vOTU vOTU-056077

vOTU: vOTU-056077

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-056077
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00025 → vSUBFAM-04703 → vGENUS-08629 → vSUBGEN-08863 → vOTU-056077
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales
Host range breadth	Order
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-1367434
Biosample ID	N/A
Genome length (bp)	40,606 bps
CheckV completeness	100.00% (Complete)
CDS count	57
CDS density	92.80%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales	Total connections	18	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1367434_3	1203602.HMPREF1527_01098	48.9	0.000000372	N/A	N/A
PHROG	UHGV-1367434_5	phrog_36	47.6	0.0000000000003	transcriptional regulator	transcription regulation
structural_annotation	UHGV-1367434_5	PF07374,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-1367434_7	K02315	187.8	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1367434_7	phrog_50	172.2	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367434_7	UniRef90_R6WX70	289.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-1367434_7	203119.Cthe_2467	255.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-1367434_7	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-1367434_7	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-1367434_7	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1367434_7	PF01695,MF_01158,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1367434_8	phrog_6251	162.3	0	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367434_8	UniRef90_UPI0002492C87	154.0	3.64057e-42	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1367434_8	1444306.JFZC01000052_gene793	136.0	4.36e-36	dnaD_dom DnaD domain protein	N/A
COG	UHGV-1367434_8	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1367434_8	PF09681,PF07261,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-1367434_13	phrog_599	51.3	0.000000000000025	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-1367434_13	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1367434_13	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-1367434_13	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1367434_13	PF14354,NF007260	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367434_14	PF18300,MF_01549,NF007981	N/A	N/A	N/A	N/A
PHROG	UHGV-1367434_15	phrog_4973	58.7	9.1e-17	N/A	unknown function
UniRef90	UHGV-1367434_15	UniRef90_A0A6J5PW59	55.5	0.0000000158	Helix-turn-helix domain containing protein	N/A
Pfam	UHGV-1367434_15	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1367434_15	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-1367434_16	K01520	139.2	3.20001e-41	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1367434_16	phrog_135	130.9	6.7e-39	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367434_16	UniRef90_R5YVN2	177.0	0	Deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-1367434_16	1282887.AUJG01000016_gene1113	143.0	5.40999e-41	N/A	N/A
Pfam	UHGV-1367434_16	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-1367434_16	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-1367434_16	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-1367434_16	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-1367434_17	phrog_244	93.8	1.9e-27	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1367434_17	1304866.K413DRAFT_1199	120.0	2.42e-33	N/A	N/A
structural_annotation	UHGV-1367434_17	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-1367434_19	K03111	148.2	7.84727e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1367434_19	phrog_44	160.0	0	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367434_19	UniRef90_A0A7C6GL00	183.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1367434_19	1235835.C814_01372	140.0	1.3e-40	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1367434_19	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1367434_19	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1367434_19	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1367434_19	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1367434_19	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-1367434_21	UniRef90_A0A098GES5	92.0	2.61e-22	Putative phage associated protein	N/A
structural_annotation	UHGV-1367434_21	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
PHROG	UHGV-1367434_22	phrog_59	123.8	7.8e-37	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367434_22	UniRef90_A0A136WG54	111.0	1.11e-27	NUMOD4 motif protein	N/A
eggNOG-mapper	UHGV-1367434_22	749413.E5DV63_9VIRU	102.0	2.54e-24	HNH endonuclease	N/A
PADLOC	UHGV-1367434_22	HEase_00016	80.9	5.1e-24	homing endonuclease	RM
Pfam	UHGV-1367434_22	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1367434_22	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-1367434_22	PF07463,PF13392	N/A	N/A	N/A	N/A
PHROG	UHGV-1367434_23	phrog_72	60.6	2.6e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367434_23	UniRef90_A0A8D9PDS2	166.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-1367434_23	445972.ANACOL_01825	130.0	5.71e-36	N/A	N/A
structural_annotation	UHGV-1367434_23	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1367434_24	phrog_14970	225.4	0	N/A	unknown function
UniRef90	UHGV-1367434_24	UniRef90_UPI00164BFA28	205.0	0	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-1367434_24	411470.RUMGNA_02193	182.0	0	double-strand break repair protein	N/A
