vOTU vOTU-055447

vOTU: vOTU-055447

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-055447
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00079 → vGENUS-00402 → vSUBGEN-41294 → vOTU-055447
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1305083
Biosample ID	SAMEA3951637
Genome length (bp)	40,288 bps
CheckV completeness	100.00% (Complete)
CDS count	67
CDS density	87.49%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	239	Host agreement	78.66
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1305083_1	phrog_6900	222.5	0	tail length tape measure protein	tail
UniRef90	UHGV-1305083_1	UniRef90_A0A0D0SGC8	317.0	0	Phage minor tail protein	N/A
eggNOG-mapper	UHGV-1305083_1	1437608.BBIA_2554	291.0	0	phage tail tape measure protein	N/A
COG	UHGV-1305083_1	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1305083_1	PF20155,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1305083_2	phrog_33	58.0	2.4e-16	distal tail protein Dit	tail
UniRef90	UHGV-1305083_2	UniRef90_UPI001C0FCFFA	254.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-1305083_2	1033737.CAEV01000029_gene285	90.5	2.52e-18	Phage tail protein	N/A
COG	UHGV-1305083_2	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1305083_2	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1305083_3	phrog_538	109.6	2.6e-32	minor tail protein	tail
UniRef90	UHGV-1305083_3	UniRef90_UPI001C113FEF	228.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-1305083_3	665956.HMPREF1032_02940	90.9	1.14e-17	N/A	N/A
Pfam	UHGV-1305083_3	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-1305083_3	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1305083_4	phrog_9534	136.6	2.4e-40	head protein	head and packaging
UniRef90	UHGV-1305083_4	UniRef90_A0A0E0TFT0	88.2	2.58e-16	Phage-related putative tail protein	N/A
eggNOG-mapper	UHGV-1305083_4	431943.CKL_4054	93.2	5.85e-18	COG NOG18825 non supervised orthologous group	N/A
KOfam	UHGV-1305083_7	K03646	51.5	0.000000000000018	tolA; colicin import membrane protein	N/A
eggNOG-mapper	UHGV-1305083_7	476272.RUMHYD_00002	111.0	2.28e-22	N/A	N/A
structural_annotation	UHGV-1305083_7	PF10651	N/A	N/A	N/A	N/A
KOfam	UHGV-1305083_9	K07273	140.5	1.70006e-41	acm; lysozyme	N/A
PHROG	UHGV-1305083_9	phrog_291	111.8	5.9e-33	endolysin	lysis
UniRef90	UHGV-1305083_9	UniRef90_A0A1Q6T343	649.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-1305083_9	665956.HMPREF1032_02708	231.0	0	N/A	N/A
Pfam	UHGV-1305083_9	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-1305083_9	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
structural_annotation	UHGV-1305083_9	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1305083_10	33035.JPJF01000090_gene94	62.8	0.0000000000152	N/A	N/A
PHROG	UHGV-1305083_11	phrog_13256	56.0	4.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-1305083_11	1226322.HMPREF1545_00132	52.8	0.0000000274	N/A	N/A
KOfam	UHGV-1305083_12	K07684	42.2	0.000000000014	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	N/A
Pfam	UHGV-1305083_12	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-1305083_12	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
PHROG	UHGV-1305083_13	phrog_3754	92.4	5e-27	N/A	unknown function
eggNOG-mapper	UHGV-1305083_13	476272.RUMHYD_01764	146.0	7.42688e-44	N/A	N/A
PHROG	UHGV-1305083_14	phrog_21718	116.7	1.6e-34	N/A	unknown function
eggNOG-mapper	UHGV-1305083_14	476272.RUMHYD_01768	98.6	2.47e-24	N/A	N/A
PHROG	UHGV-1305083_15	phrog_22984	78.1	1.3e-23	N/A	unknown function
PHROG	UHGV-1305083_16	phrog_16490	129.5	1.6e-39	N/A	unknown function
eggNOG-mapper	UHGV-1305083_16	1408437.JNJN01000043_gene803	92.0	1.37e-19	N/A	N/A
PHROG	UHGV-1305083_17	phrog_20016	193.1	0	N/A	unknown function
UniRef90	UHGV-1305083_17	UniRef90_A0A285PT46	195.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1305083_17	1226322.HMPREF1545_00077	171.0	0	N/A	N/A
structural_annotation	UHGV-1305083_17	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1305083_18	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-1305083_21	K14059	157.9	0	int; integrase	N/A
PHROG	UHGV-1305083_21	phrog_1	161.7	0	integrase	integration and excision
UniRef90	UHGV-1305083_21	UniRef90_UPI001F166C84	397.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1305083_21	693746.OBV_25530	275.0	0	Phage integrase family	N/A
