vOTU vOTU-056401

vOTU: vOTU-056401

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-056401
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → TANB77 → CAG-508 → CAG-273
Taxonomy (UHGV)	vFAM-00025 → vSUBFAM-00671 → vGENUS-07890 → vSUBGEN-06805 → vOTU-056401
Host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → CAG-508 → CAG-273
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1369437
Biosample ID	SAMEA2338721
Genome length (bp)	38,397 bps
CheckV completeness	100.00% (Complete)
CDS count	57
CDS density	92.12%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → CAG-508 → CAG-273	Total connections	138	Host agreement	71.01
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → CAG-508 → CAG-273	Total connections	15	Host agreement	93.33

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1369437_2	K07729	53.0	0.0000000000000062	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1369437_2	phrog_8	45.0	0.0000000000022	transcriptional regulator	transcription regulation
UniRef90	UHGV-1369437_2	UniRef90_R6YGA8	145.0	3.60134e-43	Post-exponential-phase responses transcriptional regulator	N/A
eggNOG-mapper	UHGV-1369437_2	1218108.KB908292_gene1726	58.2	0.0000000221	DNA-binding protein	N/A
PADLOC	UHGV-1369437_2	retron_type_VI_hth_cluster2_1	44.6	0.0000000000041	N/A	Retron
Pfam	UHGV-1369437_2	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
Pfam	UHGV-1369437_2	PF09388	N/A	N/A	Spo0E like sporulation regulatory protein	SpoOE-like
COG	UHGV-1369437_2	COG3800	N/A	N/A	Predicted transcriptional regulator	N/A
structural_annotation	UHGV-1369437_2	PF13443,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1369437_5	phrog_2329	64.6	1.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-1369437_5	1151292.QEW_0754	52.4	0.000000365	N/A	N/A
structural_annotation	UHGV-1369437_6	PF10754	N/A	N/A	N/A	N/A
PHROG	UHGV-1369437_7	phrog_2579	85.4	3.2e-25	ParB C-terminal domain	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1369437_7	1408437.JNJN01000060_gene452	388.0	0	heme binding	N/A
Pfam	UHGV-1369437_7	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
COG	UHGV-1369437_7	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
KOfam	UHGV-1369437_8	K22409	47.4	0.00000000000032	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1369437_8	phrog_4602	45.9	0.0000000000011	transglycosylase	other
eggNOG-mapper	UHGV-1369437_8	483219.LILAB_06590	70.1	0.0000000000661	Lysin motif	N/A
Pfam	UHGV-1369437_8	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-1369437_8	COG1388	N/A	N/A	LysM repeat	N/A
PHROG	UHGV-1369437_9	phrog_9589	88.8	7.2e-26	endolysin	lysis
UniRef90	UHGV-1369437_9	UniRef90_UPI000B195CAC	191.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1369437_9	552398.HMPREF0866_03091	182.0	0	CHAP domain	N/A
Pfam	UHGV-1369437_9	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-1369437_9	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1369437_9	PF00877,TIGR02594,COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-1369437_10	phrog_881	73.9	1.4e-21	holin	lysis
UniRef90	UHGV-1369437_10	UniRef90_A0A1I7JG50	71.6	0.0000000000000047	Putative phage holin Dp-1	N/A
eggNOG-mapper	UHGV-1369437_10	1140001.I571_01849	61.6	0.00000000000664	Putative phage holin Dp-1	N/A
Pfam	UHGV-1369437_10	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1369437_10	PF16938,COG3237	N/A	N/A	N/A	N/A
PHROG	UHGV-1369437_12	phrog_372	249.9	0	tail protein	tail
UniRef90	UHGV-1369437_12	UniRef90_UPI001D0897E0	140.0	3.56e-31	N/A	N/A
eggNOG-mapper	UHGV-1369437_12	1235802.C823_05263	120.0	1.54e-25	N/A	N/A
Pfam	UHGV-1369437_12	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-1369437_12	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1369437_12	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
PHROG	UHGV-1369437_14	phrog_3287	97.5	1.1e-28	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1369437_14	1232449.BAHV02000016_gene1816	330.0	0	N/A	N/A
structural_annotation	UHGV-1369437_14	PF11134,MF_00923,TIGR04312,COG5276,COG4935	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1369437_15	1232449.BAHV02000016_gene1817	60.8	0.00000000228	N/A	N/A
PHROG	UHGV-1369437_17	phrog_1357	229.8	0	major head protein	head and packaging
UniRef90	UHGV-1369437_17	UniRef90_A0A8D9UHB3	284.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1369437_17	696281.Desru_1092	244.0	0	N/A	N/A
NCBIFam	UHGV-1369437_17	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1369437_17	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1369437_19	phrog_156	138.9	2.79993e-41	portal protein	head and packaging
UniRef90	UHGV-1369437_19	UniRef90_A0A8D9UHD1	362.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1369437_19	1121091.AUMP01000003_gene2583	308.0	0	N/A	N/A
structural_annotation	UHGV-1369437_19	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-1369437_21	K06909	134.6	9.3e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1369437_21	phrog_979	154.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1369437_21	UniRef90_A0A0M2NDA4	538.0	0	Phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-1369437_21	1232449.BAHV02000016_gene1824	536.0	0	N/A	N/A
Pfam	UHGV-1369437_21	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1369437_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1369437_21	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-1369437_22	UniRef90_UPI0014940E84	54.7	0.00000675	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-1369437_22	PF06056,COG2963	N/A	N/A	N/A	N/A
PHROG	UHGV-1369437_25	phrog_36	42.1	0.000000000016	transcriptional regulator	transcription regulation
Pfam	UHGV-1369437_25	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-1369437_25	PF05263,TIGR01636	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1369437_34	PF09871,TIGR00739	N/A	N/A	N/A	N/A
