vOTU vOTU-056898

vOTU: vOTU-056898

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-056898
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-01661 → vGENUS-01743 → vSUBGEN-42705 → vOTU-056898
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae
Host range breadth	Family
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1372046
Biosample ID	N/A
Genome length (bp)	36,090 bps
CheckV completeness	100.00% (Complete)
CDS count	60
CDS density	91.07%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	9	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1372046_1	K00558	126.1	2.5e-37	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1372046_1	phrog_363	170.6	0	DNA methyltransferase	other
UniRef90	UHGV-1372046_1	UniRef90_A0A1Y4M5E8	234.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-1372046_1	693746.OBV_01900	241.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1372046_1	MTase_II_00058	112.0	1.2e-32	Type II methyltransferase	RM
Pfam	UHGV-1372046_1	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1372046_1	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1372046_1	PF13847,MF_00351,NF000468,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-1372046_2	phrog_15768	69.7	4.5e-21	N/A	unknown function
UniRef90	UHGV-1372046_2	UniRef90_A0A0J9CGG0	99.0	5.16e-21	N/A	N/A
eggNOG-mapper	UHGV-1372046_2	1121344.JHZO01000003_gene982	124.0	1.23e-31	N/A	N/A
AcrCatalog	UHGV-1372046_2	cluster_14472	74.7	1.96e-17	NA	N/A
Pfam	UHGV-1372046_2	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1372046_2	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-1372046_3	phrog_4973	64.6	1.5e-18	N/A	unknown function
UniRef90	UHGV-1372046_3	UniRef90_A0A3D3Y0P8	165.0	0	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1372046_3	935261.JAGL01000009_gene1175	50.8	0.000000189	Helix-turn-helix domain	N/A
Pfam	UHGV-1372046_3	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1372046_3	PF14090,MF_01586,TIGR00373,COG5625	N/A	N/A	N/A	N/A
PHROG	UHGV-1372046_4	phrog_236	82.3	1.2e-23	nucleotide kinase	other
UniRef90	UHGV-1372046_4	UniRef90_A0A417H6U1	88.6	1.79e-21	N/A	N/A
eggNOG-mapper	UHGV-1372046_4	1200557.JHWV01000001_gene285	80.5	1.6e-17	N/A	N/A
Pfam	UHGV-1372046_4	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-1372046_4	PF11753	N/A	N/A	N/A	N/A
PHROG	UHGV-1372046_6	phrog_2245	83.6	2.4e-24	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-1372046_6	UniRef90_A0A4U9RLZ8	69.3	0.00000000000039	N/A	N/A
eggNOG-mapper	UHGV-1372046_6	428125.CLOLEP_01814	69.7	0.00000000000014	COG NOG14118 non supervised orthologous group	N/A
structural_annotation	UHGV-1372046_6	PF01503,MF_01019,NF001613,COG0140	N/A	N/A	N/A	N/A
PHROG	UHGV-1372046_7	phrog_244	81.4	1.4e-23	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1372046_7	UniRef90_A0A841R0Q1	120.0	4.88e-33	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-1372046_7	1280692.AUJL01000044_gene2344	120.0	1.09e-33	N/A	N/A
structural_annotation	UHGV-1372046_7	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-1372046_8	phrog_1029	144.0	7.80523e-43	N/A	unknown function
eggNOG-mapper	UHGV-1372046_8	1203606.HMPREF1526_01890	140.0	3.19e-38	N/A	N/A
structural_annotation	UHGV-1372046_8	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-1372046_9	phrog_997	121.1	6.4e-36	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1372046_9	UniRef90_R6MCS9	101.0	1.97e-25	N/A	N/A
eggNOG-mapper	UHGV-1372046_9	1519439.JPJG01000059_gene1910	146.0	9.24857e-44	N/A	N/A
KOfam	UHGV-1372046_10	K03111	147.4	1.4013e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1372046_10	phrog_44	148.9	2.66247e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1372046_10	UniRef90_A0A3D3Y0K5	281.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1372046_10	411467.BACCAP_02389	172.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1372046_10	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1372046_10	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1372046_10	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1372046_10	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1372046_10	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1372046_11	phrog_4433	124.6	0	N/A	unknown function
eggNOG-mapper	UHGV-1372046_11	573061.Clocel_3578	82.8	0.00000000000000346	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1372046_11	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1372046_11	NF007410	N/A	N/A	N/A	N/A
KOfam	UHGV-1372046_12	K07455	295.0	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1372046_12	phrog_148	275.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1372046_12	UniRef90_A0A3D3Y007	522.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-1372046_12	1226322.HMPREF1545_00015	348.0	0	RecT family	N/A