Pfam	UHGV-1305083_21	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1305083_21	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1305083_21	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1305083_22	500635.MITSMUL_05163	75.1	0.0000000000022	N/A	N/A
UniRef90	UHGV-1305083_25	UniRef90_A0A8D9PDN2	84.0	4.55e-20	DNA-binding protein	N/A
structural_annotation	UHGV-1305083_25	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1305083_27	K07741	55.7	0.0000000000000017	antB; anti-repressor protein	N/A
PHROG	UHGV-1305083_27	phrog_130	165.5	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1305083_27	UniRef90_A0A396LJD2	287.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-1305083_27	663952.SDD27957_09050	229.0	0	COG3617 Prophage antirepressor	N/A
Pfam	UHGV-1305083_27	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-1305083_27	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1305083_27	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-1305083_27	PF02498,PF03374,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
UniRef90	UHGV-1305083_29	UniRef90_A0A367GIH6	81.6	3.67e-18	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1305083_29	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1305083_29	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1305083_29	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1305083_30	760568.Desku_0919	77.4	0.0000000000000062	N/A	N/A
structural_annotation	UHGV-1305083_30	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-1305083_34	phrog_674	149.1	2.94273e-44	N/A	unknown function
UniRef90	UHGV-1305083_34	UniRef90_A0A847VXN8	167.0	0	N/A	N/A
eggNOG-mapper	UHGV-1305083_34	1408437.JNJN01000039_gene373	162.0	1.4013e-45	N/A	N/A
Pfam	UHGV-1305083_34	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1305083_34	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-1305083_35	K07455	178.2	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1305083_35	phrog_148	206.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1305083_35	UniRef90_A0A329URJ6	421.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-1305083_35	1408437.JNJN01000039_gene372	367.0	0	RecT family	N/A
Pfam	UHGV-1305083_35	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1305083_35	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1305083_35	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1305083_35	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1305083_36	phrog_392	45.5	0.0000000000016	metal-dependent hydrolase	other
eggNOG-mapper	UHGV-1305083_36	888059.HMPREF9071_2100	65.5	0.0000000000173	Beta-lactamase superfamily domain	N/A
COG	UHGV-1305083_36	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
PHROG	UHGV-1305083_37	phrog_16304	61.7	1.6e-17	N/A	unknown function
Pfam	UHGV-1305083_37	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1305083_37	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1305083_40	K01160	56.4	9.1e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1305083_40	phrog_34	59.5	6.9e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1305083_40	UniRef90_UPI0018ABA1B6	150.0	1.82169e-44	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1305083_40	875454.BAEW01000002_gene491	109.0	3.47e-29	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1305083_40	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1305083_40	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1305083_40	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
UniRef90	UHGV-1305083_45	UniRef90_UPI00156FA052	112.0	7.14e-30	N/A	N/A
eggNOG-mapper	UHGV-1305083_45	1395587.P364_0110505	77.0	1.21e-16	N/A	N/A
structural_annotation	UHGV-1305083_45	PF16475	N/A	N/A	N/A	N/A
PHROG	UHGV-1305083_48	phrog_9958	115.4	3.7e-34	N/A	unknown function
UniRef90	UHGV-1305083_48	UniRef90_UPI001D08A241	157.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-1305083_48	1160721.RBI_I01591	132.0	1.37e-36	N/A	N/A
structural_annotation	UHGV-1305083_48	PF19789	N/A	N/A	N/A	N/A
UniRef90	UHGV-1305083_51	UniRef90_A0A3A6ECV8	75.9	0.00000000000000215	N/A	N/A
structural_annotation	UHGV-1305083_51	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1305083_52	phrog_36	73.0	4.7e-21	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1305083_52	658655.HMPREF0988_02569	52.4	0.00000157	sigma factor activity	N/A
