vOTU vOTU-057390

vOTU: vOTU-057390

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-057390
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00027 → vSUBFAM-02870 → vGENUS-13328 → vSUBGEN-21311 → vOTU-057390
Host lineage	Bacteria → Actinobacteriota
Host range breadth	Phylum
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0390695
Biosample ID	N/A
Genome length (bp)	48,206 bps
CheckV completeness	100.00% (Complete)
CDS count	64
CDS density	95.12%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Actinobacteriota	Total connections	14	Host agreement	57.14
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0390695_2	742742.HMPREF9452_01289	68.9	0.000000000116	Collagen triple helix repeat (20 copies)	N/A
COG	UHGV-0390695_2	COG3266	N/A	N/A	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	N/A
UniRef90	UHGV-0390695_4	UniRef90_A0A414EUJ7	155.0	1.7236e-43	Peptidase_C39_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0390695_4	883113.HMPREF9708_01498	57.4	0.000000524	Papain-like cysteine protease AvrRpt2	N/A
Pfam	UHGV-0390695_4	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
COG	UHGV-0390695_4	COG3271	N/A	N/A	Predicted double-glycine leader peptidase, C39-like (CLD) domain	N/A
structural_annotation	UHGV-0390695_4	PF03412,NF033920,COG3271	N/A	N/A	N/A	N/A
KOfam	UHGV-0390695_5	K06909	299.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0390695_5	phrog_3717	129.2	2.24208e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0390695_5	UniRef90_A0A349YI29	600.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0390695_5	1051501.AYTL01000027_gene835	442.0	0	phage terminase, large subunit	N/A
Pfam	UHGV-0390695_5	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0390695_5	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0390695_5	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0390695_5	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0390695_5	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0390695_6	phrog_309	101.5	1.6e-30	terminase small subunit	head and packaging
UniRef90	UHGV-0390695_6	UniRef90_A0A843GSL4	102.0	2.44e-23	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0390695_6	1118057.CAGX01000020_gene1623	93.2	7.32e-21	transposase activity	N/A
COG	UHGV-0390695_6	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0390695_6	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0390695_13	K03469	154.5	1.4013e-45	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0390695_13	phrog_531	138.1	4.30002e-41	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0390695_13	UniRef90_A0A7X8ZT42	139.0	4.06e-39	Ribonuclease H	N/A
eggNOG-mapper	UHGV-0390695_13	1123388.AQWU01000067_gene621	124.0	1.49e-33	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0390695_13	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0390695_13	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0390695_13	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
KOfam	UHGV-0390695_15	K01520	128.3	7e-38	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0390695_15	phrog_135	124.2	7.3e-37	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0390695_15	UniRef90_A0A7Y2A3Y6	124.0	2.76e-33	Deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-0390695_15	397291.C804_00898	112.0	1.43e-29	dUTPase	N/A
Pfam	UHGV-0390695_15	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0390695_15	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0390695_15	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0390695_15	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
KOfam	UHGV-0390695_16	K03465	207.5	0	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0390695_16	phrog_85	145.4	2.90069e-43	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0390695_16	UniRef90_A0A353SRY3	163.0	0	Flavin-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-0390695_16	243231.GSU3106	151.0	3.11088e-43	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-0390695_16	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-0390695_16	TIGR02170.1	N/A	N/A	FAD-dependent thymidylate synthase	N/A
COG	UHGV-0390695_16	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
HAMAP	UHGV-0390695_16	MF_01408	N/A	N/A	Flavin-dependent thymidylate synthase [thyX]	N/A
structural_annotation	UHGV-0390695_16	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0390695_19	PF21138,NF009630,COG2375	N/A	N/A	N/A	N/A
PHROG	UHGV-0390695_20	phrog_2002	54.7	0.000000000000001	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0390695_20	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0390695_24	PF03891	N/A	N/A	N/A	N/A
PHROG	UHGV-0390695_25	phrog_159	47.7	0.00000000000015	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0390695_25	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-0390695_26	phrog_1990	83.2	3e-24	Cas4-domain exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0390695_26	UniRef90_UPI00082A22B0	60.1	0.00000069	PD-(D/E)XK nuclease family protein	N/A
