vOTU vOTU-055707

vOTU: vOTU-055707

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-055707
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00226 → vGENUS-00138 → vSUBGEN-03588 → vOTU-055707
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1364980
Biosample ID	SAMN03283286
Genome length (bp)	46,539 bps
CheckV completeness	100.00% (Complete)
CDS count	66
CDS density	90.32%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens	Total connections	566	Host agreement	76.5
PHIST-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens	Total connections	76	Host agreement	75

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1364980_2	phrog_5968	151.7	4.2039e-45	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1364980_2	UniRef90_R6WTP4	187.0	0	N-terminal phage replisome organizer	N/A
eggNOG-mapper	UHGV-1364980_2	1211817.CCAT010000007_gene1058	129.0	6.89e-33	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-1364980_2	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-1364980_2	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-1364980_2	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1364980_2	PF09681,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-1364980_4	K07455	199.9	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1364980_4	phrog_148	209.9	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1364980_4	UniRef90_R6XVK6	358.0	0	Putative phage RecT family protein	N/A
eggNOG-mapper	UHGV-1364980_4	218284.CCDN010000001_gene901	206.0	0	RecT family	N/A
Pfam	UHGV-1364980_4	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1364980_4	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1364980_4	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1364980_4	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
UniRef90	UHGV-1364980_5	UniRef90_R6WLK2	164.0	0	Conserved domain protein	N/A
Pfam	UHGV-1364980_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1364980_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1364980_5	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1364980_6	phrog_434	334.6	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1364980_6	UniRef90_R6WGP6	630.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-1364980_6	706434.HMPREF9429_00551	364.0	0	YqaJ viral recombinase family protein	N/A
Pfam	UHGV-1364980_6	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1364980_6	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1364980_6	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1364980_6	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-1364980_7	phrog_14367	52.8	0.0000000000000028	N/A	unknown function
UniRef90	UHGV-1364980_7	UniRef90_R6WTN1	169.0	0	Peptidoglycan-binding LysM	N/A
eggNOG-mapper	UHGV-1364980_7	397291.C804_02419	49.3	0.00000615	LysM domain	N/A
Pfam	UHGV-1364980_7	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-1364980_7	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1364980_7	MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1364980_8	NF041909	N/A	N/A	N/A	N/A
PHROG	UHGV-1364980_9	phrog_6058	77.4	1.2e-22	N/A	unknown function
UniRef90	UHGV-1364980_9	UniRef90_A0A0U9H7T0	60.1	0.000000000198	Modification methylase SinI	N/A
eggNOG-mapper	UHGV-1364980_9	1280689.AUJC01000011_gene1497	68.9	0.0000000000000119	N/A	N/A
structural_annotation	UHGV-1364980_9	PF12728,TIGR01764	N/A	N/A	N/A	N/A
KOfam	UHGV-1364980_13	K18830	49.0	0.00000000000015	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
UniRef90	UHGV-1364980_13	UniRef90_R6X1Y8	179.0	0	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-1364980_13	641107.CDLVIII_1309	91.7	2.87e-22	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1364980_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1364980_13	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1364980_13	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1364980_15	K14059	137.9	1.4e-40	int; integrase	N/A
PHROG	UHGV-1364980_15	phrog_1	148.5	6.16571e-44	integrase	integration and excision
