef90	UHGV-1362941_4	UniRef90_A0A315YPS7	75.1	0.0000000000000308	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1362941_4	1408312.JNJS01000001_gene1338	52.0	0.00000092	sequence-specific DNA binding	N/A
COG	UHGV-1362941_4	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
UniRef90	UHGV-1362941_6	UniRef90_R6J3S0	580.0	0	Peptidase_C39_2 domain-containing protein	N/A
Pfam	UHGV-1362941_6	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
structural_annotation	UHGV-1362941_6	PF11814,NF033920,COG4990	N/A	N/A	N/A	N/A
PHROG	UHGV-1362941_7	phrog_263	93.5	1.2e-27	holin	lysis
UniRef90	UHGV-1362941_7	UniRef90_R6JQI4	155.0	0	Holin SPP1 family	N/A
eggNOG-mapper	UHGV-1362941_7	1121344.JHZO01000003_gene952	78.2	8.37e-18	SPP1 phage holin	N/A
Pfam	UHGV-1362941_7	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-1362941_7	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-1362941_7	PF04688	N/A	N/A	N/A	N/A
PHROG	UHGV-1362941_8	phrog_4105	80.7	1.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-1362941_8	397288.C806_00056	89.4	1.69e-21	N/A	N/A
UniRef90	UHGV-1362941_9	UniRef90_R6J123	116.0	3.69e-33	ATP synthase B chain	N/A
UniRef90	UHGV-1362941_10	UniRef90_A0A316R9D9	1103.0	0	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1362941_10	641107.CDLVIII_4353	57.8	0.000000915	N/A	N/A
Pfam	UHGV-1362941_10	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-1362941_10	PF00386,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1362941_11	phrog_13289	174.0	0	tail protein	tail
UniRef90	UHGV-1362941_11	UniRef90_A0A316RM27	1015.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1362941_11	1280689.AUJC01000011_gene1532	116.0	7.53e-25	Prophage endopeptidase tail	N/A
Pfam	UHGV-1362941_11	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1362941_11	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1362941_11	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-1362941_12	phrog_33	75.8	9.8e-22	distal tail protein Dit	tail
UniRef90	UHGV-1362941_12	UniRef90_UPI0019689066	103.0	2.11e-23	phage tail protein	N/A
eggNOG-mapper	UHGV-1362941_12	1232452.BAIB02000007_gene1615	139.0	7.81e-38	phage tail	N/A
Pfam	UHGV-1362941_12	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-1362941_12	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1362941_12	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1362941_12	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1362941_13	phrog_1533	526.4	0	tail length tape measure protein	tail
UniRef90	UHGV-1362941_13	UniRef90_A0A316R7C3	1076.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1362941_13	35241.Q9AYV8_BPTU2	387.0	0	peptidoglycan catabolic process	N/A
Pfam	UHGV-1362941_13	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1362941_13	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
PHROG	UHGV-1362941_14	phrog_25901	70.6	3.4e-20	N/A	unknown function
eggNOG-mapper	UHGV-1362941_14	411468.CLOSCI_01498	63.5	0.000000000135	N/A	N/A
PHROG	UHGV-1362941_15	phrog_13494	59.8	3.9e-17	N/A	unknown function
eggNOG-mapper	UHGV-1362941_15	742741.HMPREF9475_00431	53.1	0.000000178	N/A	N/A
PHROG	UHGV-1362941_16	phrog_88	136.6	1.3e-40	major tail protein	tail
UniRef90	UHGV-1362941_16	UniRef90_A0A316RAJ2	382.0	0	Major tail protein	N/A
eggNOG-mapper	UHGV-1362941_16	411459.RUMOBE_01728	224.0	0	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1362941_16	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-1362941_16	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1362941_16	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1362941_17	phrog_78	50.2	0.000000000000055	tail terminator	connector
eggNOG-mapper	UHGV-1362941_17	411468.CLOSCI_01495	95.1	1.44e-23	N/A	N/A
structural_annotation	UHGV-1362941_17	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
UniRef90	UHGV-1362941_18	UniRef90_A0A174MCG9	90.1	2.71e-20	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-1362941_18	411459.RUMOBE_01730	90.1	4.55e-21	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-1362941_18	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1362941_18	PF04883,TIGR01725	N/A	N/A	N/A	N/A
