vOTU vOTU-056253

vOTU: vOTU-056253

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-056253
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella sp900545075
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-01831 → vGENUS-12260 → vSUBGEN-18394 → vOTU-056253
Host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Eggerthellaceae → CAG-1427
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1368503
Biosample ID	SAMEA3882551
Genome length (bp)	31,134 bps
CheckV completeness	100.00% (Complete)
CDS count	51
CDS density	93.04%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Eggerthellaceae → CAG-1427	Total connections	10	Host agreement	100
PHIST-predicted host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella sp900545075	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1368503_2	K01447	84.8	1.4e-24	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1368503_2	phrog_2338	104.9	8.3e-31	endolysin	lysis
UniRef90	UHGV-1368503_2	UniRef90_A0A3N0I9E4	237.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-1368503_2	35760.BCHO_0821	147.0	2.72e-39	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1368503_2	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1368503_2	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-1368503_2	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1368503_2	PF01510,PF18342,MF_04111,NF008758,NF040670,COG5632	N/A	N/A	N/A	N/A
UniRef90	UHGV-1368503_4	UniRef90_A0A133L9H0	92.0	5.67e-21	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1368503_4	1437608.BBIA_2534	77.8	3.36e-16	sequence-specific DNA binding	N/A
COG	UHGV-1368503_4	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-1368503_4	PF14590,TIGR03070,COG2944	N/A	N/A	N/A	N/A
Pfam	UHGV-1368503_6	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1368503_6	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-1368503_6	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
KOfam	UHGV-1368503_8	K01160	45.6	0.0000000000018	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1368503_8	phrog_1682	79.0	6.2e-23	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1368503_8	UniRef90_R7CCV4	165.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1368503_8	1226322.HMPREF1545_04070	98.2	1.03e-24	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-1368503_8	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1368503_8	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1368503_10	K03497	77.4	2.7e-22	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1368503_10	phrog_18056	143.4	1.60028e-42	ParB-like partition nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1368503_10	UniRef90_A0A369MN63	197.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-1368503_10	1125712.HMPREF1316_2383	105.0	4.51e-22	ParB-like nuclease domain	N/A
Pfam	UHGV-1368503_10	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1368503_10	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1368503_10	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
UniRef90	UHGV-1368503_11	UniRef90_A0A8B0GPV3	115.0	1.91e-26	N/A	N/A
eggNOG-mapper	UHGV-1368503_11	469378.Ccur_02980	96.7	2.86e-20	N/A	N/A
Pfam	UHGV-1368503_11	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1368503_11	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1368503_12	phrog_561	98.3	3.7e-30	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1368503_12	UniRef90_UPI00123B0CBF	190.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-1368503_12	1111121.HMPREF1247_0809	191.0	0	N/A	N/A
KOfam	UHGV-1368503_14	K03111	133.7	2e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1368503_14	phrog_44	134.2	8.8e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1368503_14	UniRef90_K0Z6V8	230.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1368503_14	742818.HMPREF9451_01652	230.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1368503_14	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1368503_14	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1368503_14	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1368503_14	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1368503_14	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1368503_17	phrog_15768	42.6	0.00000000001	N/A	unknown function
eggNOG-mapper	UHGV-1368503_17	1123058.KB894219_gene165	52.8	0.000000962	COG NOG19076 non supervised orthologous group	N/A
Pfam	UHGV-1368503_17	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1368503_17	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1368503_18	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1368503_21	K06940	58.9	1e-16	N/A	N/A
PHROG	UHGV-1368503_21	phrog_32498	68.8	7.2e-20	N/A	unknown function
UniRef90	UHGV-1368503_21	UniRef90_A0A7X9UBZ8	137.0	5.41e-39	YkgJ family cysteine cluster protein	N/A
Pfam	UHGV-1368503_21	PF03692	N/A	N/A	Putative zinc- or iron-chelating domain	CxxCxxCC
COG	UHGV-1368503_21	COG0727	N/A	N/A	N/A	N/A
KOfam	UHGV-1368503_22	K01520	146.5	1.79366e-43	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-1368503_22	phrog_135	139.3	1.70006e-41	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1368503_22	UniRef90_A0A3C1XKU1	127.0	1.35e-34	Deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-1368503_22	397291.C804_00898	112.0	1.64e-29	dUTPase	N/A
Pfam	UHGV-1368503_22	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-1368503_22	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-1368503_22	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-1368503_22	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1368503_23	521003.COLINT_02330	68.2	0.0000000000398	N/A	N/A
