vOTU vOTU-056536

vOTU: vOTU-056536

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-056536
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00317 → vGENUS-00274 → vSUBGEN-00840 → vOTU-056536
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1370359
Biosample ID	N/A
Genome length (bp)	38,342 bps
CheckV completeness	100.00% (Complete)
CDS count	61
CDS density	91.34%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus	Total connections	94	Host agreement	74.47
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	9	Host agreement	77.78

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1370359_1	phrog_14030	144.5	6.09565e-43	N/A	unknown function
UniRef90	UHGV-1370359_1	UniRef90_UPI00156DF79C	176.0	0	NlpC/P60 family protein	N/A
eggNOG-mapper	UHGV-1370359_1	1121115.AXVN01000051_gene809	167.0	0	NLP P60 protein	N/A
Pfam	UHGV-1370359_1	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-1370359_1	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
PHROG	UHGV-1370359_2	phrog_30034	83.7	2.7e-24	N/A	unknown function
eggNOG-mapper	UHGV-1370359_2	1122971.BAME01000151_gene6566	95.1	2.96e-22	N/A	N/A
eggNOG-mapper	UHGV-1370359_5	742733.HMPREF9469_05009	64.7	0.000000000996	N/A	N/A
structural_annotation	UHGV-1370359_5	PF07210,TIGR03000	N/A	N/A	N/A	N/A
PHROG	UHGV-1370359_6	phrog_13589	169.9	0	N/A	unknown function
eggNOG-mapper	UHGV-1370359_6	742733.HMPREF9469_05009	226.0	0	N/A	N/A
PHROG	UHGV-1370359_7	phrog_31538	40.8	0.000000000038	N/A	unknown function
structural_annotation	UHGV-1370359_8	PF10651,NF038186	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370359_9	PF18614,MF_00085,NF003076	N/A	N/A	N/A	N/A
PHROG	UHGV-1370359_10	phrog_26795	115.2	3.5e-34	N/A	unknown function
eggNOG-mapper	UHGV-1370359_10	997296.PB1_16154	145.0	1.97e-37	N/A	N/A
structural_annotation	UHGV-1370359_10	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-1370359_11	UniRef90_A0A3D0W045	197.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-1370359_11	1195236.CTER_5103	131.0	2.75e-29	N/A	N/A
structural_annotation	UHGV-1370359_11	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1370359_12	phrog_8462	120.5	2e-35	tail length tape measure protein	tail
UniRef90	UHGV-1370359_12	UniRef90_A0A1M6L1P7	229.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-1370359_12	1408415.JHXL01000001_gene400	196.0	0	phage tail tape measure protein	N/A
Pfam	UHGV-1370359_12	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-1370359_12	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-1370359_12	TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370359_14	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1370359_15	phrog_88	54.3	0.0000000000000018	major tail protein	tail
UniRef90	UHGV-1370359_15	UniRef90_A0A174CNN5	67.8	0.000000000168	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-1370359_15	1195236.CTER_5106	73.2	0.000000000000245	phage major tail protein, phi13 family	N/A
COG	UHGV-1370359_15	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370359_15	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1370359_16	1203606.HMPREF1526_00974	91.7	1.71e-21	N/A	N/A
structural_annotation	UHGV-1370359_16	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1370359_17	1203606.HMPREF1526_00975	85.5	4.4e-20	N/A	N/A
structural_annotation	UHGV-1370359_17	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-1370359_18	phrog_1951	82.8	2.8e-24	head-tail adaptor	connector
UniRef90	UHGV-1370359_18	UniRef90_A0A890FC27	72.0	0.000000000000031	Phage head closure protein	N/A
eggNOG-mapper	UHGV-1370359_18	1121428.DESHY_20140___1	67.4	0.000000000000345	head-tail adaptor	N/A
COG	UHGV-1370359_18	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1370359_18	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1370359_19	phrog_5223	55.8	6.1e-16	neck protein	connector
UniRef90	UHGV-1370359_19	UniRef90_UPI000BEC4770	61.6	0.000000000205	head-tail connector protein	N/A
eggNOG-mapper	UHGV-1370359_19	411465.PEPMIC_00737	61.2	0.0000000000499	N/A	N/A
structural_annotation	UHGV-1370359_19	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1370359_20	phrog_10	171.4	0	major head protein	head and packaging
UniRef90	UHGV-1370359_20	UniRef90_UPI0018AA1B7F	357.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-1370359_20	318464.IO99_13750	325.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1370359_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1370359_20	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1370359_20	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1370359_20	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1370359_21	K01358	133.2	2.7e-39	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1370359_21	phrog_94	201.3	0	head maturation protease	head and packaging