PHROG	UHGV-1369437_35	phrog_190	132.8	2.1e-39	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1369437_35	UniRef90_A0A7C9LJY9	123.0	3.58e-34	N/A	N/A
eggNOG-mapper	UHGV-1369437_35	1121105.ATXL01000006_gene1363	106.0	5.78e-28	N/A	N/A
Pfam	UHGV-1369437_35	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1369437_35	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-1369437_36	phrog_757	66.1	3.9e-19	DNA methyltransferase	other
eggNOG-mapper	UHGV-1369437_36	428127.EUBDOL_01513	265.0	0	N/A	N/A
AcrCatalog	UHGV-1369437_36	cluster_47493	190.0	0	NA	N/A
structural_annotation	UHGV-1369437_36	PF00145,MF_00341,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1369437_39	phrog_1123	54.9	0.0000000000000012	N/A	unknown function
UniRef90	UHGV-1369437_39	UniRef90_A0A7X6P6Q9	66.6	0.00000000000368	DNA gyrase	N/A
eggNOG-mapper	UHGV-1369437_39	445972.ANACOL_03346	64.7	0.00000000000333	N/A	N/A
structural_annotation	UHGV-1369437_39	PF03551,TIGR02719,COG1695	N/A	N/A	N/A	N/A
KOfam	UHGV-1369437_40	K02086	74.8	1.1e-21	dnaD; DNA replication protein	N/A
PHROG	UHGV-1369437_40	phrog_186	137.6	9.99995e-41	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1369437_40	UniRef90_A0A3B8SUV3	186.0	0	DnaB_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1369437_40	97138.C820_00775	120.0	8.08e-30	DnaD domain protein	N/A
Pfam	UHGV-1369437_40	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1369437_40	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-1369437_40	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1369437_40	PF07261,PF09681,MF_01177,TIGR01446,TIGR01714,COG3935	N/A	N/A	N/A	N/A
PHROG	UHGV-1369437_43	phrog_7566	52.9	0.0000000000000059	N/A	unknown function
PHROG	UHGV-1369437_44	phrog_72	65.2	1.1e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1369437_44	UniRef90_A0A285PU94	63.2	0.00000000198	Recombinase NinB	N/A
eggNOG-mapper	UHGV-1369437_44	411468.CLOSCI_00314	71.6	0.000000000000185	N/A	N/A
structural_annotation	UHGV-1369437_44	NF007281	N/A	N/A	N/A	N/A
KOfam	UHGV-1369437_45	K03111	144.2	1.19951e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1369437_45	phrog_44	145.5	2.70451e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1369437_45	UniRef90_R7IS09	198.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1369437_45	1291050.JAGE01000001_gene1719	174.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1369437_45	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1369437_45	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1369437_45	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1369437_45	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1369437_45	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1369437_46	phrog_155	133.9	1.1e-39	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1369437_46	UniRef90_A0A3D1PJF8	295.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1369437_46	1304866.K413DRAFT_1196	216.0	0	ERF superfamily	N/A
Pfam	UHGV-1369437_46	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-1369437_46	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1369437_46	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1369437_48	PF09943,COG3461	N/A	N/A	N/A	N/A
KOfam	UHGV-1369437_52	K07729	42.2	0.000000000014	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-1369437_52	UniRef90_A0A2T0BQ53	68.2	0.000000000000174	HTH-type transcriptional regulator Xre	N/A
eggNOG-mapper	UHGV-1369437_52	697281.Mahau_2932	54.7	0.00000000728	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-1369437_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1369437_52	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1369437_52	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1369437_53	K07729	42.8	0.000000000011	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1369437_53	phrog_8	49.7	0.000000000000085	transcriptional regulator	transcription regulation
UniRef90	UHGV-1369437_53	UniRef90_A0A1Q6LHM3	110.0	6.77e-29	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1369437_53	697281.Mahau_2933	60.1	0.000000000525	transcriptional regulator, XRE family	N/A
Pfam	UHGV-1369437_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1369437_53	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1369437_53	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1369437_54	UniRef90_A0A8A3VI41	65.5	0.00000000000324	Zinc ribbon domain-containing protein	N/A
eggNOG-mapper	UHGV-1369437_54	717605.Theco_3709	54.7	0.0000000151	N/A	N/A
Pfam	UHGV-1369437_54	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
UniRef90	UHGV-1369437_55	UniRef90_A0A7W2A7S3	141.0	1.64e-37	N/A	N/A
Pfam	UHGV-1369437_55	PF12686	N/A	N/A	N/A	DUF3800
structural_annotation	UHGV-1369437_55	PF01351,MF_00052_A,TIGR00729,COG1039	N/A	N/A	N/A	N/A
PHROG	UHGV-1369437_56	phrog_87	81.0	1.1e-23	metallo-protease	other
UniRef90	UHGV-1369437_56	UniRef90_A0A7X9HW64	87.4	2.56e-19	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1369437_56	698758.AXY_01820	77.4	5.7e-16	Zn peptidase	N/A
Pfam	UHGV-1369437_56	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1369437_56	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1369437_56	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-1369437_57	K14059	272.1	0	int; integrase	N/A
PHROG	UHGV-1369437_57	phrog_1	240.0	0	integrase	integration and excision
UniRef90	UHGV-1369437_57	UniRef90_R6HDS7	312.0	0	Phage integrase	N/A
eggNOG-mapper	UHGV-1369437_57	273068.TTE2127	256.0	0	Phage integrase family	N/A
Pfam	UHGV-1369437_57	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1369437_57	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1369437_57	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1369437_57	PF00589,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1369437	Yes	38,397	30	100	1
UHGV-0067046	No	38,389	30	99	1
UHGV-1560164	No	36,155	30	94	1