vOTU vOTU-055914

vOTU: vOTU-055914

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-055914
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium prausnitzii_C
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00991 → vGENUS-03098 → vSUBGEN-27943 → vOTU-055914
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → HGM13006
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1366223
Biosample ID	N/A
Genome length (bp)	40,732 bps
CheckV completeness	100.00% (Complete)
CDS count	69
CDS density	89.79%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → HGM13006	Total connections	11	Host agreement	81.82
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium prausnitzii_C	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1366223_1	phrog_749	49.2	0.000000000000084	N/A	unknown function
UniRef90	UHGV-1366223_1	UniRef90_A0A4Z0H451	59.3	0.00000000119	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1366223_1	86416.Clopa_0342	57.8	0.000000000841	N/A	N/A
PHROG	UHGV-1366223_2	phrog_19734	67.3	2.4e-19	N/A	unknown function
eggNOG-mapper	UHGV-1366223_2	349161.Dred_2602	64.3	0.0000000000148	N/A	N/A
structural_annotation	UHGV-1366223_2	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1366223_3	PF05657,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1366223_4	phrog_5	41.8	0.000000000022	tail completion or Neck1 protein	connector
UniRef90	UHGV-1366223_4	UniRef90_R5IIS5	58.2	0.0000000378	HK97 gp10 family phage protein	N/A
structural_annotation	UHGV-1366223_4	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1366223_5	phrog_88	49.6	0.000000000000068	major tail protein	tail
COG	UHGV-1366223_5	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1366223_5	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
KOfam	UHGV-1366223_7	K19326	62.5	3.9e-20	SYNE1; nesprin-1	N/A
PHROG	UHGV-1366223_7	phrog_1533	373.3	0	tail length tape measure protein	tail
UniRef90	UHGV-1366223_7	UniRef90_A0A6N9P4L8	174.0	3.57e-40	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1366223_7	445972.ANACOL_00191	262.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-1366223_7	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1366223_7	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1366223_7	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1366223_7	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1366223_8	phrog_33	47.2	0.00000000000026	distal tail protein Dit	tail
eggNOG-mapper	UHGV-1366223_8	1118055.CAGU01000013_gene767	89.0	8.34e-18	N/A	N/A
structural_annotation	UHGV-1366223_8	PF05709,PF21621,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1366223_9	phrog_3558	372.1	0	tail protein	tail
UniRef90	UHGV-1366223_9	UniRef90_UPI001373F113	251.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-1366223_9	411465.PEPMIC_00746	216.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1366223_9	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1366223_9	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1366223_9	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1366223_9	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1366223_10	phrog_199	64.1	1.7e-18	holin	lysis
UniRef90	UHGV-1366223_10	UniRef90_A0A6G3M4V0	144.0	3.92994e-41	Holin	N/A
eggNOG-mapper	UHGV-1366223_10	742738.HMPREF9460_00365	135.0	2.67e-38	Bacteriophage holin family	N/A
Pfam	UHGV-1366223_10	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1366223_10	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1366223_10	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1366223_10	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1366223_11	K01447	82.1	8.8e-24	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1366223_11	phrog_1794	156.1	0	amidase	lysis
UniRef90	UHGV-1366223_11	UniRef90_A0A1Y4NYC1	245.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-1366223_11	573061.Clocel_3960	242.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1366223_11	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1366223_11	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
COG	UHGV-1366223_11	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1366223_11	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
UniRef90	UHGV-1366223_12	UniRef90_A0A350H2J1	48.9	0.00000404	HTH luxR-type domain-containing protein	N/A
structural_annotation	UHGV-1366223_12	PF13404,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1366223_13	phrog_25567	41.1	0.000000000024	N/A	unknown function
