vOTU vOTU-055862

vOTU: vOTU-055862

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-055862
Number of genomes	22
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00138 → vSUBFAM-04166 → vGENUS-06852 → vSUBGEN-37787 → vOTU-055862
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Absicoccus → Absicoccus sp000434355
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1365928
Biosample ID	SAMEA3708561
Genome length (bp)	49,525 bps
CheckV completeness	100.00% (Complete)
CDS count	74
CDS density	88.48%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Absicoccus → Absicoccus sp000434355	Total connections	89	Host agreement	84.27
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1365928_1	phrog_24267	85.6	5.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-1365928_1	1235796.C815_00905	122.0	5.68e-28	N/A	N/A
Pfam	UHGV-1365928_1	PF11133	N/A	N/A	Head fiber protein	Phage_head_fibr
PHROG	UHGV-1365928_2	phrog_443	57.3	4.3e-16	holin	lysis
UniRef90	UHGV-1365928_2	UniRef90_UPI001C38BFA7	92.4	3.09e-23	holin	N/A
eggNOG-mapper	UHGV-1365928_2	1321814.HMPREF9089_00942	76.3	1.61e-17	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1365928_2	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1365928_2	PF16945	N/A	N/A	N/A	N/A
UniRef90	UHGV-1365928_3	UniRef90_UPI001E4D989F	58.9	0.00000000857	CTP synthase	N/A
KOfam	UHGV-1365928_4	K07273	126.5	3e-37	acm; lysozyme	N/A
PHROG	UHGV-1365928_4	phrog_291	115.8	5.3e-34	endolysin	lysis
UniRef90	UHGV-1365928_4	UniRef90_UPI001C395B9C	432.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1365928_4	888821.HMPREF9394_1026	119.0	4.95e-27	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1365928_4	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-1365928_4	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1365928_4	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1365928_4	PF01183,PF08460,PF00877,NF040675,COG3757	N/A	N/A	N/A	N/A
KOfam	UHGV-1365928_5	K14059	181.3	0	int; integrase	N/A
PHROG	UHGV-1365928_5	phrog_1	182.5	0	integrase	integration and excision
UniRef90	UHGV-1365928_5	UniRef90_A0A1Y4SVX2	291.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1365928_5	1123313.ATUT01000024_gene585	289.0	0	Pfam:Integrase_AP2	N/A
Pfam	UHGV-1365928_5	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-1365928_5	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1365928_5	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1365928_5	PF00589,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
Pfam	UHGV-1365928_6	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
Pfam	UHGV-1365928_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1365928_7	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
Pfam	UHGV-1365928_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1365928_8	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
PHROG	UHGV-1365928_12	phrog_155	135.1	4.2e-40	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365928_12	UniRef90_A0A6N2YYW1	174.0	0	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-1365928_12	500633.CLOHIR_01419	151.0	8.88423e-43	ERF superfamily	N/A
Pfam	UHGV-1365928_12	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1365928_12	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1365928_13	phrog_6244	66.0	7.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-1365928_13	508419.F8J183_9CAUD	55.1	0.0000000234	N/A	N/A
structural_annotation	UHGV-1365928_13	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1365928_14	phrog_398	172.3	0	N/A	unknown function
UniRef90	UHGV-1365928_14	UniRef90_UPI000C34ECE4	121.0	1.84e-30	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-1365928_14	129009.Q9MBS0_9CAUD	116.0	3.74e-29	Pfam:HNHc_6	N/A
Pfam	UHGV-1365928_14	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-1365928_14	PF16784	N/A	N/A	N/A	N/A
KOfam	UHGV-1365928_15	K01160	50.8	0.000000000000046	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1365928_15	phrog_34	43.4	0.000000000006	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365928_15	UniRef90_A0A1I3C3C7	119.0	5.54e-32	Holliday junction resolvase RusA (Prophage-encoded endonuclease)	N/A
eggNOG-mapper	UHGV-1365928_15	525919.Apre_0813	114.0	4.08e-31	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1365928_15	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1365928_15	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1365928_15	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1365928_16	phrog_4707	79.1	3.4e-23	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365928_16	UniRef90_UPI0011C364A6	125.0	1.86e-31	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1365928_16	1235800.C819_03774	110.0	4.57e-26	N/A	N/A
Pfam	UHGV-1365928_16	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-1365928_16	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1365928_16	PF04182,NF040939,COG3355	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365928_23	PF01104,NF041014	N/A	N/A	N/A	N/A
KOfam	UHGV-1365928_31	K03111	133.0	3.2e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1365928_31	phrog_44	150.6	5.60519e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1365928_31	UniRef90_A0A3N0HZS0	169.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1365928_31	1123313.ATUT01000010_gene1556	154.0	1.4013e-45	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1365928_31	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1365928_31	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1365928_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1365928_31	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1365928_31	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1365928_39	PF09392,NF011854	N/A	N/A	N/A	N/A
