vOTU vOTU-056172

vOTU: vOTU-056172

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-056172
Number of genomes	2
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-02453 → vGENUS-12892 → vSUBGEN-20142 → vOTU-056172
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1368067
Biosample ID	SAMEA2582095
Genome length (bp)	38,376 bps
CheckV completeness	100.00% (Complete)
CDS count	73
CDS density	93.35%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium lactatiformans	Total connections	158	Host agreement	99.37
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1368067_1	742735.HMPREF9467_00844	70.5	0.00000000000222	N/A	N/A
AcrCatalog	UHGV-1368067_3	cluster_35670	154.0	0	NA	N/A
structural_annotation	UHGV-1368067_3	PF11998	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1368067_4	PF10743,NF033787	N/A	N/A	N/A	N/A
KOfam	UHGV-1368067_5	K22300	57.3	3.6e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1368067_5	phrog_8	52.7	0.000000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-1368067_5	UniRef90_A0A810QCI5	94.0	5.69e-24	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1368067_5	1519439.JPJG01000066_gene2398	56.6	0.000000016	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1368067_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1368067_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1368067_5	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1368067_6	phrog_8	55.8	0.000000000000001	transcriptional regulator	transcription regulation
UniRef90	UHGV-1368067_6	UniRef90_A0A357CY43	76.6	8.37e-16	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1368067_6	1378168.N510_01712	65.9	0.0000000000212	N/A	N/A
Pfam	UHGV-1368067_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1368067_6	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1368067_10	1423754.BALY01000001_gene1615	95.5	3.81e-23	N/A	N/A
Pfam	UHGV-1368067_10	PF05987	N/A	N/A	N/A	DUF898
COG	UHGV-1368067_10	COG4269	N/A	N/A	N/A	N/A
KOfam	UHGV-1368067_11	K14059	78.3	1.4e-22	int; integrase	N/A
PHROG	UHGV-1368067_11	phrog_1	99.9	3.2e-29	integrase	integration and excision
UniRef90	UHGV-1368067_11	UniRef90_UPI0011AF8E34	244.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1368067_11	693746.OBV_41260	180.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1368067_11	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1368067_11	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1368067_11	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1368067_12	1232443.BAIA02000078_gene6	54.7	0.000000039	N/A	N/A
structural_annotation	UHGV-1368067_13	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1368067_15	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1368067_16	1408437.JNJN01000043_gene803	68.2	0.0000000000241	N/A	N/A
UniRef90	UHGV-1368067_19	UniRef90_UPI001C037734	99.0	5.55e-26	LuxR C-terminal-related transcriptional regulator	N/A
Pfam	UHGV-1368067_19	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-1368067_19	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-1368067_20	K07729	67.4	2.9e-19	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1368067_20	phrog_3	54.6	0.0000000000000049	transcriptional repressor	transcription regulation
UniRef90	UHGV-1368067_20	UniRef90_UPI0009E291B2	108.0	7.31e-30	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1368067_20	760568.Desku_1400	54.7	0.00000000251	sequence-specific DNA binding	N/A
PADLOC	UHGV-1368067_20	retron_type_VI_hth_cluster2_1	42.1	0.000000000025	N/A	Retron
Pfam	UHGV-1368067_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1368067_20	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1368067_20	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1368067_22	phrog_12732	41.9	0.00000000000045	N/A	unknown function
PHROG	UHGV-1368067_23	phrog_1129	76.7	1.7e-22	holin	lysis
UniRef90	UHGV-1368067_23	UniRef90_UPI00051B7422	124.0	3.01e-35	phage holin family protein	N/A
eggNOG-mapper	UHGV-1368067_23	411460.RUMTOR_01325	120.0	2.4e-34	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1368067_23	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1368067_23	PF16079	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1368067_24	33035.JPJF01000090_gene94	70.5	0.0000000000000142	N/A	N/A
KOfam	UHGV-1368067_25	K19304	96.0	5e-28	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-1368067_25	phrog_7767	96.0	2.5e-28	metallo-endopeptidase	other
UniRef90	UHGV-1368067_25	UniRef90_A0A3A6EBG8	468.0	0	M23 family peptidase	N/A
eggNOG-mapper	UHGV-1368067_25	1041147.AUFB01000010_gene1454	90.1	4.81e-18	Membrane proteins related to metalloendopeptidases	N/A
