vOTU vOTU-055888

vOTU: vOTU-055888

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-055888
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00478 → vGENUS-00461 → vSUBGEN-20656 → vOTU-055888
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Dysosmobacter → Dysosmobacter sp001916835
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1366056
Biosample ID	SAMEA3182070
Genome length (bp)	40,693 bps
CheckV completeness	100.00% (Complete)
CDS count	62
CDS density	95.43%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Dysosmobacter → Dysosmobacter sp001916835	Total connections	32	Host agreement	84.38
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1366056_1	K08640	89.1	7.5e-26	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1366056_1	phrog_18955	150.4	8.40779e-45	N/A	unknown function
UniRef90	UHGV-1366056_1	UniRef90_UPI001C035E39	602.0	0	D-Ala-D-Ala carboxypeptidase family metallohydrolase	N/A
eggNOG-mapper	UHGV-1366056_1	1235797.C816_04171	324.0	0	Peptidase M15	N/A
Pfam	UHGV-1366056_1	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-1366056_1	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-1366056_1	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1366056_1	PF09992,PF08291,COG4632,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-1366056_2	phrog_199	92.4	4.3e-27	holin	lysis
UniRef90	UHGV-1366056_2	UniRef90_K1UL76	280.0	0	Holin, toxin secretion/phage lysis	N/A
eggNOG-mapper	UHGV-1366056_2	411467.BACCAP_00280	141.0	7.20996e-41	Bacteriophage holin family	N/A
Pfam	UHGV-1366056_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1366056_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1366056_2	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1366056_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1366056_4	phrog_10993	224.9	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-1366056_4	UniRef90_K1UI43	351.0	0	N/A	N/A
eggNOG-mapper	UHGV-1366056_4	718252.FP2_16970	225.0	0	N/A	N/A
Pfam	UHGV-1366056_4	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1366056_4	PF19789	N/A	N/A	N/A	N/A
COG	UHGV-1366056_5	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1366056_5	PF20328,TIGR04362	N/A	N/A	N/A	N/A
PHROG	UHGV-1366056_6	phrog_10993	187.2	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-1366056_6	UniRef90_K1UI43	288.0	0	N/A	N/A
eggNOG-mapper	UHGV-1366056_6	1121334.KB911071_gene1970	204.0	0	N/A	N/A
Pfam	UHGV-1366056_6	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-1366056_6	PF19789	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1366056_7	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1366056_9	phrog_1357	271.2	0	major head protein	head and packaging
UniRef90	UHGV-1366056_9	UniRef90_UPI001D02EBA7	468.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1366056_9	1203606.HMPREF1526_02746	360.0	0	N/A	N/A
Pfam	UHGV-1366056_9	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1366056_9	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1366056_9	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1366056_10	phrog_13908	242.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1366056_10	1410650.JHWL01000003_gene2831	102.0	3.06e-22	N/A	N/A
KOfam	UHGV-1366056_11	K07584	55.4	7.5e-16	N/A	N/A
PHROG	UHGV-1366056_11	phrog_4478	46.9	0.00000000000017	peptidase	other
UniRef90	UHGV-1366056_11	UniRef90_UPI001956F6CB	60.8	0.0000000011	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-1366056_11	1304880.JAGB01000002_gene2061	62.4	0.0000000000465	Cysteine protease Prp	N/A
Pfam	UHGV-1366056_11	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-1366056_11	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1366056_11	PF04327,NF011125,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1366056_12	phrog_156	320.0	0	portal protein	head and packaging
UniRef90	UHGV-1366056_12	UniRef90_A0A8D9UH10	619.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1366056_12	748224.HMPREF9436_02547	504.0	0	N/A	N/A
structural_annotation	UHGV-1366056_12	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-1366056_13	K06909	98.6	6.9e-29	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1366056_13	phrog_979	196.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1366056_13	UniRef90_UPI001BB47C17	800.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1366056_13	748224.HMPREF9436_01395	630.0	0	Terminase-like family	N/A
Pfam	UHGV-1366056_13	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1366056_13	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1366056_13	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1366056_14	phrog_606	82.3	5.8e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1366056_14	UniRef90_UPI00195648BB	167.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1366056_14	445972.ANACOL_01838	135.0	7.05e-39	DNA-packaging protein gp3	N/A