UniRef90	UHGV-1364980_15	UniRef90_R6X1Y3	606.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1364980_15	1123288.SOV_2c10320	329.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1364980_15	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1364980_15	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1364980_15	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1364980_16	1378168.N510_03079	56.2	0.000000265	N/A	N/A
structural_annotation	UHGV-1364980_17	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-1364980_22	UniRef90_A0A316S6W0	94.0	1.39e-23	HTH luxR-type domain-containing protein	N/A
Pfam	UHGV-1364980_22	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-1364980_22	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-1364980_22	PF08281,MF_00674,NF001073,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1364980_25	phrog_9467	56.0	6.8e-16	N/A	unknown function
UniRef90	UHGV-1364980_25	UniRef90_UPI0018C475E7	54.7	0.000000114	N/A	N/A
eggNOG-mapper	UHGV-1364980_25	1415774.U728_724	63.2	0.0000000000207	Phage protein (N4 Gp49/phage Sf6 gene 66) family	N/A
dbAPIS	UHGV-1364980_25	APIS070	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1364980_26	1392502.JNIO01000008_gene1280	230.0	0	N/A	N/A
structural_annotation	UHGV-1364980_26	PF21277	N/A	N/A	N/A	N/A
PHROG	UHGV-1364980_28	phrog_4105	84.4	9.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-1364980_28	537013.CLOSTMETH_01753	79.0	1.48e-17	N/A	N/A
PHROG	UHGV-1364980_29	phrog_1141	56.1	6.5e-16	tail fiber protein	tail
UniRef90	UHGV-1364980_29	UniRef90_A0A1Q6R2G9	193.0	0	N/A	N/A
eggNOG-mapper	UHGV-1364980_29	520709.F985_01945	56.2	0.000000164	N/A	N/A
Pfam	UHGV-1364980_29	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-1364980_29	PF14301,COG1382	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1364980_30	PF08948	N/A	N/A	N/A	N/A
PHROG	UHGV-1364980_31	phrog_1640	55.5	0.0000000000000012	tail protein	tail
eggNOG-mapper	UHGV-1364980_31	1123288.SOV_1c10770	84.0	0.0000000000000662	Right handed beta helix region	N/A
COG	UHGV-1364980_31	COG5434	N/A	N/A	Polygalacturonase	N/A
structural_annotation	UHGV-1364980_31	PF03906	N/A	N/A	N/A	N/A
PHROG	UHGV-1364980_32	phrog_9880	546.3	0	N/A	unknown function
UniRef90	UHGV-1364980_32	UniRef90_A0A1Q6RQR6	4482.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1364980_32	1123288.SOV_1c10750	184.0	1.37327e-43	N/A	N/A
Pfam	UHGV-1364980_32	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
UniRef90	UHGV-1364980_33	UniRef90_A0A1Q6RQM5	1330.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-1364980_33	1123288.SOV_2c10740	138.0	4.57e-31	N/A	N/A
structural_annotation	UHGV-1364980_33	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-1364980_34	phrog_418	130.1	5.1e-39	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1364980_34	568816.Acin_1826	104.0	5.41e-25	N/A	N/A
structural_annotation	UHGV-1364980_34	PF16789,TIGR02971,COG3524	N/A	N/A	N/A	N/A
PHROG	UHGV-1364980_35	phrog_308	106.4	2.4e-31	internal virion protein	head and packaging
structural_annotation	UHGV-1364980_35	PF13420,MF_02210,NF011709,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-1364980_36	phrog_376	610.9	0	tail protein	tail
UniRef90	UHGV-1364980_36	UniRef90_A0A0U1KV93	352.0	0	N/A	N/A
eggNOG-mapper	UHGV-1364980_36	568816.Acin_1828	687.0	0	N/A	N/A
structural_annotation	UHGV-1364980_36	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-1364980_37	phrog_394	155.2	0	tail protein	tail
UniRef90	UHGV-1364980_37	UniRef90_A0A0U1KW64	125.0	1.29e-32	N/A	N/A
eggNOG-mapper	UHGV-1364980_37	1123288.SOV_1c10710	125.0	2.17e-33	N/A	N/A
structural_annotation	UHGV-1364980_37	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-1364980_38	phrog_427	64.2	2.1e-18	N/A	unknown function
structural_annotation	UHGV-1364980_38	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-1364980_39	phrog_212	204.7	0	major head protein	head and packaging
UniRef90	UHGV-1364980_39	UniRef90_A0A6J5KPX9	214.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1364980_39	568816.Acin_1831	352.0	0	N/A	N/A
Pfam	UHGV-1364980_39	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-1364980_39	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1364980_40	phrog_458	156.1	0	protease	other
eggNOG-mapper	UHGV-1364980_40	568816.Acin_1832	97.1	5.54e-22	N/A	N/A