structural_annotation	UHGV-1368503_23	PF16090	N/A	N/A	N/A	N/A
PHROG	UHGV-1368503_26	phrog_21525	58.6	9.1e-17	N/A	unknown function
PHROG	UHGV-1368503_27	phrog_6504	46.4	0.00000000000057	N/A	unknown function
PHROG	UHGV-1368503_31	phrog_21498	70.3	3e-20	N/A	unknown function
UniRef90	UHGV-1368503_31	UniRef90_A0A352IC00	58.5	0.000000133	Chromosome partitioning protein ParB (Fragment)	N/A
eggNOG-mapper	UHGV-1368503_31	1121866.AUGK01000014_gene2036	77.0	0.00000000000000337	DNA binding	N/A
COG	UHGV-1368503_31	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
KOfam	UHGV-1368503_32	K06909	271.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1368503_32	phrog_3717	118.1	6.1e-35	terminase large subunit	head and packaging
UniRef90	UHGV-1368503_32	UniRef90_A0A1Y4G845	533.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1368503_32	1273103.NM10_06806	285.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1368503_32	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1368503_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
PHROG	UHGV-1368503_33	phrog_533	200.0	0	portal protein	head and packaging
UniRef90	UHGV-1368503_33	UniRef90_UPI00189938B4	255.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1368503_33	1232436.CAPF01000009_gene1765	231.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-1368503_33	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1368503_34	phrog_581	185.3	0	minor head protein	head and packaging
UniRef90	UHGV-1368503_34	UniRef90_UPI000C17AE42	195.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1368503_34	1111121.HMPREF1247_0842	186.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1368503_34	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1368503_34	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1368503_34	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1368503_36	phrog_194	56.2	6.7e-16	head scaffolding protein	head and packaging
Pfam	UHGV-1368503_36	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1368503_36	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-1368503_37	phrog_544	193.0	0	major head protein	head and packaging
UniRef90	UHGV-1368503_37	UniRef90_A0A810PZM2	276.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1368503_37	936154.STP_1268	216.0	0	N/A	N/A
structural_annotation	UHGV-1368503_37	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1368503_38	445975.COLSTE_01109	50.4	0.00000186	N/A	N/A
structural_annotation	UHGV-1368503_39	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1368503_40	phrog_556	71.6	9e-21	minor head protein	head and packaging
UniRef90	UHGV-1368503_40	UniRef90_UPI000F7A81E3	75.9	0.00000000000000178	minor capsid protein	N/A
eggNOG-mapper	UHGV-1368503_40	1214217.ALNF01000014_gene1371	50.4	0.00000239	Minor capsid protein	N/A
Pfam	UHGV-1368503_40	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1368503_40	PF11114,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1368503_41	PF20765,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1368503_42	phrog_3099	42.0	0.000000000014	N/A	unknown function
structural_annotation	UHGV-1368503_42	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1368503_44	phrog_706	125.5	3.8e-37	N/A	unknown function
UniRef90	UHGV-1368503_44	UniRef90_UPI0009B9DB3F	143.0	1.34e-39	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1368503_44	411468.CLOSCI_02406	70.5	0.00000000000198	COG NOG24969 non supervised orthologous group	N/A
Pfam	UHGV-1368503_44	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1368503_44	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1368503_45	phrog_1686	193.8	0	tail length tape measure protein	tail
UniRef90	UHGV-1368503_45	UniRef90_UPI0013ED7B29	574.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-1368503_45	1437608.BBIA_2143	229.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-1368503_45	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1368503_45	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1368503_45	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1368503_45	PF20155,COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-1368503_46	UniRef90_A0A7Y0EUM5	128.0	6.04e-32	Tail fiber protein	N/A
eggNOG-mapper	UHGV-1368503_46	1111121.HMPREF1247_0852	178.0	0	N/A	N/A
structural_annotation	UHGV-1368503_46	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1368503_47	phrog_538	136.7	6.40001e-41	minor tail protein	tail
UniRef90	UHGV-1368503_47	UniRef90_A0A087E4D2	209.0	0	Phage head fiber protein	N/A
eggNOG-mapper	UHGV-1368503_47	469378.Ccur_02640	184.0	0	N/A	N/A
Pfam	UHGV-1368503_47	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-1368503_47	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1368503_48	phrog_13141	131.6	5.1e-39	N/A	unknown function
UniRef90	UHGV-1368503_48	UniRef90_A0A7K3I4P1	108.0	7.59e-25	H_lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-1368503_48	78345.BMERY_0866	115.0	6.34e-28	N/A	N/A
structural_annotation	UHGV-1368503_48	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-1368503_50	phrog_4105	65.9	5.4e-19	N/A	unknown function
UniRef90	UHGV-1368503_50	UniRef90_A0A087A0L5	71.2	0.0000000000000678	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-1368503_50	218140.BPSY_0948	96.7	1.15e-24	N/A	N/A
PHROG	UHGV-1368503_51	phrog_881	42.9	0.0000000000062	holin	lysis
UniRef90	UHGV-1368503_51	UniRef90_A0A7L9TXR1	58.9	0.000000000192	Holin	N/A
eggNOG-mapper	UHGV-1368503_51	1504822.CCNO01000015_gene626	52.8	0.00000000899	Putative phage holin Dp-1	N/A
Pfam	UHGV-1368503_51	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1368503	Yes	31,134	63	100	1
UHGV-0107025	No	10,115	65	32	1