vOTU vOTU-057556

vOTU: vOTU-057556

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-057556
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-02248 → vGENUS-02649 → vSUBGEN-28357 → vOTU-057556
Host lineage	Bacteria → Firmicutes_A
Host range breadth	Phylum
Lifestyle	temperate (Evidence: integrase)

Representative genome
Genome ID	UHGV-0148273
Biosample ID	SAMN06016403
Genome length (bp)	36,744 bps
CheckV completeness	100.00% (Complete)
CDS count	66
CDS density	91.48%
tRNA count	3
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A	Total connections	4	Host agreement	50
PHIST-predicted host lineage	Bacteria → Firmicutes_A	Total connections	2	Host agreement	50

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0148273_1	phrog_24267	48.5	0.00000000000016	N/A	unknown function
eggNOG-mapper	UHGV-0148273_1	936154.STP_0845	56.2	0.0000000451	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-0148273_1	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0148273_2	phrog_24267	73.4	4.3e-21	N/A	unknown function
UniRef90	UHGV-0148273_2	UniRef90_R5LPM8	58.5	0.00000000498	Putative truncated prophage LambdaSa1 minor structural protein	N/A
eggNOG-mapper	UHGV-0148273_2	873448.STRPO_0075	84.0	8.61e-18	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-0148273_2	COG4675	N/A	N/A	Phage tail collar domain	N/A
KOfam	UHGV-0148273_4	K14059	198.7	0	int; integrase	N/A
PHROG	UHGV-0148273_4	phrog_1	160.8	0	integrase	integration and excision
UniRef90	UHGV-0148273_4	UniRef90_A0A3E3DYG7	483.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0148273_4	1235796.C815_00904	389.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0148273_4	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0148273_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0148273_4	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0148273_4	PF00589,PF13102,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0148273_5	phrog_27545	66.2	3.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-0148273_5	1122971.BAME01000151_gene6566	77.0	0.0000000000000383	N/A	N/A
PHROG	UHGV-0148273_6	phrog_199	63.8	2.3e-18	holin	lysis
UniRef90	UHGV-0148273_6	UniRef90_A0A1Y4LTY3	278.0	0	Holin	N/A
eggNOG-mapper	UHGV-0148273_6	908340.HMPREF9406_0810	226.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0148273_6	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0148273_6	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-0148273_6	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0148273_7	K07273	135.8	4.6e-40	acm; lysozyme	N/A
PHROG	UHGV-0148273_7	phrog_291	114.9	7.8e-34	endolysin	lysis
UniRef90	UHGV-0148273_7	UniRef90_UPI001C395B9C	306.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0148273_7	1235796.C815_01769	212.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0148273_7	PF05257	N/A	N/A	CHAP domain	CHAP
Pfam	UHGV-0148273_7	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0148273_7	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0148273_7	PF01183,PF08460,PF00877,NF040675,COG3757	N/A	N/A	N/A	N/A
UniRef90	UHGV-0148273_9	UniRef90_A0A1C5N8K3	71.2	0.0000000000000136	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0148273_9	97138.C820_01991	65.5	0.000000000000403	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0148273_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
AcrCatalog	UHGV-0148273_10	cluster_86620	32.7	0.00000821	NA	N/A
KOfam	UHGV-0148273_13	K06400	303.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0148273_13	phrog_95	295.2	0	integrase	integration and excision
UniRef90	UHGV-0148273_13	UniRef90_UPI00189B90C5	273.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0148273_13	357809.Cphy_2997	229.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-0148273_13	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0148273_13	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0148273_13	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0148273_13	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0148273_13	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0148273_15	K01356	126.5	3.7e-37	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0148273_15	phrog_4	113.7	2.2e-33	transcriptional repressor	transcription regulation
UniRef90	UHGV-0148273_15	UniRef90_A0A1Y4LWN9	406.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0148273_15	1232446.BAIE02000016_gene1347	145.0	1.79e-40	PFAM peptidase	N/A
Pfam	UHGV-0148273_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0148273_15	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0148273_15	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0148273_15	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0148273_16	UniRef90_A0A135YRD0	52.0	0.000000298	HTH_8 domain-containing protein	N/A
KOfam	UHGV-0148273_17	K07729	46.1	0.0000000000011	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0148273_17	phrog_8	44.1	0.0000000000052	transcriptional regulator	transcription regulation
