vOTU vOTU-056564

vOTU: vOTU-056564

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-056564
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00579 → vGENUS-02755 → vSUBGEN-02938 → vOTU-056564
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1370586
Biosample ID	SAMN06110020
Genome length (bp)	44,324 bps
CheckV completeness	100.00% (Complete)
CDS count	79
CDS density	90.25%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170	Total connections	23	Host agreement	86.96
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
Pfam	UHGV-1370586_1	PF00560	N/A	N/A	Leucine Rich Repeat	LRR_1
structural_annotation	UHGV-1370586_2	PF12728,NF040990	N/A	N/A	N/A	N/A
UniRef90	UHGV-1370586_4	UniRef90_UPI001967CDDD	85.5	1.48e-20	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-1370586_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1370586_4	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1370586_5	K22300	42.5	0.000000000012	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1370586_5	phrog_8	44.5	0.0000000000038	transcriptional regulator	transcription regulation
UniRef90	UHGV-1370586_5	UniRef90_A0A1M5ZHX2	84.3	8.43e-19	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1370586_5	1378168.N510_01712	65.9	0.0000000000258	N/A	N/A
Pfam	UHGV-1370586_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1370586_5	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1370586_6	phrog_5319	45.9	0.00000000000045	outer membrane protein	other
eggNOG-mapper	UHGV-1370586_6	521011.Mpal_1387	66.2	0.000000000076	N/A	N/A
Pfam	UHGV-1370586_6	PF12773	N/A	N/A	Double zinc ribbon	DZR
structural_annotation	UHGV-1370586_6	PF03843,MF_01959,TIGR00752,NF041910,COG3390	N/A	N/A	N/A	N/A
UniRef90	UHGV-1370586_8	UniRef90_A0A3D3Y4M8	125.0	1.96e-32	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1370586_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1370586_8	PF13443,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1370586_9	K14059	209.4	0	int; integrase	N/A
PHROG	UHGV-1370586_9	phrog_1	204.9	0	integrase	integration and excision
UniRef90	UHGV-1370586_9	UniRef90_A0A212JT52	263.0	0	Putative Integrase family protein	N/A
eggNOG-mapper	UHGV-1370586_9	1507.HMPREF0262_00307	174.0	0	Phage integrase family	N/A
Pfam	UHGV-1370586_9	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1370586_9	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1370586_9	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1370586_9	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1370586_10	UniRef90_A0A7M1RSZ3	77.8	0.00000000000000778	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-1370586_10	1378168.N510_03079	64.3	0.000000000349	N/A	N/A
KOfam	UHGV-1370586_13	K19167	118.7	6.8e-35	abiQ; protein AbiQ	N/A
PHROG	UHGV-1370586_13	phrog_9764	125.1	4.6e-37	N/A	unknown function
UniRef90	UHGV-1370586_13	UniRef90_A0A845R8D8	216.0	0	Type III toxin-antitoxin system ToxN/AbiQ family toxin	N/A
eggNOG-mapper	UHGV-1370586_13	1519439.JPJG01000060_gene1906	175.0	0	Toxin ToxN, type III toxin-antitoxin system	N/A
PADLOC	UHGV-1370586_13	AbiQ	149.9	2.38221e-44	AbiQ	Abi
Pfam	UHGV-1370586_13	PF13958	N/A	N/A	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
structural_annotation	UHGV-1370586_13	PF13958	N/A	N/A	N/A	N/A
UniRef90	UHGV-1370586_14	UniRef90_A0A1C6JAI6	65.5	0.0000000000029	RNA polymerase sigma factor, sigma-70 family	N/A
structural_annotation	UHGV-1370586_14	PF16509,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-1370586_15	K01447	125.2	6.8e-37	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1370586_15	phrog_1794	131.1	1e-38	amidase	lysis
UniRef90	UHGV-1370586_15	UniRef90_A0A3D4VSU2	183.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1370586_15	411470.RUMGNA_02087	166.0	0	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1370586_15	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1370586_15	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1370586_15	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1370586_16	phrog_13256	61.9	6.3e-18	N/A	unknown function
eggNOG-mapper	UHGV-1370586_16	428125.CLOLEP_01907	76.3	1.57e-17	N/A	N/A
PHROG	UHGV-1370586_18	phrog_937	50.7	0.000000000000032	hemolysin	other
eggNOG-mapper	UHGV-1370586_18	1519439.JPJG01000023_gene533	73.6	9.2e-16	N/A	N/A
KOfam	UHGV-1370586_19	K03651	58.4	1.1e-16	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	N/A
PHROG	UHGV-1370586_19	phrog_7158	50.6	7.9e-16	N/A	unknown function
UniRef90	UHGV-1370586_19	UniRef90_A0A1E8F0N5	76.3	0.0000000000469	3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA	N/A
structural_annotation	UHGV-1370586_19	PF02368,PF09423,MF_00575,NF003743,NF005261,COG5492	N/A	N/A	N/A	N/A
KOfam	UHGV-1370586_20	K16628	106.1	1.3e-31	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-1370586_20	phrog_6320	113.8	3.6e-34	tail fiber protein	tail
