vOTU vOTU-055840

vOTU: vOTU-055840

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-055840
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00831 → vGENUS-09458 → vSUBGEN-11131 → vOTU-055840
Host lineage
Host range breadth
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-1365794
Biosample ID	N/A
Genome length (bp)	53,140 bps
CheckV completeness	100.00% (Complete)
CDS count	68
CDS density	93.04%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1365794_1	phrog_7792	119.5	1.3e-35	N/A	unknown function
UniRef90	UHGV-1365794_1	UniRef90_UPI001D07B780	182.0	0	RAD52 family DNA repair protein	N/A
eggNOG-mapper	UHGV-1365794_1	742767.HMPREF9456_02397	130.0	1.36e-34	N/A	N/A
PHROG	UHGV-1365794_2	phrog_2205	163.9	0	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365794_2	UniRef90_J4TYL5	99.8	3.4e-23	Gam-like protein	N/A
eggNOG-mapper	UHGV-1365794_2	203119.Cthe_2464	97.1	7.9e-23	Bacteriophage Mu Gam like protein	N/A
Pfam	UHGV-1365794_2	PF07352	N/A	N/A	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
structural_annotation	UHGV-1365794_2	PF07352	N/A	N/A	N/A	N/A
PHROG	UHGV-1365794_4	phrog_14367	44.4	0.00000000000097	N/A	unknown function
UniRef90	UHGV-1365794_4	UniRef90_R7M1P5	53.1	0.000000399	Peptidoglycan-binding lysin domain protein	N/A
eggNOG-mapper	UHGV-1365794_4	591001.Acfer_0127	50.4	0.000000819	LysM domain	N/A
Pfam	UHGV-1365794_4	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-1365794_4	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1365794_4	MF_02014,NF010723	N/A	N/A	N/A	N/A
KOfam	UHGV-1365794_6	K07729	52.5	0.000000000000011	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1365794_6	phrog_3	42.5	0.000000000025	transcriptional repressor	transcription regulation
UniRef90	UHGV-1365794_6	UniRef90_UPI0010329BC1	60.8	0.000000000091	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1365794_6	718252.FP2_16270	60.8	0.0000000000296	sequence-specific DNA binding	N/A
PADLOC	UHGV-1365794_6	retron_type_VI_hth_cluster2_1	48.1	0.00000000000035	N/A	Retron
Pfam	UHGV-1365794_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1365794_6	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1365794_6	PF12844,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1365794_7	K22300	54.9	0.000000000000002	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1365794_7	phrog_8	59.7	6.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1365794_7	UniRef90_K0B0U3	57.0	0.0000000184	Transcriptional regulator, XRE family	N/A
eggNOG-mapper	UHGV-1365794_7	1128398.Curi_c26480	57.0	0.00000000308	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-1365794_7	retron_type_VI_hth_cluster2_1	40.2	0.000000000069	N/A	Retron
Pfam	UHGV-1365794_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1365794_7	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-1365794_10	K06400	373.8	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1365794_10	phrog_95	359.0	0	integrase	integration and excision
UniRef90	UHGV-1365794_10	UniRef90_E8LBZ4	446.0	0	Resolvase, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-1365794_10	626939.HMPREF9443_00357	446.0	0	overlaps another CDS with the same product name	N/A
Pfam	UHGV-1365794_10	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1365794_10	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1365794_10	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1365794_10	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1365794_10	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365794_11	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1365794_12	phrog_16490	61.9	9.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-1365794_12	1408437.JNJN01000043_gene803	100.0	4.03e-23	N/A	N/A
UniRef90	UHGV-1365794_15	UniRef90_A0A316S6W0	98.6	2.07e-25	HTH luxR-type domain-containing protein	N/A
Pfam	UHGV-1365794_15	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-1365794_15	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-1365794_15	PF08281,MF_00245,NF001075,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1365794_18	1392502.JNIO01000008_gene1280	227.0	0	N/A	N/A
structural_annotation	UHGV-1365794_18	PF21277	N/A	N/A	N/A	N/A
PHROG	UHGV-1365794_20	phrog_4105	73.6	2.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-1365794_20	537013.CLOSTMETH_01753	50.8	0.000000834	N/A	N/A
PHROG	UHGV-1365794_21	phrog_10089	1623.4	0	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1365794_21	UniRef90_A0A010ZMB0	738.0	0	SNF2 family protein,Eco57I restriction endonuclease	N/A
eggNOG-mapper	UHGV-1365794_21	278957.ABEA03000004_gene4552	1135.0	0	DEAD-like helicases superfamily	N/A
