vOTU vOTU-056671

vOTU: vOTU-056671

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-056671
Number of genomes	1
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00250 → vSUBFAM-05174 → vGENUS-10590 → vSUBGEN-14068 → vOTU-056671
Host lineage
Host range breadth
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1371109
Biosample ID	SAMN02333972
Genome length (bp)	36,815 bps
CheckV completeness	100.00% (Complete)
CDS count	54
CDS density	91.52%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1371109_1	phrog_58	70.4	8e-21	tail length tape measure protein	tail
PHROG	UHGV-1371109_4	phrog_158	40.9	0.000000000036	major tail protein	tail
eggNOG-mapper	UHGV-1371109_4	445971.ANASTE_00155	85.5	6.7e-18	regulation of response to stimulus	N/A
Pfam	UHGV-1371109_4	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
COG	UHGV-1371109_4	COG4886	N/A	N/A	Leucine-rich repeat (LRR) protein	N/A
PHROG	UHGV-1371109_6	phrog_5	50.7	0.000000000000027	tail completion or Neck1 protein	connector
eggNOG-mapper	UHGV-1371109_6	1121947.AUHK01000002_gene939	57.4	0.000000037	Bacteriophage HK97-gp10, putative tail-component	N/A
structural_annotation	UHGV-1371109_6	PF05069,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1371109_8	phrog_132	43.6	0.0000000000049	head-tail adaptor	connector
eggNOG-mapper	UHGV-1371109_8	1294142.CINTURNW_1692	50.1	0.00000215	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-1371109_8	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1371109_8	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1371109_9	phrog_422	203.9	0	major head protein	head and packaging
UniRef90	UHGV-1371109_9	UniRef90_A0A0E3JRV7	130.0	1.12e-31	N/A	N/A
eggNOG-mapper	UHGV-1371109_9	1415774.U728_1086	137.0	2.12e-35	N/A	N/A
structural_annotation	UHGV-1371109_9	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1371109_10	phrog_172	72.1	1.2e-20	head scaffolding protein	head and packaging
Pfam	UHGV-1371109_10	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1371109_10	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1371109_11	phrog_115	190.7	0	minor head protein	head and packaging
UniRef90	UHGV-1371109_11	UniRef90_A0A1Y3PH72	133.0	2.6e-32	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1371109_11	1226322.HMPREF1545_04053	110.0	4.83e-24	head morphogenesis protein, SPP1 gp7 family	N/A
Pfam	UHGV-1371109_11	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1371109_11	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1371109_11	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1371109_11	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1371109_12	phrog_64	343.5	0	portal protein	head and packaging
UniRef90	UHGV-1371109_12	UniRef90_A0A843EA50	268.0	0	Phage portal protein (Fragment)	N/A
eggNOG-mapper	UHGV-1371109_12	1140002.I570_01445	204.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1371109_12	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1371109_12	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1371109_12	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1371109_13	K06909	122.7	4e-36	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1371109_13	phrog_2	119.5	5e-35	terminase large subunit	head and packaging
UniRef90	UHGV-1371109_13	UniRef90_A0A843DZZ3	286.0	0	Terminase family protein	N/A
eggNOG-mapper	UHGV-1371109_13	411490.ANACAC_00783	231.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1371109_13	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1371109_13	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1371109_13	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1371109_13	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1371109_25	phrog_620	122.0	5.2e-36	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1371109_25	UniRef90_A0A2W3ZLF5	140.0	2.2e-39	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1371109_25	1120971.AUCA01000049_gene796	144.0	7.17e-39	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-1371109_25	MTase_II_00015	100.6	3.2e-29	Type II methyltransferase	RM
COG	UHGV-1371109_25	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1371109_25	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
KOfam	UHGV-1371109_26	K09125	162.2	0	yhhQ; queuosine precursor transporter	N/A
PHROG	UHGV-1371109_26	phrog_4899	76.8	3.6e-22	N/A	unknown function
UniRef90	UHGV-1371109_26	UniRef90_UPI00035E086A	178.0	0	queuosine precursor transporter	N/A
eggNOG-mapper	UHGV-1371109_26	420247.Msm_0646	173.0	0	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage	N/A
Pfam	UHGV-1371109_26	PF02592	N/A	N/A	Putative vitamin uptake transporter	Vut_1
NCBIFam	UHGV-1371109_26	TIGR00697.1	N/A	N/A	queuosine precursor transporter	N/A
COG	UHGV-1371109_26	COG1738	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1371109_26	PF02592,MF_02088,TIGR00697,COG1738	N/A	N/A	N/A	N/A