Pfam	UHGV-1368067_25	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-1368067_25	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-1368067_25	PF01551,NF040883,COG0739,COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-1368067_26	phrog_24451	71.4	1.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-1368067_26	1408437.JNJN01000040_gene189	75.5	6.63e-16	N/A	N/A
PHROG	UHGV-1368067_27	phrog_16573	54.6	8.1e-16	N/A	unknown function
UniRef90	UHGV-1368067_27	UniRef90_A0A0D8IYB2	633.0	0	BppU_N domain-containing protein	N/A
Pfam	UHGV-1368067_27	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-1368067_27	PF10651,PF04721,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-1368067_28	phrog_1067	390.5	0	minor head protein	head and packaging
UniRef90	UHGV-1368067_28	UniRef90_A0A0D8IVK1	921.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1368067_28	1123263.AUKY01000068_gene489	420.0	0	Phage minor structural protein	N/A
Pfam	UHGV-1368067_28	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1368067_28	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1368067_28	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1368067_28	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1368067_29	phrog_33	75.3	1.3e-21	distal tail protein Dit	tail
UniRef90	UHGV-1368067_29	UniRef90_A0A1C6H6D2	200.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1368067_29	1123263.AUKY01000068_gene490	139.0	8.78e-38	tail component	N/A
COG	UHGV-1368067_29	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1368067_29	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1368067_30	phrog_6900	275.4	0	tail length tape measure protein	tail
UniRef90	UHGV-1368067_30	UniRef90_A0A3D0EFB4	275.0	0	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-1368067_30	1499683.CCFF01000017_gene2565	329.0	0	tape measure	N/A
COG	UHGV-1368067_30	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1368067_30	MF_04138,COG5281	N/A	N/A	N/A	N/A
PHROG	UHGV-1368067_33	phrog_885	105.2	5.1e-31	major tail protein	tail
UniRef90	UHGV-1368067_33	UniRef90_A0A843J9F0	177.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1368067_33	1111121.HMPREF1247_0789	192.0	0	N/A	N/A
structural_annotation	UHGV-1368067_33	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1368067_34	phrog_17405	57.2	2.6e-16	head protein	head and packaging
UniRef90	UHGV-1368067_34	UniRef90_A0A415JI88	105.0	4.72e-27	N/A	N/A
structural_annotation	UHGV-1368067_34	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1368067_35	phrog_17977	72.3	4.8e-21	N/A	unknown function
UniRef90	UHGV-1368067_35	UniRef90_A0A285PT57	102.0	4.92e-26	Phage head-tail joining protein	N/A
structural_annotation	UHGV-1368067_35	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1368067_36	phrog_1236	43.1	0.0000000000021	head protein	head and packaging
PHROG	UHGV-1368067_37	phrog_212	265.3	0	major head protein	head and packaging
UniRef90	UHGV-1368067_37	UniRef90_A0A8J6JGV9	577.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1368067_37	935836.JAEL01000021_gene1494	367.0	0	N/A	N/A
structural_annotation	UHGV-1368067_37	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1368067_38	phrog_194	40.1	0.000000000061	head scaffolding protein	head and packaging
UniRef90	UHGV-1368067_38	UniRef90_A0A6B9SU02	102.0	1.6e-23	Fibronectin autolysin	N/A
structural_annotation	UHGV-1368067_40	PF03869,NF010256	N/A	N/A	N/A	N/A
PHROG	UHGV-1368067_44	phrog_5	78.2	1.4e-22	tail completion or Neck1 protein	connector
UniRef90	UHGV-1368067_44	UniRef90_UPI0018AA0B5A	203.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1368067_44	1280685.AUKC01000004_gene1630	132.0	5.72e-38	N/A	N/A
Pfam	UHGV-1368067_44	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-1368067_44	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1368067_44	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1368067_45	phrog_595	124.1	1.5e-36	head maturation protease	head and packaging
UniRef90	UHGV-1368067_45	UniRef90_A0A3D3Y165	512.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1368067_45	1504822.CCNO01000013_gene286	199.0	0	cell adhesion	N/A
Pfam	UHGV-1368067_45	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1368067_45	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1368067_45	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1368067_45	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1368067_46	phrog_64	180.3	0	portal protein	head and packaging