UniRef90	UHGV-1370359_21	UniRef90_U4R420	258.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1370359_21	1203606.HMPREF1526_00979	216.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1370359_21	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1370359_21	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1370359_21	PF00574,MF_00444,NF011091,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1370359_22	phrog_12	169.4	0	portal protein	head and packaging
UniRef90	UHGV-1370359_22	UniRef90_R8W4B0	456.0	0	HK97 family phage portal protein	N/A
eggNOG-mapper	UHGV-1370359_22	1203606.HMPREF1526_00980	456.0	0	Portal protein	N/A
Pfam	UHGV-1370359_22	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1370359_22	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1370359_22	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1370359_23	phrog_9	400.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1370359_23	UniRef90_UPI001D07C789	800.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-1370359_23	1203606.HMPREF1526_00981	757.0	0	Terminase	N/A
Pfam	UHGV-1370359_23	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1370359_23	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1370359_23	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1370359_23	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1370359_24	phrog_1066	114.8	4.1e-34	N/A	unknown function
eggNOG-mapper	UHGV-1370359_24	1382358.JHVN01000024_gene1703	107.0	2.19e-28	N/A	N/A
structural_annotation	UHGV-1370359_24	PF05119,TIGR01558	N/A	N/A	N/A	N/A
UniRef90	UHGV-1370359_25	UniRef90_R6M5E4	116.0	7.92e-32	Prophage LambdaBa04 GP54	N/A
eggNOG-mapper	UHGV-1370359_25	1235793.C809_01915	120.0	1.95e-33	HNH endonuclease	N/A
COG	UHGV-1370359_25	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1370359_26	phrog_3584	128.0	7.4e-38	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1370359_26	742738.HMPREF9460_00867	127.0	3.54e-33	N/A	N/A
structural_annotation	UHGV-1370359_26	PF01446,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-1370359_27	K07319	146.5	8.40779e-45	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-1370359_27	phrog_67	143.5	1.19951e-42	DNA methyltransferase	other
UniRef90	UHGV-1370359_27	UniRef90_UPI00055C7461	222.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1370359_27	1444310.JANV01000096_gene3256	121.0	8.01e-29	DNA methylase	N/A
PADLOC	UHGV-1370359_27	MTase_II_00157	116.6	3.2e-35	Type II methyltransferase	RM
Pfam	UHGV-1370359_27	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1370359_27	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
structural_annotation	UHGV-1370359_27	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
UniRef90	UHGV-1370359_31	UniRef90_A0A417H740	167.0	0	N/A	N/A
Pfam	UHGV-1370359_31	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-1370359_31	NF041588	N/A	N/A	N/A	N/A
KOfam	UHGV-1370359_33	K03497	83.0	2.4e-24	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-1370359_33	phrog_27290	333.2	0	N/A	unknown function
UniRef90	UHGV-1370359_33	UniRef90_UPI0003130F10	291.0	0	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-1370359_33	1007096.BAGW01000033_gene1613	291.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-1370359_33	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-1370359_33	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-1370359_33	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-1370359_34	K03496	190.7	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1370359_34	phrog_164	164.4	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370359_34	UniRef90_R5EEH2	306.0	0	CobQ/CobB/MinD/ParA nucleotide binding domain protein	N/A
eggNOG-mapper	UHGV-1370359_34	742738.HMPREF9460_00854	203.0	0	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	N/A
Pfam	UHGV-1370359_34	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1370359_34	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1370359_34	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-1370359_35	K02314	234.6	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1370359_35	phrog_19	223.2	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370359_35	UniRef90_A0A3D1V9Y4	229.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-1370359_35	663278.Ethha_2283	144.0	1.74e-35	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1370359_35	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1370359_35	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1370359_35	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1370359_35	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1370359_36	phrog_270	123.3	2.5e-36	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370359_36	UniRef90_UPI001F3D92C2	179.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1370359_36	742738.HMPREF9460_00851	169.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-1370359_36	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-1370359_36	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1370359_36	PF04182,NF040939,COG3355	N/A	N/A	N/A	N/A