PHROG	UHGV-1364980_41	phrog_528	92.8	1.7e-27	N/A	unknown function
eggNOG-mapper	UHGV-1364980_41	1401067.HMPREF0872_06805	72.0	0.00000000000000448	N/A	N/A
PHROG	UHGV-1364980_42	phrog_332	432.6	0	head-tail adaptor	connector
UniRef90	UHGV-1364980_42	UniRef90_UPI001F3F9DD9	547.0	0	portal protein	N/A
eggNOG-mapper	UHGV-1364980_42	568816.Acin_1834	602.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-1364980_42	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-1364980_42	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1364980_44	K06909	85.1	1e-24	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1364980_44	phrog_2	159.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-1364980_44	UniRef90_UPI001D00EC11	407.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1364980_44	568816.Acin_1836	420.0	0	Terminase RNaseH-like domain	N/A
Pfam	UHGV-1364980_44	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1364980_44	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1364980_44	PF03237,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
UniRef90	UHGV-1364980_47	UniRef90_UPI00103300F2	76.6	1.21e-16	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1364980_47	1050201.KB913034_gene791	53.9	0.0000000229	N/A	N/A
Pfam	UHGV-1364980_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1364980_47	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1364980_50	phrog_15863	289.2	0	N/A	unknown function
UniRef90	UHGV-1364980_50	UniRef90_R6WLL6	603.0	0	Cytochrome c domain-containing protein	N/A
eggNOG-mapper	UHGV-1364980_50	693746.OBV_01780	125.0	2.15e-32	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-1364980_50	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
KOfam	UHGV-1364980_56	K03111	55.8	0.0000000000000014	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1364980_56	phrog_44	59.2	1.2e-16	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1364980_56	UniRef90_R6WGR4	253.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1364980_56	546268.NEISUBOT_05135	64.7	0.0000000000153	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1364980_56	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1364980_56	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1364980_56	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1364980_56	PF00436,MF_00984,TIGR00621,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1364980_57	K01160	59.0	1.5e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1364980_57	phrog_140	134.8	4.6e-40	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1364980_57	UniRef90_A0A316S9J1	141.0	2.02e-40	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1364980_57	743719.PaelaDRAFT_5642	122.0	1.02e-33	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1364980_57	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1364980_57	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1364980_57	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1364980_62	phrog_2776	56.8	3.6e-16	N/A	unknown function
UniRef90	UHGV-1364980_62	UniRef90_A0A2S7ZCT0	85.9	3.39e-18	DNA repair protein MmcB-related protein	N/A
eggNOG-mapper	UHGV-1364980_62	1121127.JAFA01000012_gene7357	53.9	0.000000943	N/A	N/A
structural_annotation	UHGV-1364980_62	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
PHROG	UHGV-1364980_65	phrog_12728	151.5	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-1364980_65	742765.HMPREF9457_02125	71.2	0.0000000000000217	N/A	N/A
KOfam	UHGV-1364980_66	K00558	65.1	8.9e-19	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1364980_66	phrog_116	84.0	1.6e-24	DNA methyltransferase	other
UniRef90	UHGV-1364980_66	UniRef90_R6WTQ1	377.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1364980_66	573061.Clocel_0773	183.0	0	PFAM C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1364980_66	oMTase_00023	146.0	0	orphan methyltransferase	RM
Pfam	UHGV-1364980_66	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1364980_66	COG0270	N/A	N/A	DNA-cytosine methylase	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1364980	Yes	46,539	46	100	1
UHGV-0137212	No	46,547	46	100	1
UHGV-1522979	No	27,192	46	58	1