eggNOG-mapper	UHGV-0390695_26	1499968.TCA2_4616	66.6	0.000000000656	DNA catabolic process, exonucleolytic	N/A
COG	UHGV-0390695_26	COG1468	N/A	N/A	CRISPR/Cas system-associated exonuclease Cas4, RecB family	N/A
structural_annotation	UHGV-0390695_26	PF01930,MF_03030,TIGR00372,COG5377	N/A	N/A	N/A	N/A
Pfam	UHGV-0390695_27	PF07934	N/A	N/A	8-oxoguanine DNA glycosylase, N-terminal domain	OGG_N
COG	UHGV-0390695_27	COG0122	N/A	N/A	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	N/A
structural_annotation	UHGV-0390695_27	PF07934,PF00730,MF_00942,TIGR00588,COG0122	N/A	N/A	N/A	N/A
PHROG	UHGV-0390695_28	phrog_1689	48.2	0.00000000000027	nucleotide kinase	other
Pfam	UHGV-0390695_28	PF11753	N/A	N/A	N/A	DUF3310
KOfam	UHGV-0390695_29	K03553	169.3	0	recA; recombination protein RecA	N/A
PHROG	UHGV-0390695_29	phrog_97	172.2	0	UvsX-like recombinase	other
UniRef90	UHGV-0390695_29	UniRef90_A0A843GSV7	348.0	0	RECA_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0390695_29	469616.FMAG_01147	144.0	2.53e-37	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	N/A
Pfam	UHGV-0390695_29	PF00154	N/A	N/A	recA bacterial DNA recombination protein	RecA
COG	UHGV-0390695_29	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0390695_29	PF00154,MF_00268,TIGR02012,COG0468	N/A	N/A	N/A	N/A
KOfam	UHGV-0390695_31	K02337	713.0	0	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	N/A
PHROG	UHGV-0390695_31	phrog_405	670.0	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0390695_31	UniRef90_A0A843GPT9	1111.0	0	DNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0390695_31	204536.SULAZ_0041	434.0	0	TIGRFAM DNA polymerase III, alpha subunit	N/A
Pfam	UHGV-0390695_31	PF02811	N/A	N/A	PHP domain	PHP
Pfam	UHGV-0390695_31	PF07733	N/A	N/A	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
Pfam	UHGV-0390695_31	PF17657	N/A	N/A	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
Pfam	UHGV-0390695_31	PF14579	N/A	N/A	Helix-hairpin-helix motif	HHH_6
NCBIFam	UHGV-0390695_31	TIGR00594.1	N/A	N/A	DNA polymerase III subunit alpha	N/A
COG	UHGV-0390695_31	COG0587	N/A	N/A	DNA polymerase III, alpha subunit	N/A
structural_annotation	UHGV-0390695_31	PF07733,PF02811,PF17657,PF14579,MF_01902,TIGR00594,COG0587	N/A	N/A	N/A	N/A
KOfam	UHGV-0390695_32	K00560	135.7	3.4e-40	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	N/A
PHROG	UHGV-0390695_32	phrog_5131	160.5	0	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0390695_32	UniRef90_UPI00123B0758	167.0	0	thymidylate synthase	N/A
eggNOG-mapper	UHGV-0390695_32	536232.CLM_0918	138.0	1.09e-36	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis	N/A
Pfam	UHGV-0390695_32	PF00303	N/A	N/A	Thymidylate synthase	Thymidylat_synt
COG	UHGV-0390695_32	COG0207	N/A	N/A	Thymidylate synthase	N/A
structural_annotation	UHGV-0390695_32	PF00303,MF_01686,NF002497,COG0207	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0390695_33	1136417.AZWE01000077_gene280	92.4	5.86e-18	N/A	N/A
structural_annotation	UHGV-0390695_33	PF20706,MF_01695,NF041010,COG0438	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0390695_34	PF07429,MF_01002,NF002752,COG1819	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0390695_36	PF12643,MF_01020,TIGR03188,COG0140	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0390695_37	PF08804	N/A	N/A	N/A	N/A
KOfam	UHGV-0390695_38	K02316	108.5	5.9e-32	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0390695_38	phrog_47	109.9	2.7e-32	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0390695_38	UniRef90_A0A843GN62	270.0	0	Toprim domain-containing protein	N/A
eggNOG-mapper	UHGV-0390695_38	869210.Marky_0889	82.8	0.00000000000000722	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	N/A
Pfam	UHGV-0390695_38	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
Pfam	UHGV-0390695_38	PF13155	N/A	N/A	Toprim-like	Toprim_2
COG	UHGV-0390695_38	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0390695_38	PF01807,PF13155,MF_00974,TIGR01391,COG0358	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0390695_40	PF18340,MF_00754,NF037951,COG1862	N/A	N/A	N/A	N/A
Pfam	UHGV-0390695_42	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
UniRef90	UHGV-0390695_43	UniRef90_A0A0H2PPL5	93.6	3.39e-20	Trascriptional regulator	N/A
PHROG	UHGV-0390695_44	phrog_5555	132.5	2.5e-39	tail protein	tail
UniRef90	UHGV-0390695_44	UniRef90_UPI001EE851DD	322.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0390695_44	1347392.CCEZ01000045_gene1	127.0	2.42e-27	Phage minor structural protein	N/A
Pfam	UHGV-0390695_44	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0390695_44	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0390695_44	COG4926	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0390695_45	phrog_33	42.4	0.00000000001	distal tail protein Dit	tail