UniRef90	UHGV-1366223_13	UniRef90_UPI00164AED9E	97.8	4.3e-24	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1366223_13	1235798.C817_04600	60.1	0.000000000423	N/A	N/A
structural_annotation	UHGV-1366223_13	NF040522,COG2944	N/A	N/A	N/A	N/A
PHROG	UHGV-1366223_19	phrog_16490	67.4	2.9e-19	N/A	unknown function
structural_annotation	UHGV-1366223_20	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1366223_21	1408437.JNJN01000043_gene801	71.2	0.000000000000468	N/A	N/A
KOfam	UHGV-1366223_22	K06400	349.7	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1366223_22	phrog_95	343.7	0	integrase	integration and excision
UniRef90	UHGV-1366223_22	UniRef90_A0A3A6JR24	384.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1366223_22	665956.HMPREF1032_03589	385.0	0	N/A	N/A
Pfam	UHGV-1366223_22	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1366223_22	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1366223_22	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1366223_22	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1366223_22	PF00239,PF07508,PF15188,NF041201,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1366223_23	PF13560,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1366223_26	K22300	63.4	5.2e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1366223_26	phrog_4	47.7	0.00000000000034	transcriptional repressor	transcription regulation
UniRef90	UHGV-1366223_26	UniRef90_A0A1E7RXD7	105.0	6.88e-27	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-1366223_26	903814.ELI_1263	105.0	1.15e-27	Helix-turn-helix domain	N/A
Pfam	UHGV-1366223_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1366223_26	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1366223_26	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1366223_38	UniRef90_A0A098GES5	117.0	2.73e-31	Putative phage associated protein	N/A
PHROG	UHGV-1366223_40	phrog_38338	76.6	3.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-1366223_40	693746.OBV_25410	86.3	3.42e-20	N/A	N/A
structural_annotation	UHGV-1366223_42	PF04448,NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1366223_43	phrog_111	158.6	0	DNA methyltransferase	other
UniRef90	UHGV-1366223_43	UniRef90_A0A316S635	223.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-1366223_43	760568.Desku_0784	187.0	0	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-1366223_43	oMTase_00015	183.5	0	orphan methyltransferase	RM
Pfam	UHGV-1366223_43	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-1366223_43	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-1366223_44	phrog_1384	119.4	2.7e-35	Mom-like DNA modification protein	other
eggNOG-mapper	UHGV-1366223_44	665956.HMPREF1032_03086	290.0	0	COG NOG12663 non supervised orthologous group	N/A
structural_annotation	UHGV-1366223_44	PF11124,MF_02210,NF040502,COG3818	N/A	N/A	N/A	N/A
PHROG	UHGV-1366223_45	phrog_757	183.8	0	DNA methyltransferase	other
UniRef90	UHGV-1366223_45	UniRef90_A0A3E2U1Y9	275.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1366223_45	748224.HMPREF9436_03069	254.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1366223_45	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1366223_45	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-1366223_46	UniRef90_A0A8D9PDT5	67.4	0.00000000000273	Hydrogenase/urease nickel incorporation protein	N/A
KOfam	UHGV-1366223_48	K00571	101.7	9.3e-30	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1366223_48	phrog_23224	197.1	0	DNA methyltransferase	other
UniRef90	UHGV-1366223_48	UniRef90_A0A329TLK1	314.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1366223_48	718252.FP2_06750	306.0	0	DNA methylase	N/A
PADLOC	UHGV-1366223_48	MTase_II_00172	88.3	1.4e-27	Type II methyltransferase	RM
Pfam	UHGV-1366223_48	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1366223_48	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1366223_48	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-1366223_51	phrog_599	47.3	0.000000000000015	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-1366223_51	1235790.C805_00069	48.5	0.00000961	Restriction alleviation protein Lar	N/A
Pfam	UHGV-1366223_51	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1366223_51	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-1366223_51	PF14354,TIGR03655	N/A	N/A	N/A	N/A
KOfam	UHGV-1366223_52	K22299	45.2	0.0000000000019	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1366223_52	phrog_8	51.6	0.000000000000021	transcriptional regulator	transcription regulation