PADLOC	UHGV-1365794_21	DrmD_00004	41.8	0.000000000015	DrmD	DISARM
Pfam	UHGV-1365794_21	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1365794_21	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
Pfam	UHGV-1365794_21	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
Pfam	UHGV-1365794_21	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-1365794_21	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
UniRef90	UHGV-1365794_23	UniRef90_A0A1G6NNF8	150.0	1.81e-39	Intein N-terminal splicing region	N/A
eggNOG-mapper	UHGV-1365794_23	1232428.CAVO010000067_gene416	166.0	0	N/A	N/A
structural_annotation	UHGV-1365794_24	PF00765,MF_02210,NF007644,COG2153	N/A	N/A	N/A	N/A
UniRef90	UHGV-1365794_26	UniRef90_A9I964	91.7	1.41e-20	Putative phage tail fibre protein	N/A
eggNOG-mapper	UHGV-1365794_26	443152.MDG893_20534	97.4	4.13e-24	N/A	N/A
UniRef90	UHGV-1365794_27	UniRef90_A0A1G6NQ88	231.0	0	N/A	N/A
eggNOG-mapper	UHGV-1365794_27	1321782.HMPREF1986_02279	229.0	0	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-1365794_28	phrog_697	44.1	0.00000000000075	structural protein	head and packaging
eggNOG-mapper	UHGV-1365794_28	382359.Q0QZC0_BPSYS	58.9	0.00000000638	N/A	N/A
PHROG	UHGV-1365794_29	phrog_2824	80.2	1.3e-23	virion structural protein	head and packaging
UniRef90	UHGV-1365794_29	UniRef90_A0A1G9QWJ9	213.0	0	Mtd_N domain-containing protein	N/A
eggNOG-mapper	UHGV-1365794_29	696281.Desru_3489	159.0	6.44597e-44	exo-alpha-(2->6)-sialidase activity	N/A
COG	UHGV-1365794_29	COG4409	N/A	N/A	Neuraminidase (sialidase) NanH, contains C-terminal autotransporter domain	N/A
structural_annotation	UHGV-1365794_29	PF18454	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1365794_31	428125.CLOLEP_01432	57.0	0.00000000486	N/A	N/A
structural_annotation	UHGV-1365794_31	PF16407,NF032891,COG5456	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1365794_33	1123288.SOV_4c02720	137.0	1.42e-32	N/A	N/A
structural_annotation	UHGV-1365794_33	PF11134,MF_00923,NF000022,COG4257	N/A	N/A	N/A	N/A
PHROG	UHGV-1365794_34	phrog_399	40.7	0.000000000016	structural protein	head and packaging
structural_annotation	UHGV-1365794_34	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-1365794_35	phrog_334	291.8	0	major head protein	head and packaging
UniRef90	UHGV-1365794_35	UniRef90_A0A316SB53	417.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1365794_35	401526.TcarDRAFT_1286	304.0	0	N/A	N/A
Pfam	UHGV-1365794_35	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1365794_35	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1365794_35	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1365794_38	phrog_156	432.0	0	portal protein	head and packaging
UniRef90	UHGV-1365794_38	UniRef90_F7NK66	495.0	0	Putative phage portal protein	N/A
eggNOG-mapper	UHGV-1365794_38	401526.TcarDRAFT_1284	528.0	0	Tfp pilus assembly protein FimV	N/A
COG	UHGV-1365794_38	COG3170	N/A	N/A	Type IV pilus assembly protein FimV	N/A
structural_annotation	UHGV-1365794_38	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
Pfam	UHGV-1365794_39	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-1365794_39	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
KOfam	UHGV-1365794_40	K06909	263.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1365794_40	phrog_3717	243.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1365794_40	UniRef90_A0A316S7L1	751.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1365794_40	1009370.ALO_12436	580.0	0	Phage terminase, large subunit	N/A
Pfam	UHGV-1365794_40	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-1365794_40	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1365794_40	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1365794_40	PF04466,PF20454,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1365794_41	K07474	68.9	1e-19	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1365794_41	phrog_51	63.8	1e-19	terminase small subunit	head and packaging
UniRef90	UHGV-1365794_41	UniRef90_A0A373MWB9	80.1	7.13e-16	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1365794_41	1391647.AVSV01000003_gene1801	67.8	0.00000000000464	Terminase small subunit	N/A
Pfam	UHGV-1365794_41	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1365794_41	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1365794_41	PF03592,COG3728	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1365794_42	1280689.AUJC01000003_gene960	52.4	0.000000193	N/A	N/A
eggNOG-mapper	UHGV-1365794_47	401526.TcarDRAFT_1279	82.4	6.88e-18	phage transcriptional regulator, RinA family	N/A