UniRef90	UHGV-1371109_28	UniRef90_A0A3D2D3F6	58.2	0.00000000558	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1371109_28	592010.GCWU000182_001457	53.1	0.000000086	N/A	N/A
structural_annotation	UHGV-1371109_28	PF01870,MF_01490,NF002581,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-1371109_33	phrog_434	67.1	2.6e-19	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1371109_33	UniRef90_A0A7X8QGG6	97.1	3.64e-19	YqaJ-like viral recombinase	N/A
eggNOG-mapper	UHGV-1371109_33	1236689.MMALV_09420	75.1	0.00000000000128	YqaJ-like viral recombinase domain	N/A
structural_annotation	UHGV-1371109_33	PF09588,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-1371109_35	K14440	133.7	9.7e-40	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-1371109_35	phrog_62	254.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1371109_35	UniRef90_A0A843DY29	354.0	0	DEAD/DEAH box helicase	N/A
eggNOG-mapper	UHGV-1371109_35	935948.KE386495_gene1203	162.0	1.51999e-41	SNF2 family N-terminal domain	N/A
PADLOC	UHGV-1371109_35	ZorD1_00007	53.4	8.8e-16	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-1371109_35	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1371109_35	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1371109_35	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-1371109_35	PF16203,PF04851,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
PHROG	UHGV-1371109_36	phrog_1313	225.4	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1371109_36	UniRef90_UPI001CC74094	134.0	5.01e-30	virulence-associated E family protein	N/A
eggNOG-mapper	UHGV-1371109_36	1117108.PAALTS15_09960	130.0	9.51e-29	virulence-associated E family protein	N/A
Pfam	UHGV-1371109_36	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-1371109_36	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
Pfam	UHGV-1371109_37	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
COG	UHGV-1371109_37	COG3209	N/A	N/A	N/A	N/A
PHROG	UHGV-1371109_40	phrog_16490	68.2	1.9e-19	N/A	unknown function
UniRef90	UHGV-1371109_40	UniRef90_A0A7M1RZX0	59.3	0.00000228	Spike protein/glycoprotein	N/A
eggNOG-mapper	UHGV-1371109_40	742725.HMPREF9450_02105	65.5	0.00000000337	N/A	N/A
KOfam	UHGV-1371109_45	K00986	135.3	6.50001e-40	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-1371109_45	phrog_1423	233.2	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1371109_45	UniRef90_A0A843IDA1	459.0	0	RNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-1371109_45	457424.BFAG_02440	215.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-1371109_45	icity0040	105.6	8.6e-31	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-1371109_45	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-1371109_45	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-1371109_45	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-1371109_46	phrog_5302	158.0	0	tail protein	tail
UniRef90	UHGV-1371109_46	UniRef90_A0A388TCL1	190.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1371109_46	1243664.CAVL020000054_gene3009	147.0	1.32e-34	N/A	N/A
structural_annotation	UHGV-1371109_46	PF03781,COG1262	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1371109_49	476272.RUMHYD_02869	48.1	0.00000455	N/A	N/A
structural_annotation	UHGV-1371109_49	PF07703,TIGR02657,COG2372	N/A	N/A	N/A	N/A
Pfam	UHGV-1371109_50	PF13754	N/A	N/A	N/A	Big_3_4
KOfam	UHGV-1371109_51	K01361	49.4	0.000000000000029	E3.4.21.96; lactocepin [EC:3.4.21.96]	N/A
PHROG	UHGV-1371109_51	phrog_11157	165.4	0	N/A	unknown function
UniRef90	UHGV-1371109_51	UniRef90_A0A843IMB0	229.0	0	Ig-like domain repeat protein	N/A
eggNOG-mapper	UHGV-1371109_51	33035.JPJF01000023_gene3227	235.0	0	N/A	N/A
Pfam	UHGV-1371109_51	PF19077	N/A	N/A	Bacterial Ig-like domain	Big_13
Pfam	UHGV-1371109_51	PF09136	N/A	N/A	Glucodextranase, domain B	Glucodextran_B
COG	UHGV-1371109_51	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-1371109_51	PF09136,PF13205,PF13754,MF_04116,NF032891,COG2372,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-1371109_52	phrog_13879	87.2	1.8e-37	N/A	unknown function
eggNOG-mapper	UHGV-1371109_52	645991.Sgly_0356	74.3	0.0000000000335	N/A	N/A
PHROG	UHGV-1371109_53	phrog_1194	58.6	1.1e-16	N/A	unknown function
eggNOG-mapper	UHGV-1371109_53	324057.Pjdr2_1553	61.6	0.000000000125	N/A	N/A
structural_annotation	UHGV-1371109_53	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1371109_54	phrog_1535	64.4	1.2e-18	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1371109_54	1232443.BAIA02000078_gene18	66.6	0.000000000376	phage tail tape measure protein	N/A
COG	UHGV-1371109_54	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1371109_54	PF11177	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1371109	Yes	36,815	57	100	1