structural_annotation	UHGV-0390695_45	PF20753,PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0390695_46	phrog_58	300.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0390695_46	UniRef90_A0A1Q6E4K3	216.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0390695_46	445975.COLSTE_01102	259.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0390695_46	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0390695_46	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0390695_46	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0390695_46	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0390695_47	phrog_6280	119.8	1.5e-35	N/A	unknown function
UniRef90	UHGV-0390695_47	UniRef90_A0A8J6PH67	102.0	3.95e-25	Esterase	N/A
eggNOG-mapper	UHGV-0390695_47	445335.CBN_3078	105.0	5.45e-27	N/A	N/A
PHROG	UHGV-0390695_48	phrog_6686	140.0	1.19993e-41	tail tube protein	tail
UniRef90	UHGV-0390695_48	UniRef90_A0A1C6KI12	165.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0390695_48	871584.D9ZNE2_9CAUD	101.0	4.59e-24	N/A	N/A
structural_annotation	UHGV-0390695_48	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0390695_49	phrog_7585	97.5	1e-28	N/A	unknown function
eggNOG-mapper	UHGV-0390695_49	1304880.JAGB01000002_gene2212	61.2	0.000000000217	N/A	N/A
structural_annotation	UHGV-0390695_49	PF05657,COG5003	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0390695_50	1443125.Z962_p0058	74.3	0.00000000000000203	N/A	N/A
structural_annotation	UHGV-0390695_50	PF04883,TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0390695_51	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0390695_52	phrog_4020	51.2	0.000000000000018	N/A	unknown function
PHROG	UHGV-0390695_54	phrog_29	257.9	0	major head protein	head and packaging
UniRef90	UHGV-0390695_54	UniRef90_UPI00082C04A5	381.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0390695_54	1158612.I580_01912	320.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0390695_54	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0390695_54	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0390695_55	phrog_909	50.4	0.000000000000036	major head protein	head and packaging
eggNOG-mapper	UHGV-0390695_55	1158612.I580_01911	82.0	2.18e-18	N/A	N/A
structural_annotation	UHGV-0390695_55	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0390695_56	phrog_2303	59.5	6.4e-17	head scaffolding protein	head and packaging
structural_annotation	UHGV-0390695_57	PF06133	N/A	N/A	N/A	N/A
KOfam	UHGV-0390695_58	K05521	202.9	0	draG; ADP-ribosyl-[dinitrogen reductase] hydrolase [EC:3.2.2.24]	N/A
PHROG	UHGV-0390695_58	phrog_6572	94.8	1.6e-41	ADP-ribosylglycohydrolase	other
UniRef90	UHGV-0390695_58	UniRef90_A0A095XFD7	255.0	0	Adhesin	N/A
eggNOG-mapper	UHGV-0390695_58	411465.PEPMIC_00852	249.0	0	ADP-ribosylglycohydrolase	N/A
Pfam	UHGV-0390695_58	PF03747	N/A	N/A	ADP-ribosylglycohydrolase	ADP_ribosyl_GH
COG	UHGV-0390695_58	COG1397	N/A	N/A	ADP-ribosylglycohydrolase	N/A
structural_annotation	UHGV-0390695_58	PF03747,NF041672,COG1397	N/A	N/A	N/A	N/A
PHROG	UHGV-0390695_60	phrog_1657	129.2	4.3e-38	head morphogenesis	head and packaging
eggNOG-mapper	UHGV-0390695_60	748727.CLJU_c31360	135.0	8.51e-31	Portal protein	N/A
Pfam	UHGV-0390695_60	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
COG	UHGV-0390695_60	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0390695_60	PF03496,NF040688	N/A	N/A	N/A	N/A
PHROG	UHGV-0390695_61	phrog_64	130.6	8.7e-39	portal protein	head and packaging
UniRef90	UHGV-0390695_61	UniRef90_A0A843GSM3	392.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0390695_61	1121342.AUCO01000012_gene1700	151.0	2.93e-37	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0390695_61	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0390695_61	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0390695_62	K07273	141.5	6.89999e-42	acm; lysozyme	N/A
PHROG	UHGV-0390695_62	phrog_291	137.8	8.19998e-41	endolysin	lysis
UniRef90	UHGV-0390695_62	UniRef90_B6GAI8	303.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0390695_62	445975.COLSTE_01088	303.0	0	lysozyme activity	N/A
Pfam	UHGV-0390695_62	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0390695_62	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-0390695_62	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0390695_62	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0390695_62	PF01183,PF01476,TIGR02899,COG3757,COG1388	N/A	N/A	N/A	N/A
PHROG	UHGV-0390695_63	phrog_443	63.7	4.5e-18	holin	lysis
UniRef90	UHGV-0390695_63	UniRef90_UPI0003F8D3E5	98.6	1.87e-25	holin	N/A
eggNOG-mapper	UHGV-0390695_63	1123263.AUKY01000015_gene1627	77.0	1.18e-17	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0390695_63	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0390695_63	PF16945	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0390695	Yes	48,206	47	100	1
UHGV-0144527	No	48,206	47	100	1
UHGV-1374343	No	48,206	47	100	1