UniRef90	UHGV-1370359_38	UniRef90_A0A098GES5	103.0	1.06e-26	Putative phage associated protein	N/A
structural_annotation	UHGV-1370359_38	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
UniRef90	UHGV-1370359_40	UniRef90_UPI001C96492F	54.3	0.000000252	excisionase family DNA-binding protein	N/A
Pfam	UHGV-1370359_40	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1370359_40	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
structural_annotation	UHGV-1370359_40	PF12728,MF_01155,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1370359_42	phrog_6499	118.3	3.3e-35	transcriptional regulator	transcription regulation
UniRef90	UHGV-1370359_42	UniRef90_A0A3D4EJF0	129.0	2.14e-35	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1370359_42	1415774.U728_1274	105.0	3.85e-27	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1370359_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1370359_42	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-1370359_42	PF01381,MF_00535,NF040522,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1370359_43	K22300	73.3	4.8e-21	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1370359_43	phrog_8	60.5	4e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1370359_43	UniRef90_UPI001BB47897	69.3	0.000000000000244	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1370359_43	693746.OBV_27490	66.6	0.000000000000466	sequence-specific DNA binding	N/A
Pfam	UHGV-1370359_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1370359_43	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1370359_45	PF13463,MF_01909,NF033788,COG1846	N/A	N/A	N/A	N/A
KOfam	UHGV-1370359_49	K22300	66.2	7.1e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1370359_49	phrog_8	63.1	5.8e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1370359_49	UniRef90_UPI0015595971	68.9	0.000000000000624	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1370359_49	1094508.Tsac_0848	65.5	0.00000000000304	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1370359_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1370359_49	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1370359_49	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1370359_50	UniRef90_A0A3D3Y4M8	57.8	0.000000544	HTH cro/C1-type domain-containing protein	N/A
COG	UHGV-1370359_50	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1370359_50	PF13443,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1370359_52	K14059	228.0	0	int; integrase	N/A
PHROG	UHGV-1370359_52	phrog_1	194.6	0	integrase	integration and excision
UniRef90	UHGV-1370359_52	UniRef90_A0A3D1VH24	304.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1370359_52	742738.HMPREF9460_04031	261.0	0	Phage integrase family	N/A
Pfam	UHGV-1370359_52	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1370359_52	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1370359_52	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1370359_52	PF00589,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1370359_53	UniRef90_A0A7M1RTM1	73.2	0.000000000000408	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1370359_53	1408437.JNJN01000043_gene801	79.3	3.14e-16	N/A	N/A
structural_annotation	UHGV-1370359_54	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1370359_56	phrog_22984	50.8	0.000000000000029	N/A	unknown function
structural_annotation	UHGV-1370359_57	PF20477,NF033819	N/A	N/A	N/A	N/A
UniRef90	UHGV-1370359_58	UniRef90_A0A8D9PDT6	63.5	0.0000000000274	Transcriptional regulatory protein	N/A
Pfam	UHGV-1370359_58	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-1370359_58	COG2197	N/A	N/A	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	N/A
PHROG	UHGV-1370359_59	phrog_1129	67.7	1.3e-19	holin	lysis
UniRef90	UHGV-1370359_59	UniRef90_A0A6A8VHY5	124.0	1.71e-35	Enolase	N/A
eggNOG-mapper	UHGV-1370359_59	1226322.HMPREF1545_00069	127.0	1.78e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1370359_59	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1370359_59	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1370359_60	phrog_1863	54.3	9.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-1370359_60	1226322.HMPREF1545_04027	72.0	0.00000000000000136	N/A	N/A
PHROG	UHGV-1370359_61	phrog_1493	53.7	0.0000000000000045	endolysin	lysis
eggNOG-mapper	UHGV-1370359_61	1122611.KB903998_gene8216	56.2	0.0000000625	Putative peptidoglycan binding domain	N/A
Pfam	UHGV-1370359_61	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1370359_61	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1370359	Yes	38,342	59	100	1
UHGV-0084236	No	10,907	57	30	1
UHGV-1789738	No	10,907	57	30	1