Pfam	UHGV-1366056_14	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1366056_14	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-1366056_15	K22300	48.1	0.00000000000024	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1366056_15	phrog_8	66.4	6.7e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-1366056_15	UniRef90_A0A8D9PDC4	122.0	5.11e-35	Repressor protein	N/A
eggNOG-mapper	UHGV-1366056_15	351627.Csac_2097	60.8	0.000000000381	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-1366056_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1366056_15	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1366056_15	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1366056_16	K02647	55.9	5.3e-16	cdaR; carbohydrate diacid regulator	N/A
UniRef90	UHGV-1366056_16	UniRef90_UPI00164DE10C	59.3	0.000000000304	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1366056_16	411459.RUMOBE_03347	53.5	0.000000192	PucR C-terminal helix-turn-helix domain	N/A
Pfam	UHGV-1366056_16	PF13556	N/A	N/A	PucR C-terminal helix-turn-helix domain	HTH_30
COG	UHGV-1366056_16	COG3835	N/A	N/A	Sugar diacid utilization regulator CdaR	N/A
structural_annotation	UHGV-1366056_16	PF13556,COG2771	N/A	N/A	N/A	N/A
UniRef90	UHGV-1366056_21	UniRef90_A0A8D9PDT5	55.5	0.0000000993	Hydrogenase/urease nickel incorporation protein	N/A
PHROG	UHGV-1366056_23	phrog_599	43.3	0.0000000000073	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-1366056_23	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1366056_23	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-1366056_23	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1366056_23	PF14354,TIGR03655,COG4888	N/A	N/A	N/A	N/A
PHROG	UHGV-1366056_24	phrog_38832	80.4	1.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-1366056_24	665956.HMPREF1032_03087	78.6	2.54e-16	N/A	N/A
structural_annotation	UHGV-1366056_26	PF06657	N/A	N/A	N/A	N/A
PHROG	UHGV-1366056_29	phrog_954	191.5	0	DNA methyltransferase	other
UniRef90	UHGV-1366056_29	UniRef90_A0A810Q0N4	323.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1366056_29	1280698.AUJS01000007_gene1028	269.0	0	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	N/A
PADLOC	UHGV-1366056_29	MTase_II_00074	202.7	0	Type II methyltransferase	RM
Pfam	UHGV-1366056_29	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-1366056_29	COG1092	N/A	N/A	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	N/A
structural_annotation	UHGV-1366056_29	PF05148,MF_03044,NF033398,COG1041	N/A	N/A	N/A	N/A
PHROG	UHGV-1366056_30	phrog_474	103.4	3.5e-30	phosphofructokinase	other
UniRef90	UHGV-1366056_30	UniRef90_A0A1Q6KPW7	122.0	1.86e-34	N/A	N/A
eggNOG-mapper	UHGV-1366056_30	428125.CLOLEP_01367	114.0	4.95e-32	N/A	N/A
Pfam	UHGV-1366056_30	PF19905	N/A	N/A	N/A	DUF6378
PHROG	UHGV-1366056_32	phrog_37344	46.0	0.000000000001	N/A	unknown function
KOfam	UHGV-1366056_33	K01160	65.0	2e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1366056_33	phrog_140	119.6	2e-35	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366056_33	UniRef90_A0A7X9D805	114.0	3.7e-30	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1366056_33	1095750.HMPREF9970_1673	100.0	1.93e-25	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1366056_33	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1366056_33	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1366056_33	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1366056_34	phrog_111	163.7	0	DNA methyltransferase	other
UniRef90	UHGV-1366056_34	UniRef90_UPI000F065B6D	223.0	0	adenine methyltransferase	N/A
eggNOG-mapper	UHGV-1366056_34	760568.Desku_0784	192.0	0	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-1366056_34	oMTase_00015	186.0	0	orphan methyltransferase	RM
Pfam	UHGV-1366056_34	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-1366056_34	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-1366056_37	phrog_2149	67.4	2.4e-19	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366056_37	UniRef90_A0A417QFV0	104.0	1.67e-23	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1366056_37	742740.HMPREF9474_03117	181.0	0	N/A	N/A
structural_annotation	UHGV-1366056_37	PF01978,NF000243,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-1366056_38	K03111	143.0	3.00018e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1366056_38	phrog_44	142.7	2.10055e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366056_38	UniRef90_A0A1Q6RGI0	203.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1366056_38	1226322.HMPREF1545_04080	202.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1366056_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1366056_38	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1366056_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1366056_38	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1366056_38	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1366056_39	phrog_7370	58.6	9.3e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366056_39	UniRef90_UPI001C122365	134.0	1.25e-38	HNH endonuclease	N/A