eggNOG-mapper	UHGV-1370586_20	1519439.JPJG01000060_gene1892	70.9	0.000000000181	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-1370586_20	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1370586_20	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-1370586_20	PF10651,NF033814	N/A	N/A	N/A	N/A
PHROG	UHGV-1370586_24	phrog_32308	68.2	6.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-1370586_24	1235797.C816_04180	67.8	0.000000000585	N/A	N/A
structural_annotation	UHGV-1370586_24	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1370586_25	phrog_1194	80.2	2.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-1370586_25	394503.Ccel_3034	74.7	0.00000000000000119	N/A	N/A
Pfam	UHGV-1370586_25	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1370586_25	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1370586_26	phrog_1535	89.0	2.2e-29	tail length tape measure protein	tail
UniRef90	UHGV-1370586_26	UniRef90_A0A173WM72	99.8	9.15e-18	Phage-related protein	N/A
eggNOG-mapper	UHGV-1370586_26	1123263.AUKY01000015_gene1620	84.7	0.0000000000000694	Phage tail tape measure protein TP901	N/A
COG	UHGV-1370586_26	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-1370586_27	1121333.JMLH01000047_gene1011	48.9	0.00000826	N/A	N/A
UniRef90	UHGV-1370586_28	UniRef90_UPI001D0975F6	96.3	1.93e-23	N/A	N/A
eggNOG-mapper	UHGV-1370586_29	1298920.KI911353_gene2652	180.0	0	N/A	N/A
structural_annotation	UHGV-1370586_29	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370586_30	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1370586_31	476272.RUMHYD_01963	83.6	6.76e-18	N/A	N/A
eggNOG-mapper	UHGV-1370586_32	1298920.KI911353_gene2656	90.1	2.1e-21	N/A	N/A
Pfam	UHGV-1370586_33	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1370586_33	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1370586_34	phrog_544	70.2	2.3e-20	major head protein	head and packaging
eggNOG-mapper	UHGV-1370586_34	428127.EUBDOL_01555	245.0	0	N/A	N/A
structural_annotation	UHGV-1370586_34	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1370586_37	phrog_324	41.2	0.000000000018	head morphogenesis	head and packaging
UniRef90	UHGV-1370586_37	UniRef90_A0A3D3Y4T2	275.0	0	Phage_Mu_F domain-containing protein	N/A
Pfam	UHGV-1370586_37	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1370586_37	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370586_37	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1370586_38	phrog_64	211.4	0	portal protein	head and packaging
UniRef90	UHGV-1370586_38	UniRef90_A0A3D3Y472	794.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1370586_38	1123263.AUKY01000015_gene1609	379.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1370586_38	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1370586_38	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1370586_39	phrog_38	197.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-1370586_39	UniRef90_UPI000419A6BC	407.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1370586_39	1232453.BAIF02000058_gene1623	419.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-1370586_39	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1370586_39	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370586_39	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1370586_40	877421.AUJT01000054_gene66	54.3	0.000000778	N/A	N/A
Pfam	UHGV-1370586_40	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
eggNOG-mapper	UHGV-1370586_41	1280668.ATVT01000002_gene2857	60.8	0.0000000000212	N/A	N/A
structural_annotation	UHGV-1370586_41	PF10723,NF010256,COG4877	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370586_42	PF17516	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1370586_43	1232436.CAPF01000086_gene855	59.7	0.0000000245	N/A	N/A
KOfam	UHGV-1370586_46	K03466	171.4	0	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	N/A
PHROG	UHGV-1370586_46	phrog_1358	142.3	1.90016e-42	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1370586_46	UniRef90_A0A3D3Y6X7	333.0	0	FtsK domain-containing protein	N/A
eggNOG-mapper	UHGV-1370586_46	1002672.SAR11G3_00415	139.0	6.99e-35	DNA segregation ATPase FtsK SpoIIIE	N/A
PADLOC	UHGV-1370586_46	SspH_00004	72.1	4.3e-21	SspH	SSP
Pfam	UHGV-1370586_46	PF01580	N/A	N/A	FtsK/SpoIIIE family	FtsK_SpoIIIE
COG	UHGV-1370586_46	COG0733	N/A	N/A	Na+-dependent transporter, SNF family	N/A
structural_annotation	UHGV-1370586_46	PF01580,MF_00350,TIGR03925,COG4128	N/A	N/A	N/A	N/A
PHROG	UHGV-1370586_48	phrog_1770	59.1	9.3e-17	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1370586_48	536233.CLO_1822	146.0	2.18042e-42	N/A	N/A
structural_annotation	UHGV-1370586_48	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