UniRef90	UHGV-0148273_17	UniRef90_UPI001D01DA20	82.0	3.31e-19	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0148273_17	272563.CD630_09071	68.6	0.00000000000000776	sequence-specific DNA binding	N/A
PADLOC	UHGV-0148273_17	retron_type_VI_hth_cluster2_1	45.3	0.000000000003	N/A	Retron
Pfam	UHGV-0148273_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0148273_17	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
structural_annotation	UHGV-0148273_17	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0148273_21	phrog_9607	49.5	0.000000000000075	N/A	unknown function
PHROG	UHGV-0148273_27	phrog_15768	95.1	9.8e-28	N/A	unknown function
UniRef90	UHGV-0148273_27	UniRef90_UPI000F8C6244	76.6	0.000000000000378	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0148273_27	203119.Cthe_2466	95.1	5.63e-20	N/A	N/A
Pfam	UHGV-0148273_27	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
structural_annotation	UHGV-0148273_27	PF20024,MF_01819,NF038251,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0148273_28	K02314	151.1	8.40779e-45	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0148273_28	phrog_19	179.4	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0148273_28	UniRef90_A0A223MJF7	271.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0148273_28	1232449.BAHV02000016_gene1835	219.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0148273_28	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0148273_28	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0148273_28	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0148273_30	K04763	164.1	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0148273_30	phrog_1	129.0	5.2e-38	integrase	integration and excision
UniRef90	UHGV-0148273_30	UniRef90_A0A395W9T7	303.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0148273_30	999413.HMPREF1094_02021	192.0	0	Phage integrase family	N/A
Pfam	UHGV-0148273_30	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0148273_30	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0148273_30	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0148273_33	phrog_7711	132.5	1.8e-39	N/A	unknown function
UniRef90	UHGV-0148273_33	UniRef90_UPI001C38CAD2	144.0	5.35002e-41	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-0148273_33	1304866.K413DRAFT_1204	109.0	4.27e-29	N/A	N/A
eggNOG-mapper	UHGV-0148273_34	645991.Sgly_0337	70.5	0.00000000000000974	N/A	N/A
structural_annotation	UHGV-0148273_35	PF01104,NF041014	N/A	N/A	N/A	N/A
PHROG	UHGV-0148273_40	phrog_36	40.5	0.000000000047	transcriptional regulator	transcription regulation
Pfam	UHGV-0148273_40	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0148273_40	PF07374,NF008895	N/A	N/A	N/A	N/A
UniRef90	UHGV-0148273_42	UniRef90_A0A3E3ADS4	119.0	2.83e-33	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0148273_42	1232446.BAIE02000002_gene820	119.0	4.74e-34	HNH nucleases	N/A
COG	UHGV-0148273_42	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-0148273_44	UniRef90_A0A3E3E594	134.0	1.64e-38	Terminase	N/A
eggNOG-mapper	UHGV-0148273_44	1235798.C817_04581	84.0	2.95e-19	Phage terminase, small subunit	N/A
Pfam	UHGV-0148273_44	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
PHROG	UHGV-0148273_45	phrog_9	306.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0148273_45	UniRef90_A0A1Y4LY94	1164.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0148273_45	1232446.BAIE02000002_gene823	899.0	0	Phage Terminase	N/A
Pfam	UHGV-0148273_45	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0148273_45	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0148273_45	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0148273_45	PF20441,PF03354,MF_04013,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0148273_46	phrog_12	171.7	0	portal protein	head and packaging
UniRef90	UHGV-0148273_46	UniRef90_A0A1Y4M075	785.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0148273_46	1232446.BAIE02000002_gene824	547.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0148273_46	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0148273_46	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0148273_46	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0148273_46	PF04860,MF_04120,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0148273_47	K06904	151.9	5.60519e-45	N/A	N/A
PHROG	UHGV-0148273_47	phrog_80	178.4	0	head maturation protease	head and packaging
UniRef90	UHGV-0148273_47	UniRef90_A0A1Y4LTW2	373.0	0	Phage prohead protease	N/A
eggNOG-mapper	UHGV-0148273_47	398512.JQKC01000009_gene450	251.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0148273_47	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0148273_47	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0148273_47	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0148273_47	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0148273_48	phrog_10	174.4	0	major head protein	head and packaging
