vOTU vOTU-055929

vOTU: vOTU-055929

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-055929
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00079 → vGENUS-00223 → vSUBGEN-20754 → vOTU-055929
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1366291
Biosample ID	SAMEA3646692
Genome length (bp)	40,774 bps
CheckV completeness	100.00% (Complete)
CDS count	69
CDS density	92.30%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	498	Host agreement	95.18
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	5	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1366291_1	phrog_4433	147.4	9.24857e-44	N/A	unknown function
UniRef90	UHGV-1366291_1	UniRef90_A0A6M5C839	108.0	7.64e-27	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-1366291_1	645991.Sgly_0315	128.0	6.3e-34	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1366291_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
eggNOG-mapper	UHGV-1366291_3	596152.DesU5LDRAFT_1910	86.7	2.88e-18	N/A	N/A
structural_annotation	UHGV-1366291_3	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
UniRef90	UHGV-1366291_5	UniRef90_A0A367GIH6	104.0	3.56e-27	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1366291_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1366291_5	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1366291_5	PF05339,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1366291_6	UniRef90_A0A8D9PDN2	84.0	4.55e-20	DNA-binding protein	N/A
structural_annotation	UHGV-1366291_6	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1366291_7	phrog_8	51.0	0.000000000000033	transcriptional regulator	transcription regulation
UniRef90	UHGV-1366291_7	UniRef90_UPI001966F1BB	81.3	3.2e-17	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-1366291_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1366291_7	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
eggNOG-mapper	UHGV-1366291_8	1280664.AUIX01000005_gene2823	53.9	0.00000298	N/A	N/A
structural_annotation	UHGV-1366291_10	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1366291_11	K14059	162.0	0	int; integrase	N/A
PHROG	UHGV-1366291_11	phrog_1	157.6	0	integrase	integration and excision
UniRef90	UHGV-1366291_11	UniRef90_A0A1Y4T0F9	348.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1366291_11	748224.HMPREF9436_03382	271.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1366291_11	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1366291_11	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1366291_11	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1366291_13	1226322.HMPREF1545_00079	70.1	0.000000000000057	N/A	N/A
structural_annotation	UHGV-1366291_14	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-1366291_15	phrog_20016	206.4	0	N/A	unknown function
UniRef90	UHGV-1366291_15	UniRef90_A0A285PT46	208.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1366291_15	1226322.HMPREF1545_00077	180.0	0	N/A	N/A
structural_annotation	UHGV-1366291_15	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1366291_16	phrog_16490	181.6	0	N/A	unknown function
eggNOG-mapper	UHGV-1366291_16	1408437.JNJN01000043_gene803	80.1	0.00000000000000415	N/A	N/A
PHROG	UHGV-1366291_17	phrog_22984	78.5	2.7e-24	N/A	unknown function
PHROG	UHGV-1366291_18	phrog_21718	119.7	1.8e-35	N/A	unknown function
eggNOG-mapper	UHGV-1366291_18	397290.C810_05210	100.0	9.79e-25	N/A	N/A
PHROG	UHGV-1366291_19	phrog_3754	95.1	7.4e-28	N/A	unknown function
eggNOG-mapper	UHGV-1366291_19	476272.RUMHYD_01764	149.0	7.00649e-45	N/A	N/A
KOfam	UHGV-1366291_20	K07684	42.8	0.0000000000092	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	N/A
Pfam	UHGV-1366291_20	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-1366291_20	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
PHROG	UHGV-1366291_21	phrog_13256	50.8	0.00000000000002	N/A	unknown function
eggNOG-mapper	UHGV-1366291_21	1226322.HMPREF1545_00166	53.5	0.000000015	N/A	N/A
eggNOG-mapper	UHGV-1366291_22	33035.JPJF01000090_gene94	61.6	0.0000000000431	N/A	N/A
KOfam	UHGV-1366291_23	K07273	133.0	3e-39	acm; lysozyme	N/A
PHROG	UHGV-1366291_23	phrog_291	103.2	2.3e-30	endolysin	lysis
UniRef90	UHGV-1366291_23	UniRef90_A0A1Q6T343	748.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-1366291_23	411471.SUBVAR_05145	244.0	0	heme binding	N/A
Pfam	UHGV-1366291_23	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
Pfam	UHGV-1366291_23	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1366291_23	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-1366291_23	PF01551,PF01183,NF040883,COG0739,COG3757	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1366291_25	PF16640	N/A	N/A	N/A	N/A
PHROG	UHGV-1366291_26	phrog_9534	127.0	1.7e-37	head protein	head and packaging
eggNOG-mapper	UHGV-1366291_26	864178.E2ELJ8_9CAUD	95.1	6.02e-19	cell adhesion	N/A