Pfam	UHGV-1370586_49	PF04297	N/A	N/A	Putative helix-turn-helix protein, YlxM / p13 like	UPF0122
Pfam	UHGV-1370586_50	PF13556	N/A	N/A	PucR C-terminal helix-turn-helix domain	HTH_30
COG	UHGV-1370586_50	COG3835	N/A	N/A	Sugar diacid utilization regulator CdaR	N/A
structural_annotation	UHGV-1370586_51	PF10013	N/A	N/A	N/A	N/A
PHROG	UHGV-1370586_52	phrog_374	190.5	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370586_52	UniRef90_C9KJA8	180.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-1370586_52	500635.MITSMUL_03105	180.0	0	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	N/A
COG	UHGV-1370586_52	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
UniRef90	UHGV-1370586_53	UniRef90_UPI001A9B9FB4	268.0	0	FAD-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-1370586_53	1410632.JHWW01000006_gene695	192.0	0	N/A	N/A
Pfam	UHGV-1370586_53	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
structural_annotation	UHGV-1370586_53	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-1370586_54	phrog_31336	48.4	0.00000000000012	N/A	unknown function
UniRef90	UHGV-1370586_54	UniRef90_A0A5C7LKL9	74.3	0.00000000000000272	N/A	N/A
eggNOG-mapper	UHGV-1370586_54	1357732.A0A059PYA6_9CAUD	67.0	0.000000000000451	N/A	N/A
Pfam	UHGV-1370586_54	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-1370586_54	PF18909	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370586_58	PF20549,MF_00436,NF005100,COG5475	N/A	N/A	N/A	N/A
PHROG	UHGV-1370586_64	phrog_3136	147.7	2.66247e-44	N/A	unknown function
UniRef90	UHGV-1370586_64	UniRef90_UPI001C26B029	191.0	0	ASCH domain-containing protein	N/A
Pfam	UHGV-1370586_64	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-1370586_64	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1370586_64	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-1370586_67	K00390	93.7	2.3e-27	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1370586_67	phrog_424	108.2	7.7e-32	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1370586_67	UniRef90_UPI001D087498	401.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1370586_67	1408437.JNJN01000032_gene2312	313.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1370586_67	BrxP_00001	72.8	6.8e-22	BrxP	BREX
Pfam	UHGV-1370586_67	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1370586_67	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1370586_67	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1370586_69	PF07120,COG3756	N/A	N/A	N/A	N/A
KOfam	UHGV-1370586_70	K03111	128.4	9.5e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1370586_70	phrog_44	128.5	5.3e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370586_70	UniRef90_R6LLA3	167.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1370586_70	693746.OBV_19910	162.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1370586_70	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1370586_70	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1370586_70	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1370586_70	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1370586_70	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-1370586_72	UniRef90_A0A3D1LDS4	124.0	4.16e-35	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-1370586_72	445972.ANACOL_01826	98.6	5.72e-26	HNH nucleases	N/A
Pfam	UHGV-1370586_72	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-1370586_73	phrog_72	61.3	1.7e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1370586_73	UniRef90_UPI001F3F3E5C	165.0	0	recombination protein NinB	N/A
eggNOG-mapper	UHGV-1370586_73	445972.ANACOL_01825	122.0	1.53e-32	N/A	N/A
structural_annotation	UHGV-1370586_73	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1370586_74	phrog_14970	206.6	0	N/A	unknown function
UniRef90	UHGV-1370586_74	UniRef90_UPI00123F00F5	160.0	1.4013e-45	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-1370586_74	397291.C804_03856	156.0	4.06377e-44	double-strand break repair protein	N/A
Pfam	UHGV-1370586_74	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-1370586_74	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1370586_74	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1370586_77	phrog_4973	77.1	2e-22	N/A	unknown function
UniRef90	UHGV-1370586_77	UniRef90_UPI001D0904CC	95.5	2.65e-24	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1370586_77	880073.Calab_0752	58.5	0.000000000156	Helix-turn-helix domain	N/A
Pfam	UHGV-1370586_77	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1370586_77	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
UniRef90	UHGV-1370586_79	UniRef90_A0A2Z4GU98	179.0	0	Ribonuclease inhibitor	N/A
eggNOG-mapper	UHGV-1370586_79	563031.HMPREF0666_01114	83.6	3.15e-17	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1370586	Yes	44,324	52	100	1