Pfam	UHGV-1305083_52	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1305083_52	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1305083_52	PF04545,PF18323,MF_00674,NF009172,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1305083_53	phrog_419	75.0	2.7e-23	N/A	unknown function
eggNOG-mapper	UHGV-1305083_53	203119.Cthe_2457	102.0	2.25e-26	N/A	N/A
PHROG	UHGV-1305083_54	phrog_606	90.6	1.7e-26	terminase small subunit	head and packaging
UniRef90	UHGV-1305083_54	UniRef90_UPI00195648BB	177.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1305083_54	445972.ANACOL_01838	148.0	5.74532e-44	DNA-packaging protein gp3	N/A
Pfam	UHGV-1305083_54	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1305083_54	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1305083_55	K06909	403.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1305083_55	phrog_3717	159.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-1305083_55	UniRef90_UPI001C3B9235	610.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1305083_55	411471.SUBVAR_06507	569.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1305083_55	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1305083_55	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1305083_55	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1305083_55	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1305083_55	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1305083_56	phrog_64	175.2	0	portal protein	head and packaging
UniRef90	UHGV-1305083_56	UniRef90_UPI0018A8A301	596.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1305083_56	673376.F2VHW1_9CAUD	204.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1305083_56	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1305083_56	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1305083_57	phrog_115	117.0	8.5e-35	minor head protein	head and packaging
UniRef90	UHGV-1305083_57	UniRef90_A0A3A9EHQ6	434.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1305083_57	1504822.CCNO01000013_gene286	185.0	0	cell adhesion	N/A
Pfam	UHGV-1305083_57	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1305083_57	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1305083_57	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1305083_58	phrog_5	72.2	9.7e-21	tail completion or Neck1 protein	connector
UniRef90	UHGV-1305083_58	UniRef90_A0A3A9EIF3	193.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1305083_58	1280685.AUKC01000004_gene1630	108.0	2.03e-28	N/A	N/A
Pfam	UHGV-1305083_58	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1305083_58	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1305083_58	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1305083_59	phrog_194	50.5	0.000000000000039	head scaffolding protein	head and packaging
UniRef90	UHGV-1305083_59	UniRef90_A0A6B9SU02	107.0	2.33e-25	Fibronectin autolysin	N/A
structural_annotation	UHGV-1305083_59	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1305083_60	phrog_544	294.3	0	major head protein	head and packaging
UniRef90	UHGV-1305083_60	UniRef90_UPI0019576143	394.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1305083_60	411471.SUBVAR_06940	382.0	0	N/A	N/A
NCBIFam	UHGV-1305083_60	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1305083_60	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1305083_62	phrog_17977	82.5	3.5e-24	N/A	unknown function
UniRef90	UHGV-1305083_62	UniRef90_A0A285PT57	87.4	6.72e-20	Phage head-tail joining protein	N/A
structural_annotation	UHGV-1305083_62	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1305083_63	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1305083_64	phrog_885	74.4	1.2e-21	major tail protein	tail
UniRef90	UHGV-1305083_64	UniRef90_A0A843J9F0	188.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1305083_64	1504822.CCNO01000012_gene492	218.0	0	N/A	N/A
structural_annotation	UHGV-1305083_64	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1305083_65	phrog_18646	43.2	0.0000000000058	N/A	unknown function
PHROG	UHGV-1305083_67	phrog_20920	99.3	2.7e-29	N/A	unknown function
eggNOG-mapper	UHGV-1305083_67	1121335.Clst_0399	97.4	1.42e-24	N/A	N/A
structural_annotation	UHGV-1305083_67	PF16674	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1305083	Yes	40,288	50	100	1
UHGV-0187494	No	40,288	50	100	1
UHGV-1363511	No	40,288	50	100	1