Pfam	UHGV-1367434_24	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-1367434_24	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1367434_24	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
UniRef90	UHGV-1367434_30	UniRef90_A0A2K9J3R6	70.5	0.0000000000000183	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-1367434_30	1385512.N784_13400	64.3	0.000000000000771	N/A	N/A
structural_annotation	UHGV-1367434_30	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1367434_31	K22300	55.4	0.0000000000000014	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1367434_31	phrog_8	69.2	8.2e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-1367434_31	UniRef90_UPI00148B282E	107.0	5.81e-28	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1367434_31	679192.HMPREF9013_1324	93.2	2.07e-21	Peptidase S24-like	N/A
Pfam	UHGV-1367434_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1367434_31	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1367434_31	PF13560,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1367434_32	K06400	243.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1367434_32	phrog_95	264.5	0	integrase	integration and excision
UniRef90	UHGV-1367434_32	UniRef90_UPI00195BF196	280.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1367434_32	411470.RUMGNA_02175	267.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1367434_32	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1367434_32	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1367434_32	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1367434_32	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-1367434_34	K08640	97.2	2.7e-28	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1367434_34	phrog_894	108.9	5.4e-32	endolysin	lysis
UniRef90	UHGV-1367434_34	UniRef90_A0A329TXZ4	171.0	0	Peptidase M15	N/A
eggNOG-mapper	UHGV-1367434_34	718252.FP2_17010	169.0	0	Peptidase M15A	N/A
Pfam	UHGV-1367434_34	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-1367434_34	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367434_34	PF05951,COG3108	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1367434_35	1121929.KB898684_gene1948	47.8	0.00000516	SPP1 phage holin	N/A
Pfam	UHGV-1367434_35	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
PHROG	UHGV-1367434_36	phrog_1863	76.1	2.8e-23	N/A	unknown function
UniRef90	UHGV-1367434_36	UniRef90_UPI001F223E8B	88.2	2.79e-21	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-1367434_36	1232453.BAIF02000059_gene1610	79.7	8.25e-19	N/A	N/A
PHROG	UHGV-1367434_38	phrog_14770	122.4	7.9e-37	N/A	unknown function
eggNOG-mapper	UHGV-1367434_38	445971.ANASTE_00728	233.0	0	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair	N/A
Pfam	UHGV-1367434_38	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
Pfam	UHGV-1367434_38	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-1367434_38	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
UniRef90	UHGV-1367434_40	UniRef90_UPI001407F823	173.0	2.63444e-43	N/A	N/A
eggNOG-mapper	UHGV-1367434_40	445971.ANASTE_00721	325.0	0	N/A	N/A
structural_annotation	UHGV-1367434_40	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-1367434_41	phrog_13046	49.2	0.000000000000067	N/A	unknown function
structural_annotation	UHGV-1367434_41	PF20387	N/A	N/A	N/A	N/A
COG	UHGV-1367434_44	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-1367434_45	phrog_2234	59.4	1.2e-24	tail spike protein	tail
eggNOG-mapper	UHGV-1367434_45	983548.Krodi_2764	91.7	6.86e-17	Parallel beta-helix repeats	N/A
Pfam	UHGV-1367434_45	PF13229	N/A	N/A	Right handed beta helix region	Beta_helix
COG	UHGV-1367434_45	COG5434	N/A	N/A	Polygalacturonase	N/A
PHROG	UHGV-1367434_47	phrog_267	86.1	3.5e-25	major head protein	head and packaging
UniRef90	UHGV-1367434_47	UniRef90_UPI0018C21AC0	143.0	1.17e-37	coat protein	N/A
eggNOG-mapper	UHGV-1367434_47	1232449.BAHV02000016_gene1819	204.0	0	P22 coat protein-protein 5 domain protein	N/A
structural_annotation	UHGV-1367434_47	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1367434_49	phrog_156	102.9	1.3e-31	portal protein	head and packaging
eggNOG-mapper	UHGV-1367434_49	445971.ANASTE_00716	425.0	0	N/A	N/A
structural_annotation	UHGV-1367434_49	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1367434_51	K06909	235.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1367434_51	phrog_3717	215.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1367434_51	UniRef90_A0A3B8SUX3	593.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1367434_51	445971.ANASTE_00711	554.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1367434_51	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-1367434_51	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1367434_51	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1367434_51	PF04466,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1367434_52	393480.FNP_1414	53.9	0.0000000283	DNA packaging	N/A
COG	UHGV-1367434_52	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1367434_53	1236514.BAKL01000051_gene3714	60.1	0.00000000002	N/A	N/A
structural_annotation	UHGV-1367434_53	PF09465,COG0231	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367434_56	PF02185,NF012003	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1367434	Yes	40,606	45	100	1