UniRef90	UHGV-1362941_19	UniRef90_A0A316R8D9	221.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-1362941_19	195103.CPF_1582	70.9	0.0000000000000204	Phage head-tail adaptor	N/A
Pfam	UHGV-1362941_19	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-1362941_19	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1362941_19	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-1362941_20	UniRef90_A0A316R9F5	173.0	0	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1362941_20	411459.RUMOBE_01732	75.9	8.43e-17	N/A	N/A
Pfam	UHGV-1362941_20	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-1362941_20	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-1362941_20	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1362941_21	phrog_10	180.7	0	major head protein	head and packaging
UniRef90	UHGV-1362941_21	UniRef90_A0A316RM35	586.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1362941_21	1391647.AVSV01000039_gene1100	312.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1362941_21	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1362941_21	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1362941_21	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1362941_21	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1362941_22	K01358	103.1	4.4e-30	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1362941_22	phrog_94	177.0	0	head maturation protease	head and packaging
UniRef90	UHGV-1362941_22	UniRef90_A0A316R8I3	476.0	0	Clp protease	N/A
eggNOG-mapper	UHGV-1362941_22	411468.CLOSCI_01490	197.0	0	Clp protease	N/A
Pfam	UHGV-1362941_22	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1362941_22	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1362941_22	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1362941_23	phrog_12	301.1	0	portal protein	head and packaging
UniRef90	UHGV-1362941_23	UniRef90_A0A316R7D3	841.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1362941_23	411459.RUMOBE_01735	444.0	0	N/A	N/A
Pfam	UHGV-1362941_23	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-1362941_23	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-1362941_23	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1362941_23	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1362941_24	phrog_9	359.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1362941_24	UniRef90_A0A316R7M0	1158.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1362941_24	411459.RUMOBE_01737	710.0	0	N/A	N/A
Pfam	UHGV-1362941_24	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1362941_24	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1362941_24	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1362941_24	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1362941_25	phrog_83	62.6	7.6e-18	terminase small subunit	head and packaging
UniRef90	UHGV-1362941_25	UniRef90_A0A316RD76	332.0	0	Phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-1362941_25	411468.CLOSCI_01487	124.0	8.28e-34	Phage terminase, small subunit	N/A
Pfam	UHGV-1362941_25	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-1362941_25	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1362941_25	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1362941_26	phrog_144	91.9	6.8e-27	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1362941_26	UniRef90_A0A844FGQ3	112.0	8.47e-29	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1362941_26	411459.RUMOBE_01739	112.0	9.03e-30	N/A	N/A
PHROG	UHGV-1362941_27	phrog_1558	53.0	3.3e-20	N/A	unknown function
UniRef90	UHGV-1362941_27	UniRef90_A0A316RAK3	204.0	0	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1362941_27	411459.RUMOBE_01740	56.6	0.0000000266	N/A	N/A
Pfam	UHGV-1362941_27	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
structural_annotation	UHGV-1362941_27	PF06530,NF008895,COG1595	N/A	N/A	N/A	N/A
PHROG	UHGV-1362941_31	phrog_15609	344.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1362941_31	1514668.JOOA01000001_gene225	88.2	5.76e-17	N/A	N/A
structural_annotation	UHGV-1362941_31	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-1362941_32	phrog_8470	471.0	0	N/A	unknown function