Pfam	UHGV-1372046_12	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1372046_12	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1372046_12	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1372046_12	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1372046_13	phrog_434	315.1	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1372046_13	UniRef90_A0A3D3XZF3	621.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1372046_13	1121344.JHZO01000003_gene985	293.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1372046_13	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1372046_13	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1372046_13	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1372046_13	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372046_14	PF00412	N/A	N/A	N/A	N/A
UniRef90	UHGV-1372046_18	UniRef90_A0A8D9PDM8	65.9	0.00000000000092	Pyocin activator protein	N/A
structural_annotation	UHGV-1372046_18	PF11112,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-1372046_19	UniRef90_A0A1C7FQD9	84.3	6.68e-20	Transcriptional regulator	N/A
structural_annotation	UHGV-1372046_19	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1372046_20	phrog_8	51.9	0.000000000000019	transcriptional regulator	transcription regulation
UniRef90	UHGV-1372046_20	UniRef90_UPI000B35D4B7	63.5	0.0000000001	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1372046_20	742738.HMPREF9460_02485	49.7	0.00000422	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1372046_20	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1372046_20	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1372046_20	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372046_21	PF09202,MF_01177,TIGR02702,COG1846	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1372046_23	218140.BPSY_1280	48.1	0.0000033	N/A	N/A
structural_annotation	UHGV-1372046_23	TIGR04165,COG3478	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372046_25	PF00356,TIGR02684,COG3636	N/A	N/A	N/A	N/A
KOfam	UHGV-1372046_26	K14059	138.1	9.60002e-41	int; integrase	N/A
PHROG	UHGV-1372046_26	phrog_1	137.3	1.50001e-40	integrase	integration and excision
UniRef90	UHGV-1372046_26	UniRef90_A0A3D3Y0G6	711.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1372046_26	445972.ANACOL_01797	302.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1372046_26	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-1372046_26	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1372046_26	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1372046_26	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-1372046_28	UniRef90_A0A843GWV6	114.0	8.02e-31	Rubrerythrin domain-containing protein	N/A
structural_annotation	UHGV-1372046_29	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1372046_30	phrog_16490	58.9	1.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-1372046_30	397290.C810_05212	66.2	0.000000000303	N/A	N/A
PHROG	UHGV-1372046_31	phrog_22984	51.2	0.000000000000023	N/A	unknown function
PHROG	UHGV-1372046_33	phrog_1794	82.7	5.3e-24	amidase	lysis
UniRef90	UHGV-1372046_33	UniRef90_A0A3D3XYT3	542.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-1372046_33	658088.HMPREF0987_01102	184.0	0	Ami_2	N/A
Pfam	UHGV-1372046_33	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1372046_33	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1372046_33	PF01510,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1372046_34	phrog_1129	71.1	1.1e-20	holin	lysis
UniRef90	UHGV-1372046_34	UniRef90_A0A3D3Y028	181.0	0	Holin	N/A
eggNOG-mapper	UHGV-1372046_34	742733.HMPREF9469_00939	94.0	4.3e-24	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1372046_34	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1372046_34	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1372046_36	phrog_3558	365.0	0	tail protein	tail
UniRef90	UHGV-1372046_36	UniRef90_A0A3D3Y0H5	1140.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1372046_36	411465.PEPMIC_00746	211.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1372046_36	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-1372046_36	PF03406	N/A	N/A	Phage tail fibre repeat	Phage_fiber_2
NCBIFam	UHGV-1372046_36	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1372046_36	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1372046_36	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1372046_37	862969.SCI_1226	62.0	0.0000000275	N/A	N/A
structural_annotation	UHGV-1372046_37	PF05709,PF21621,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1372046_38	K16808	47.2	0.00000000000001	NUMA1; nuclear mitotic apparatus protein 1	N/A
PHROG	UHGV-1372046_38	phrog_6900	263.5	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1372046_38	1499683.CCFF01000017_gene2565	267.0	0	tape measure	N/A
COG	UHGV-1372046_38	COG1511	N/A	N/A	N/A	N/A
UniRef90	UHGV-1372046_39	UniRef90_A0A285PXU7	73.9	0.0000000000000296	Consensus disorder prediction	N/A
PHROG	UHGV-1372046_40	phrog_885	87.5	1.3e-25	major tail protein	tail