UniRef90	UHGV-1366223_52	UniRef90_UPI00085C123B	68.6	0.000000000000495	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1366223_52	1304880.JAGB01000001_gene917	60.8	0.0000000000762	PFAM Helix-turn-helix	N/A
Pfam	UHGV-1366223_52	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1366223_52	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1366223_52	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1366223_53	phrog_3584	137.8	7.30006e-41	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366223_53	UniRef90_UPI001AEBAF2C	74.3	0.000000000000765	replicative protein	N/A
eggNOG-mapper	UHGV-1366223_53	1519439.JPJG01000060_gene1883	120.0	4.22e-31	N/A	N/A
PHROG	UHGV-1366223_54	phrog_190	117.9	8.3e-35	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366223_54	UniRef90_A0A845R8D4	140.0	1.85e-39	N/A	N/A
eggNOG-mapper	UHGV-1366223_54	693746.OBV_25250	137.0	2.64e-39	N/A	N/A
Pfam	UHGV-1366223_54	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1366223_54	PF06356,NF033179	N/A	N/A	N/A	N/A
PHROG	UHGV-1366223_56	phrog_3584	217.0	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366223_56	UniRef90_I2E8X7	124.0	7.55e-31	Gp31	N/A
eggNOG-mapper	UHGV-1366223_56	1519439.JPJG01000060_gene1883	179.0	0	N/A	N/A
structural_annotation	UHGV-1366223_56	PF21578,NF033538	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1366223_61	PF08681	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1366223_62	PF08681	N/A	N/A	N/A	N/A
PHROG	UHGV-1366223_64	phrog_2059	96.9	2.7e-28	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1366223_64	UniRef90_A0A0P8Y8Z5	124.0	6.18e-32	Antirestriction protein (ArdA)	N/A
eggNOG-mapper	UHGV-1366223_64	1507.HMPREF0262_01754	122.0	7.15e-30	N/A	N/A
Pfam	UHGV-1366223_64	PF07275	N/A	N/A	Antirestriction protein (ArdA)	ArdA
dbAPIS	UHGV-1366223_64	APIS003	N/A	N/A	DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes.	N/A
COG	UHGV-1366223_64	COG2003	N/A	N/A	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	N/A
structural_annotation	UHGV-1366223_64	PF07275,COG4734	N/A	N/A	N/A	N/A
PHROG	UHGV-1366223_65	phrog_5110	63.0	2.9e-21	terminase small subunit	head and packaging
UniRef90	UHGV-1366223_65	UniRef90_A0A1G4FJQ3	57.4	0.000000137	Putative phage terminase, small subunit, P27 family	N/A
eggNOG-mapper	UHGV-1366223_65	1235792.C808_00082	52.8	0.00000122	N/A	N/A
Pfam	UHGV-1366223_65	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
PHROG	UHGV-1366223_66	phrog_9	297.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1366223_66	UniRef90_A0A1T4YES7	606.0	0	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
eggNOG-mapper	UHGV-1366223_66	86416.Clopa_0337	576.0	0	Phage Terminase	N/A
Pfam	UHGV-1366223_66	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1366223_66	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1366223_66	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1366223_66	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1366223_67	phrog_12	115.9	2.7e-34	portal protein	head and packaging
UniRef90	UHGV-1366223_67	UniRef90_A0A413HUL0	198.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1366223_67	1211817.CCAT010000053_gene2130	192.0	0	Phage portal protein	N/A
Pfam	UHGV-1366223_67	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1366223_67	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1366223_67	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-1366223_68	K01358	112.9	3.6e-33	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1366223_68	phrog_94	176.6	0	head maturation protease	head and packaging
UniRef90	UHGV-1366223_68	UniRef90_UPI00156EEE56	177.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-1366223_68	1232452.BAIB02000007_gene1626	155.0	4.62428e-44	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1366223_68	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1366223_68	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1366223_68	PF00574,MF_00444,NF009203,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1366223_69	phrog_10	116.7	2.3e-34	major head protein	head and packaging
UniRef90	UHGV-1366223_69	UniRef90_UPI00057E1B20	322.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1366223_69	1211817.CCAT010000053_gene2132	296.0	0	Phage capsid family	N/A
Pfam	UHGV-1366223_69	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1366223_69	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1366223_69	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1366223_69	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1366223	Yes	40,732	54	100	1
UHGV-0141205	No	31,105	55	76	1
UHGV-1405936	No	27,188	55	67	1