UniRef90	UHGV-0148273_48	UniRef90_A0A1Y4LTW7	939.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0148273_48	999413.HMPREF1094_02008	443.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0148273_48	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0148273_48	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0148273_48	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0148273_48	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0148273_49	phrog_2550	66.8	2.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-0148273_49	1232446.BAIE02000002_gene827	99.4	3.56e-26	N/A	N/A
structural_annotation	UHGV-0148273_49	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0148273_50	phrog_19734	88.1	1.1e-25	N/A	unknown function
UniRef90	UHGV-0148273_50	UniRef90_A0A3E3E563	142.0	1.32997e-41	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0148273_50	1232446.BAIE02000002_gene828	99.8	1.17e-25	N/A	N/A
structural_annotation	UHGV-0148273_50	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0148273_51	phrog_78	53.1	0.0000000000000069	tail terminator	connector
eggNOG-mapper	UHGV-0148273_51	1232446.BAIE02000002_gene829	94.0	1.8e-23	N/A	N/A
structural_annotation	UHGV-0148273_51	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0148273_52	UniRef90_A0A1C6FG30	82.4	7.03e-17	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0148273_52	1232446.BAIE02000002_gene830	100.0	1.01e-24	N/A	N/A
structural_annotation	UHGV-0148273_52	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0148273_53	phrog_88	77.3	1.8e-22	major tail protein	tail
UniRef90	UHGV-0148273_53	UniRef90_A0A3E3E439	224.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0148273_53	33035.JPJF01000039_gene278	125.0	2.94e-33	N/A	N/A
structural_annotation	UHGV-0148273_53	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0148273_55	phrog_23464	205.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0148273_55	33035.JPJF01000023_gene3232	291.0	0	phage tail tape measure protein	N/A
COG	UHGV-0148273_55	COG5412	N/A	N/A	Phage-related protein	N/A
UniRef90	UHGV-0148273_56	UniRef90_A0A3E3E586	283.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0148273_56	1232446.BAIE02000002_gene835	200.0	0	phage tail	N/A
NCBIFam	UHGV-0148273_56	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0148273_56	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0148273_56	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0148273_57	phrog_1067	303.1	0	minor head protein	head and packaging
UniRef90	UHGV-0148273_57	UniRef90_A0A1Y4LTX2	882.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0148273_57	1232446.BAIE02000002_gene836	521.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0148273_57	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0148273_57	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0148273_57	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0148273_57	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0148273_58	phrog_8781	51.1	0.000000000000029	endolysin	lysis
UniRef90	UHGV-0148273_58	UniRef90_A0A4V0ET45	105.0	4.87e-25	Phage lysin, N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0148273_58	552396.HMPREF0863_01651	99.4	1.78e-23	lysozyme activity	N/A
COG	UHGV-0148273_58	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0148273_58	PF05382,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0148273_60	phrog_19695	56.3	8.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-0148273_60	411462.DORLON_00772	80.1	3.32e-18	N/A	N/A
structural_annotation	UHGV-0148273_60	PF19714	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0148273_61	1232452.BAIB02000007_gene1610	162.0	0	N/A	N/A
structural_annotation	UHGV-0148273_61	PF10651	N/A	N/A	N/A	N/A
KOfam	UHGV-0148273_62	K16628	60.1	9.7e-18	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0148273_62	phrog_819	94.7	7.2e-28	tail protein	tail
UniRef90	UHGV-0148273_62	UniRef90_A0A3E3E4F9	162.0	0	Collagen-like protein	N/A
Pfam	UHGV-0148273_62	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
KOfam	UHGV-0148273_63	K19721	57.8	5.1e-17	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0148273_63	phrog_5073	60.3	3.1e-18	tail fiber protein	tail
UniRef90	UHGV-0148273_63	UniRef90_UPI001431967E	89.4	1.73e-18	collagen-like protein	N/A
Pfam	UHGV-0148273_63	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
PHROG	UHGV-0148273_64	phrog_24267	84.0	2.5e-24	N/A	unknown function
UniRef90	UHGV-0148273_64	UniRef90_R5HGH3	70.5	0.00000000000423	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-0148273_64	1141137.K4F7V9_9CAUD	82.8	5.53e-17	N-acetylmuramoyl-L-alanine amidase activity	N/A
structural_annotation	UHGV-0148273_64	COG4675	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0148273	Yes	36,744	36	100	1
UHGV-1375066	No	36,744	36	100	1
UHGV-1375067	No	36,744	36	100	1