UniRef90	UHGV-1368067_46	UniRef90_UPI001AA0B7FF	506.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1368067_46	673376.F2VHW1_9CAUD	234.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1368067_46	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
KOfam	UHGV-1368067_47	K06909	125.2	6.4e-37	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1368067_47	phrog_10250	173.1	0	N/A	unknown function
UniRef90	UHGV-1368067_47	UniRef90_A0A3D3Y0N9	650.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1368067_47	1226322.HMPREF1545_00043	607.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1368067_47	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1368067_47	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1368067_47	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1368067_47	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-1368067_48	UniRef90_UPI0009523D83	187.0	0	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-1368067_48	1232443.BAIA02000078_gene38	164.0	0	N/A	N/A
Pfam	UHGV-1368067_48	PF04218	N/A	N/A	CENP-B N-terminal DNA-binding domain	CENP-B_N
structural_annotation	UHGV-1368067_48	PF13542	N/A	N/A	N/A	N/A
PHROG	UHGV-1368067_50	phrog_36	53.8	0.0000000000000036	transcriptional regulator	transcription regulation
structural_annotation	UHGV-1368067_50	PF07374,TIGR01637	N/A	N/A	N/A	N/A
PHROG	UHGV-1368067_53	phrog_2245	90.6	1.6e-26	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-1368067_53	UniRef90_A0A4U9RLZ8	71.6	0.0000000000000243	N/A	N/A
eggNOG-mapper	UHGV-1368067_53	588581.Cpap_1498	69.7	0.0000000000000272	COG NOG14118 non supervised orthologous group	N/A
structural_annotation	UHGV-1368067_57	PF06257,NF011232	N/A	N/A	N/A	N/A
PHROG	UHGV-1368067_58	phrog_38832	53.3	1.1e-29	N/A	unknown function
eggNOG-mapper	UHGV-1368067_58	665956.HMPREF1032_03087	120.0	2.39e-33	N/A	N/A
PHROG	UHGV-1368067_60	phrog_757	187.3	0	DNA methyltransferase	other
UniRef90	UHGV-1368067_60	UniRef90_A0A3A6EPW1	399.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1368067_60	397290.C810_01487	270.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1368067_60	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1368067_60	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1368067_62	phrog_599	49.3	0.00000000000007	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-1368067_62	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-1368067_62	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1368067_62	PF14354,TIGR03655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1368067_64	UniRef90_A0A8D9PDK2	55.8	0.0000000345	Zinc-ribbon containing domain	N/A
PHROG	UHGV-1368067_66	phrog_190	123.0	2.2e-36	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1368067_66	UniRef90_A0A6N7XIA3	125.0	2.71e-35	N/A	N/A
eggNOG-mapper	UHGV-1368067_66	342113.DM82_1124	104.0	7.99e-27	N/A	N/A
Pfam	UHGV-1368067_66	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1368067_66	PF06356	N/A	N/A	N/A	N/A
Pfam	UHGV-1368067_67	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1368067_67	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1368067_68	phrog_16304	87.0	2.6e-25	N/A	unknown function
UniRef90	UHGV-1368067_68	UniRef90_UPI001E560709	79.0	0.0000000000000253	N/A	N/A
eggNOG-mapper	UHGV-1368067_68	445972.ANACOL_03338	65.9	0.000000000549	DnaD domain protein	N/A
Pfam	UHGV-1368067_68	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1368067_68	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1368067_68	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-1368067_69	phrog_398	196.3	0	N/A	unknown function
UniRef90	UHGV-1368067_69	UniRef90_UPI00196739CB	466.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-1368067_69	936573.HMPREF1147_1303	190.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-1368067_69	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-1368067_69	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-1368067_70	phrog_561	163.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1368067_70	UniRef90_A0A174RC35	191.0	0	RecT family	N/A
eggNOG-mapper	UHGV-1368067_70	557598.LHK_01792	193.0	0	N/A	N/A
Pfam	UHGV-1368067_70	PF03837	N/A	N/A	RecT family	RecT
structural_annotation	UHGV-1368067_70	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1368067_71	phrog_298	91.8	2.3e-27	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1368067_71	UniRef90_A0A6M3LTS1	65.5	0.000000000905	Putative PD-(D/E)XK nuclease superfamily protein	N/A
COG	UHGV-1368067_71	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-1368067_71	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1368067	Yes	38,376	45	100	1
UHGV-1624573	No	12,192	43	32	1