structural_annotation	UHGV-1366291_26	PF18463,PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-1366291_27	phrog_538	108.9	4.5e-32	minor tail protein	tail
eggNOG-mapper	UHGV-1366291_27	665956.HMPREF1032_02940	91.7	6.12e-18	N/A	N/A
Pfam	UHGV-1366291_27	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-1366291_27	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1366291_28	phrog_33	53.2	0.0000000000000067	distal tail protein Dit	tail
UniRef90	UHGV-1366291_28	UniRef90_UPI001C0FCFFA	262.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-1366291_28	1033737.CAEV01000029_gene285	96.7	1.39e-20	Phage tail protein	N/A
COG	UHGV-1366291_28	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1366291_28	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1366291_29	phrog_6900	224.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1366291_29	UniRef90_A0A0D0SGC8	325.0	0	Phage minor tail protein	N/A
eggNOG-mapper	UHGV-1366291_29	1437608.BBIA_2554	291.0	0	phage tail tape measure protein	N/A
COG	UHGV-1366291_29	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1366291_29	PF20155,MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1366291_30	phrog_20920	99.4	2.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-1366291_30	1121335.Clst_0399	99.4	2.48e-25	N/A	N/A
structural_annotation	UHGV-1366291_30	PF16674	N/A	N/A	N/A	N/A
PHROG	UHGV-1366291_32	phrog_18646	53.0	0.0000000000000052	N/A	unknown function
PHROG	UHGV-1366291_33	phrog_885	76.3	3.3e-22	major tail protein	tail
UniRef90	UHGV-1366291_33	UniRef90_A0A843J9F0	185.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1366291_33	1504822.CCNO01000012_gene492	218.0	0	N/A	N/A
structural_annotation	UHGV-1366291_33	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1366291_34	phrog_17405	40.1	0.000000000055	head protein	head and packaging
structural_annotation	UHGV-1366291_34	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1366291_35	phrog_17977	87.1	1.2e-25	N/A	unknown function
UniRef90	UHGV-1366291_35	UniRef90_A0A285PT57	91.3	2.07e-21	Phage head-tail joining protein	N/A
structural_annotation	UHGV-1366291_35	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1366291_37	phrog_544	119.8	2.5e-35	major head protein	head and packaging
UniRef90	UHGV-1366291_37	UniRef90_A0A1C6B5R0	335.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1366291_37	476272.RUMHYD_01776	315.0	0	N/A	N/A
structural_annotation	UHGV-1366291_37	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1366291_38	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1366291_39	phrog_478	127.5	5.5e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1366291_39	UniRef90_R6E548	167.0	0	Prophage pi1 protein 29	N/A
eggNOG-mapper	UHGV-1366291_39	1111121.HMPREF1247_0834	95.1	2.4e-23	N/A	N/A
PHROG	UHGV-1366291_40	phrog_5	75.9	7.8e-22	tail completion or Neck1 protein	connector
UniRef90	UHGV-1366291_40	UniRef90_A0A3A9EIF3	193.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1366291_40	1443125.Z962_05620	95.9	1.25e-23	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-1366291_40	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1366291_40	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1366291_40	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1366291_42	phrog_595	117.1	2.3e-34	head maturation protease	head and packaging
UniRef90	UHGV-1366291_42	UniRef90_A0A810PSD3	453.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1366291_42	1504822.CCNO01000013_gene286	172.0	5.32493e-44	cell adhesion	N/A
Pfam	UHGV-1366291_42	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1366291_42	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1366291_42	PF06152,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1366291_44	phrog_8680	235.7	0	N/A	unknown function
UniRef90	UHGV-1366291_44	UniRef90_UPI00189ACAD3	312.0	0	N/A	N/A
eggNOG-mapper	UHGV-1366291_44	411470.RUMGNA_02208	221.0	0	N/A	N/A
Pfam	UHGV-1366291_44	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-1366291_44	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-1366291_45	phrog_64	168.6	0	portal protein	head and packaging
UniRef90	UHGV-1366291_45	UniRef90_UPI0018A8A301	609.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1366291_45	673376.F2VHW1_9CAUD	215.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1366291_45	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1366291_45	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1366291_46	K06909	398.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1366291_46	phrog_3717	160.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1366291_46	UniRef90_UPI001C3B9235	627.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1366291_46	411471.SUBVAR_06507	570.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1366291_46	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1366291_46	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1366291_46	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1366291_46	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1366291_46	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1366291_47	phrog_606	80.3	2.6e-23	terminase small subunit	head and packaging