structural_annotation	UHGV-1365794_47	PF05263,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-1365794_48	phrog_16126	69.4	1.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-1365794_48	397290.C810_01370	55.8	0.0000000179	N/A	N/A
KOfam	UHGV-1365794_49	K03111	143.3	2.29953e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1365794_49	phrog_44	146.8	1.09301e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365794_49	UniRef90_A0A3G9HAR8	179.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1365794_49	1262914.BN533_00181	179.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1365794_49	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1365794_49	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1365794_49	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1365794_49	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1365794_49	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365794_50	PF19607	N/A	N/A	N/A	N/A
UniRef90	UHGV-1365794_54	UniRef90_A0A6N7WVF3	53.1	0.00000353	Restriction endonuclease subunit S	N/A
structural_annotation	UHGV-1365794_55	PF11998	N/A	N/A	N/A	N/A
PHROG	UHGV-1365794_56	phrog_799	202.1	0	DNA methyltransferase	other
UniRef90	UHGV-1365794_56	UniRef90_UPI001981B522	272.0	0	NAD(P)-dependent oxidoreductase	N/A
eggNOG-mapper	UHGV-1365794_56	1236504.HMPREF2132_11055	251.0	0	DNA restriction-modification system	N/A
COG	UHGV-1365794_56	COG0827	N/A	N/A	Adenine-specific DNA N6-methylase	N/A
structural_annotation	UHGV-1365794_56	PF19587,MF_01872,NF011489,COG0286	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1365794_57	1327970.R9ZZC1_9CAUD	47.0	0.00000194	N/A	N/A
PHROG	UHGV-1365794_58	phrog_1997	43.5	0.0000000000038	N/A	unknown function
PHROG	UHGV-1365794_59	phrog_236	95.8	5.6e-28	nucleotide kinase	other
UniRef90	UHGV-1365794_59	UniRef90_UPI001C8AB7CA	75.1	0.000000000000101	N/A	N/A
eggNOG-mapper	UHGV-1365794_59	1033743.CAES01000020_gene3148	88.2	2.59e-20	N/A	N/A
Pfam	UHGV-1365794_59	PF11753	N/A	N/A	N/A	DUF3310
PHROG	UHGV-1365794_61	phrog_9298	385.8	0	radical SAM domain protein	other
UniRef90	UHGV-1365794_61	UniRef90_UPI001EE0FE88	404.0	0	radical SAM protein	N/A
eggNOG-mapper	UHGV-1365794_61	755731.Clo1100_1144	348.0	0	N/A	N/A
COG	UHGV-1365794_61	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-1365794_61	MF_01864,NF010916,COG2516	N/A	N/A	N/A	N/A
KOfam	UHGV-1365794_63	K00558	63.9	1.7e-18	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1365794_63	phrog_16427	90.6	8e-28	DNA methyltransferase	other
UniRef90	UHGV-1365794_63	UniRef90_UPI0003748816	103.0	1.55e-23	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1365794_63	910314.HMPREF9220_1103	127.0	1.24e-32	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1365794_63	MTase_II_00058	60.6	5.1e-17	Type II methyltransferase	RM
Pfam	UHGV-1365794_63	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1365794_63	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-1365794_64	K00558	78.6	5e-23	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1365794_64	phrog_116	82.0	2.9e-24	DNA methyltransferase	other
UniRef90	UHGV-1365794_64	UniRef90_UPI001CA54BD5	125.0	7.94e-35	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1365794_64	1582154.A0A0A8WFL3_9CAUD	160.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1365794_64	MTase_II_00058	87.9	2.2e-25	Type II methyltransferase	RM
Pfam	UHGV-1365794_64	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
KOfam	UHGV-1365794_65	K00558	66.0	4e-19	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1365794_65	phrog_5999	87.3	1.2e-25	DNA methyltransferase	other
UniRef90	UHGV-1365794_65	UniRef90_A0A5Q2P655	114.0	3.5e-31	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1365794_65	411470.RUMGNA_02336	114.0	2.75e-29	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1365794_65	MTase_II_00072	87.7	2.6e-25	Type II methyltransferase	RM
Pfam	UHGV-1365794_65	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1365794_65	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1365794_65	PF02390,COG2242	N/A	N/A	N/A	N/A
PHROG	UHGV-1365794_67	phrog_11233	124.4	7.5e-37	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365794_67	UniRef90_A0A7D7IMU6	131.0	1.94e-32	Replication protein	N/A
eggNOG-mapper	UHGV-1365794_67	1193128.A200_01249	122.0	3.02e-29	N/A	N/A
COG	UHGV-1365794_67	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1365794_67	PF08679,MF_01911,NF033788,COG1733	N/A	N/A	N/A	N/A
PHROG	UHGV-1365794_68	phrog_72	59.3	5.4e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1365794_68	445972.ANACOL_01825	117.0	1.04e-30	N/A	N/A
structural_annotation	UHGV-1365794_68	PF05772,NF007281	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1365794	Yes	53,140	43	100	1