UniRef90	UHGV-1372046_40	UniRef90_A0A843J9F0	213.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1372046_40	1504822.CCNO01000012_gene492	228.0	0	N/A	N/A
structural_annotation	UHGV-1372046_40	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1372046_41	phrog_17405	42.0	0.000000000015	head protein	head and packaging
UniRef90	UHGV-1372046_41	UniRef90_A0A415JI88	116.0	2.67e-31	N/A	N/A
structural_annotation	UHGV-1372046_41	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-1372046_42	phrog_17977	75.6	4.8e-22	N/A	unknown function
UniRef90	UHGV-1372046_42	UniRef90_UPI00141211AB	101.0	2.28e-25	head-tail adaptor protein	N/A
structural_annotation	UHGV-1372046_42	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1372046_44	phrog_267	200.2	0	major head protein	head and packaging
UniRef90	UHGV-1372046_44	UniRef90_UPI001F06E68A	262.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-1372046_44	877414.ATWA01000001_gene909	265.0	0	P22 coat protein-protein 5 domain protein	N/A
structural_annotation	UHGV-1372046_44	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-1372046_45	UniRef90_A0A6B9SU02	74.3	0.000000000000571	Fibronectin autolysin	N/A
structural_annotation	UHGV-1372046_45	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1372046_46	phrog_5	72.9	5.4e-21	tail completion or Neck1 protein	connector
UniRef90	UHGV-1372046_46	UniRef90_A0A7X5E1T2	196.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1372046_46	1280685.AUKC01000004_gene1630	102.0	3.63e-26	N/A	N/A
Pfam	UHGV-1372046_46	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1372046_46	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1372046_49	phrog_3675	41.9	0.000000000012	N/A	unknown function
Pfam	UHGV-1372046_49	PF09639	N/A	N/A	YjcQ protein	YjcQ
PHROG	UHGV-1372046_51	phrog_115	124.7	2.7e-37	minor head protein	head and packaging
UniRef90	UHGV-1372046_51	UniRef90_A0A3D3Y165	632.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1372046_51	1504822.CCNO01000013_gene286	189.0	0	cell adhesion	N/A
Pfam	UHGV-1372046_51	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
NCBIFam	UHGV-1372046_51	TIGR01641.1	N/A	N/A	minor capsid protein	N/A
COG	UHGV-1372046_51	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1372046_51	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1372046_52	phrog_64	160.9	0	portal protein	head and packaging
UniRef90	UHGV-1372046_52	UniRef90_UPI0018A8A301	612.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-1372046_52	1235800.C819_02239	85.9	0.00000000000000408	phage portal protein, SPP1	N/A
Pfam	UHGV-1372046_52	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1372046_52	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1372046_53	K06909	140.4	1.70006e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1372046_53	phrog_10250	165.4	0	N/A	unknown function
UniRef90	UHGV-1372046_53	UniRef90_A0A3D3Y0N9	615.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1372046_53	1226322.HMPREF1545_00043	465.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-1372046_53	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-1372046_53	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1372046_53	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1372046_53	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1372046_54	phrog_606	81.8	9.2e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1372046_54	UniRef90_UPI00195648BB	166.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1372046_54	397290.C810_05185	140.0	2.98e-40	DNA-packaging protein gp3	N/A
Pfam	UHGV-1372046_54	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1372046_54	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-1372046_55	phrog_36	54.5	0.0000000000000024	transcriptional regulator	transcription regulation
UniRef90	UHGV-1372046_55	UniRef90_UPI001D0837DD	135.0	4.73e-38	N/A	N/A
eggNOG-mapper	UHGV-1372046_55	428125.CLOLEP_01806	90.9	3.4e-21	N/A	N/A
structural_annotation	UHGV-1372046_55	PF07374,TIGR01636	N/A	N/A	N/A	N/A
UniRef90	UHGV-1372046_57	UniRef90_A0A8D9PDQ6	141.0	8.82818e-43	Restriction alleviation protein	N/A
structural_annotation	UHGV-1372046_57	TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1372046_58	phrog_38832	46.2	0.00000000000062	N/A	unknown function
structural_annotation	UHGV-1372046_58	PF10781	N/A	N/A	N/A	N/A
UniRef90	UHGV-1372046_59	UniRef90_A0A8D9PDT5	61.2	0.000000000545	Hydrogenase/urease nickel incorporation protein	N/A
PHROG	UHGV-1372046_60	phrog_363	51.9	0.0000000000000096	DNA methyltransferase	other
UniRef90	UHGV-1372046_60	UniRef90_G4KRB8	82.4	0.00000000000000383	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-1372046_60	693746.OBV_01900	82.4	6.42e-16	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
COG	UHGV-1372046_60	COG0270	N/A	N/A	DNA-cytosine methylase	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1372046	Yes	36,090	55	100	1
UHGV-0139765	No	15,909	55	44	1
UHGV-1808403	No	15,909	55	44	1