UniRef90	UHGV-1366291_47	UniRef90_UPI00195648BB	160.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1366291_47	397290.C810_05185	138.0	5.23e-40	DNA-packaging protein gp3	N/A
Pfam	UHGV-1366291_47	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
PHROG	UHGV-1366291_48	phrog_36	73.1	4.4e-21	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1366291_48	658655.HMPREF0988_02569	51.6	0.00000306	sigma factor activity	N/A
Pfam	UHGV-1366291_48	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-1366291_48	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1366291_48	PF04545,PF18323,MF_00674,NF009172,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-1366291_50	phrog_924	51.2	0.000000000000026	N/A	unknown function
Pfam	UHGV-1366291_50	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1366291_50	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-1366291_52	phrog_9958	125.9	2.1e-37	N/A	unknown function
UniRef90	UHGV-1366291_52	UniRef90_UPI001D08A241	167.0	0	N/A	N/A
eggNOG-mapper	UHGV-1366291_52	1160721.RBI_I01591	142.0	3.30999e-40	N/A	N/A
structural_annotation	UHGV-1366291_52	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-1366291_58	K01160	58.0	3e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1366291_58	phrog_34	63.4	4.2e-18	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366291_58	UniRef90_UPI0018ABA1B6	150.0	1.68156e-44	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1366291_58	875454.BAEW01000002_gene491	106.0	7.46e-28	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1366291_58	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1366291_58	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1366291_58	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1366291_60	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-1366291_61	K02086	46.5	0.00000000000048	dnaD; DNA replication protein	N/A
PHROG	UHGV-1366291_61	phrog_186	91.9	8.9e-27	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366291_61	UniRef90_A0A318KSV9	115.0	1.12e-27	DnaD/phage-associated family protein	N/A
eggNOG-mapper	UHGV-1366291_61	428127.EUBDOL_01512	110.0	4.03e-26	DnaD domain protein	N/A
Pfam	UHGV-1366291_61	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1366291_61	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-1366291_61	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1366291_61	PF07106,PF07261,MF_01177,TIGR01714,TIGR01446,COG5529	N/A	N/A	N/A	N/A
PHROG	UHGV-1366291_62	phrog_4973	55.5	8.9e-16	N/A	unknown function
UniRef90	UHGV-1366291_62	UniRef90_A0A3D3Y5F2	66.2	0.00000000000111	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1366291_62	584708.Apau_1668	47.4	0.00000907	Helix-turn-helix domain	N/A
Pfam	UHGV-1366291_62	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1366291_62	PF14090,TIGR00373,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-1366291_63	K03111	135.7	5.19999e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1366291_63	phrog_44	139.7	1.70006e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366291_63	UniRef90_A0A1Q6T150	188.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1366291_63	411471.SUBVAR_04646	182.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1366291_63	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1366291_63	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1366291_63	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1366291_63	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1366291_63	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1366291_64	phrog_7566	58.6	8.8e-17	N/A	unknown function
PHROG	UHGV-1366291_65	phrog_72	50.2	0.00000000000002	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366291_65	UniRef90_UPI001F3F3E5C	84.3	2.94e-17	recombination protein NinB	N/A
eggNOG-mapper	UHGV-1366291_65	445972.ANACOL_01825	117.0	8e-31	N/A	N/A
structural_annotation	UHGV-1366291_65	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1366291_66	phrog_155	154.9	0	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1366291_66	UniRef90_UPI0018978832	178.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-1366291_66	1289595.M1Q0X6_9VIRU	168.0	0	ERF superfamily	N/A
Pfam	UHGV-1366291_66	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1366291_66	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1366291_69	phrog_27197	46.2	0.00000000000093	N/A	unknown function
eggNOG-mapper	UHGV-1366291_69	645991.Sgly_0315	88.6	1.62e-19	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1366291_69	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1366291	Yes	40,774	51	100	1
UHGV-1405019	No	27,452	51	67	1