UniRef90	UHGV-1362941_32	UniRef90_UPI001C0AE9DA	177.0	1.4013e-45	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1362941_32	1117108.PAALTS15_13637	148.0	1e-35	PcfJ-like protein	N/A
Pfam	UHGV-1362941_32	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1362941_32	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1362941_33	phrog_35860	46.5	0.00000000000055	N/A	unknown function
UniRef90	UHGV-1362941_33	UniRef90_UPI001B3C69A2	70.9	0.000000000000138	Cas9 inhibitor AcrIIA9 family protein	N/A
eggNOG-mapper	UHGV-1362941_33	457412.RSAG_01173	56.2	0.0000000669	PcfK-like protein	N/A
Pfam	UHGV-1362941_33	PF14058	N/A	N/A	PcfK-like protein	PcfK
structural_annotation	UHGV-1362941_33	PF14058	N/A	N/A	N/A	N/A
PHROG	UHGV-1362941_36	phrog_190	106.5	2.1e-31	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1362941_36	UniRef90_R6ISF1	264.0	0	N/A	N/A
eggNOG-mapper	UHGV-1362941_36	563031.HMPREF0666_01122	92.8	2.12e-22	N/A	N/A
Pfam	UHGV-1362941_36	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1362941_36	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1362941_37	phrog_34937	212.8	0	N/A	unknown function
PHROG	UHGV-1362941_38	phrog_3584	160.1	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1362941_38	642492.Clole_0725	123.0	1.46e-31	N/A	N/A
structural_annotation	UHGV-1362941_38	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-1362941_40	phrog_33952	206.6	0	N/A	unknown function
PHROG	UHGV-1362941_41	phrog_668	50.1	0.000000000000013	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1362941_42	UniRef90_A0A316R8G0	127.0	2.41e-37	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1362941_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1362941_42	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1362941_43	phrog_8	62.4	1e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1362941_43	UniRef90_A0A316R9J7	233.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1362941_43	397291.C804_05804	65.5	0.00000000000463	TRANSCRIPTIONal	N/A
Pfam	UHGV-1362941_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1362941_43	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1362941_43	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1362941_44	phrog_87	87.7	9.6e-26	metallo-protease	other
UniRef90	UHGV-1362941_44	UniRef90_A0A316RCR6	258.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-1362941_44	1507.HMPREF0262_00423	114.0	7.88e-31	IrrE N-terminal-like domain	N/A
Pfam	UHGV-1362941_44	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1362941_44	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1362941_44	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1362941_45	phrog_16443	46.1	0.00000000000085	N/A	unknown function
eggNOG-mapper	UHGV-1362941_45	1118057.CAGX01000058_gene115	53.9	0.0000000555	N/A	N/A
KOfam	UHGV-1362941_46	K02342	182.6	0	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-1362941_46	phrog_192	154.8	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1362941_46	UniRef90_A0A316R7F3	530.0	0	Exonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-1362941_46	545694.TREPR_3623	143.0	7.73e-37	EXOIII	N/A
PADLOC	UHGV-1362941_46	cd06127	127.7	1.2e-37	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-1362941_46	PF00929	N/A	N/A	Exonuclease	RNase_T
NCBIFam	UHGV-1362941_46	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-1362941_46	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
KOfam	UHGV-1362941_47	K14059	222.1	0	int; integrase	N/A
PHROG	UHGV-1362941_47	phrog_1	196.7	0	integrase	integration and excision
UniRef90	UHGV-1362941_47	UniRef90_A0A316RE68	751.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1362941_47	1161902.HMPREF0378_0144	202.0	0	DNA integration	N/A
Pfam	UHGV-1362941_47	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1362941_47	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1362941_47	PF00589,PF13102,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1362941_50	UniRef90_A0A316R7E8	85.1	7.23e-21	RHH_1 domain-containing protein	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1362941	Yes	32,513	52	100	1
UHGV-0197258	No	33,352	51	100	1
UHGV-0080846	No	33,298	52	100	1
UHGV-1463822	No	22,697	50	71	1