UniRef90	UHGV-1365928_45	UniRef90_A0A2V2D213	55.5	0.00000305	Immunogenic protein	N/A
PHROG	UHGV-1365928_48	phrog_2	41.9	0.000000000015	terminase large subunit	head and packaging
UniRef90	UHGV-1365928_48	UniRef90_UPI0018C9F0A1	259.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1365928_48	1158607.UAU_05156	61.2	0.000000433	Terminase RNAseH like domain	N/A
COG	UHGV-1365928_48	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1365928_48	PF20441,PF04466,MF_04148,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-1365928_49	phrog_16496	242.4	0	portal protein	head and packaging
UniRef90	UHGV-1365928_49	UniRef90_UPI00115E0FBB	264.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1365928_49	226185.EF_2111	284.0	0	N/A	N/A
PHROG	UHGV-1365928_50	phrog_37970	51.3	0.000000000000021	N/A	unknown function
PHROG	UHGV-1365928_54	phrog_37716	105.6	3.4e-31	N/A	unknown function
structural_annotation	UHGV-1365928_54	PF05929,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1365928_55	phrog_37094	281.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1365928_55	226185.EF_2104	279.0	0	N/A	N/A
structural_annotation	UHGV-1365928_55	PF05065,MF_04133,NF033394,COG1659	N/A	N/A	N/A	N/A
PHROG	UHGV-1365928_56	phrog_16343	141.5	5.5001e-42	head-tail adaptor	connector
PHROG	UHGV-1365928_60	phrog_14985	239.4	0	virion structural protein	head and packaging
UniRef90	UHGV-1365928_60	UniRef90_C7D2C1	235.0	0	Predicted protein	N/A
eggNOG-mapper	UHGV-1365928_60	1158612.I580_02499	285.0	0	N/A	N/A
structural_annotation	UHGV-1365928_60	PF21582,NF033675	N/A	N/A	N/A	N/A
PHROG	UHGV-1365928_61	phrog_37229	59.8	2.3e-18	N/A	unknown function
eggNOG-mapper	UHGV-1365928_61	1158612.I580_02498	84.0	2.52e-17	N/A	N/A
PHROG	UHGV-1365928_62	phrog_36722	56.3	5.3e-16	N/A	unknown function
eggNOG-mapper	UHGV-1365928_62	1158608.I583_02866	73.6	2.28e-16	N/A	N/A
PHROG	UHGV-1365928_63	phrog_35723	140.4	0	N/A	unknown function
UniRef90	UHGV-1365928_63	UniRef90_A0A1Y4LYM7	211.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1365928_63	1201292.DR75_1503	159.0	1.37e-36	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-1365928_63	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1365928_63	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1365928_63	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-1365928_64	phrog_16596	232.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1365928_64	1158608.I583_02860	255.0	0	N/A	N/A
structural_annotation	UHGV-1365928_64	PF20753,PF21821,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1365928_65	phrog_35125	72.8	8.8e-32	N/A	unknown function
UniRef90	UHGV-1365928_65	UniRef90_A0A1Y4LYK4	241.0	0	BspA_v domain-containing protein	N/A
eggNOG-mapper	UHGV-1365928_65	1158609.I586_02616	152.0	2.81002e-41	N/A	N/A
Pfam	UHGV-1365928_65	PF18220	N/A	N/A	Adhesin BspA variable domain	BspA_v
structural_annotation	UHGV-1365928_65	PF18220	N/A	N/A	N/A	N/A
PHROG	UHGV-1365928_66	phrog_17155	56.0	4.6e-16	N/A	unknown function
UniRef90	UHGV-1365928_66	UniRef90_A0A242K249	97.8	6.58e-21	BspA_v domain-containing protein	N/A
eggNOG-mapper	UHGV-1365928_66	1158608.I583_02859	96.3	4.09e-21	N/A	N/A
PHROG	UHGV-1365928_67	phrog_7782	73.8	2.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-1365928_67	1158609.I586_02614	65.5	0.000000000776	N/A	N/A
structural_annotation	UHGV-1365928_67	PF16578	N/A	N/A	N/A	N/A
PHROG	UHGV-1365928_68	phrog_35693	225.2	0	N/A	unknown function
UniRef90	UHGV-1365928_68	UniRef90_A0A1Y4M4P3	469.0	0	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-1365928_68	1158608.I583_02855	261.0	0	Bacteriophage peptidoglycan hydrolase	N/A
Pfam	UHGV-1365928_68	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-1365928_68	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-1365928_68	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
PHROG	UHGV-1365928_69	phrog_24935	67.4	2e-19	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1365928_69	1158609.I586_02612	92.4	8.14e-21	N/A	N/A
PHROG	UHGV-1365928_71	phrog_15722	181.7	0	N/A	unknown function
eggNOG-mapper	UHGV-1365928_71	1158612.I580_02486	199.0	0	N/A	N/A
PHROG	UHGV-1365928_72	phrog_17147	203.9	0	N/A	unknown function
UniRef90	UHGV-1365928_72	UniRef90_A0A374JQW7	308.0	0	N/A	N/A
eggNOG-mapper	UHGV-1365928_74	1273103.NM10_08089	53.1	0.00000835	tail collar domain protein	N/A
Pfam	UHGV-1365928_74	PF11133	N/A	N/A	Head fiber protein	Phage_head_fibr
COG	UHGV-1365928_74	COG4675	N/A	N/A	Phage tail collar domain	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1365928	Yes	49,525	33	100	1
UHGV-1456959	No	46,333	33	94	1
UHGV-0080815	No	46,253	33	93	1
UHGV-1454910	No	46,253	33	93	1
UHGV-1493721	No	45,346	33	92	1
UHGV-1498442	No	45,333	34	92	1
UHGV-1417959	No	45,019	34	91	1
UHGV-0058611	No	42,130	34	85	1
UHGV-1392243	No	42,130	34	85	1
UHGV-1484253	No	38,199	33	77	1
UHGV-1436762	No	37,708	34	76	1
UHGV-1462196	No	34,550	34	70	1
UHGV-1454730	No	34,406	33	69	1
UHGV-1425245	No	34,172	34	69	1
UHGV-0060709	No	32,781	34	66	1
UHGV-1423336	No	32,781	34	66	1
UHGV-1638582	No	22,671	35	46	1
UHGV-1785878	No	20,747	34	42	1
UHGV-1656259	No	18,478	35	37	1
UHGV-1635738	No	15,463	34	31	1
UHGV-1700598	No	14,688	35	30	1
UHGV-1708798	No	10,318	35	21	1