Pfam	UHGV-1366056_39	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-1366056_40	phrog_72	69.3	5.1e-20	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366056_40	UniRef90_A0A8D9PDS2	177.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-1366056_40	445972.ANACOL_01825	152.0	1.26117e-44	N/A	N/A
structural_annotation	UHGV-1366056_40	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1366056_41	phrog_155	144.6	6.60012e-43	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366056_41	UniRef90_UPI001CF85C41	190.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1366056_41	748224.HMPREF9436_03360	171.0	0	ERF superfamily	N/A
Pfam	UHGV-1366056_41	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1366056_41	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1366056_43	phrog_4973	50.7	0.000000000000027	N/A	unknown function
UniRef90	UHGV-1366056_43	UniRef90_A0A3D3Y5F2	68.2	0.000000000000147	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1366056_43	935261.JAGL01000009_gene1175	47.8	0.0000024	Helix-turn-helix domain	N/A
Pfam	UHGV-1366056_43	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1366056_43	PF14090,MF_01586,TIGR00373,COG5625	N/A	N/A	N/A	N/A
Pfam	UHGV-1366056_45	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1366056_45	PF14354,TIGR03655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1366056_48	UniRef90_UPI001EDEB2FF	75.1	5.4e-16	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-1366056_48	PF13560,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1366056_50	phrog_2657	163.8	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-1366056_50	UniRef90_UPI0019674AC1	311.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1366056_50	411473.RUMCAL_02620	305.0	0	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-1366056_50	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-1366056_50	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-1366056_50	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-1366056_50	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-1366056_51	phrog_8	63.8	3.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1366056_51	UniRef90_A0A847W1V2	85.1	2.13e-20	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1366056_51	665950.HMPREF1025_02561	68.6	0.0000000000000102	sequence-specific DNA binding	N/A
Pfam	UHGV-1366056_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1366056_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1366056_51	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
Pfam	UHGV-1366056_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1366056_52	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1366056_52	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1366056_54	UniRef90_A0A8D9UHA6	84.3	1.73e-17	Helix-turn-helix XRE-family like protein	N/A
structural_annotation	UHGV-1366056_54	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1366056_55	K14059	169.7	0	int; integrase	N/A
PHROG	UHGV-1366056_55	phrog_1	161.3	0	integrase	integration and excision
UniRef90	UHGV-1366056_55	UniRef90_A0A174HFN7	353.0	0	Site-specific tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-1366056_55	1226322.HMPREF1545_00144	183.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1366056_55	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1366056_55	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1366056_55	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1366056_56	1408437.JNJN01000043_gene801	62.4	0.000000000147	N/A	N/A
UniRef90	UHGV-1366056_57	UniRef90_A0A8D9PDQ3	81.6	7.57e-19	ECF sigma factor	N/A
structural_annotation	UHGV-1366056_57	PF04545,MF_00674,NF009179,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-1366056_58	phrog_22978	1173.8	0	N/A	unknown function
UniRef90	UHGV-1366056_58	UniRef90_A0A2V2FDI6	372.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1366056_58	1410650.JHWL01000003_gene2814	314.0	0	N/A	N/A
Pfam	UHGV-1366056_58	PF13699	N/A	N/A	N/A	DUF4157
eggNOG-mapper	UHGV-1366056_59	1519439.JPJG01000060_gene1904	98.6	5.99e-19	N/A	N/A
Pfam	UHGV-1366056_60	PF07889	N/A	N/A	N/A	DUF1664
PHROG	UHGV-1366056_61	phrog_511	234.7	0	internal virion protein	head and packaging
UniRef90	UHGV-1366056_61	UniRef90_A0A8D9UH72	538.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-1366056_61	1226322.HMPREF1545_00785	349.0	0	N/A	N/A
structural_annotation	UHGV-1366056_61	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-1366056_62	phrog_12105	105.6	2.9e-31	N/A	unknown function
eggNOG-mapper	UHGV-1366056_62	1226322.HMPREF1545_03850	70.1	0.0000000000000905	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1366056	Yes	40,693	55	100	1