vOTU vOTU-057684

vOTU: vOTU-057684

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-057684
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00062 → vSUBFAM-00170 → vGENUS-00088 → vSUBGEN-28081 → vOTU-057684
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1375635
Biosample ID	SAMN02334142
Genome length (bp)	44,638 bps
CheckV completeness	100.00% (Complete)
CDS count	73
CDS density	88.47%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella	Total connections	258	Host agreement	98.45
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella porci	Total connections	55	Host agreement	80

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1375635_2	K07451	54.0	0.0000000000000026	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1375635_2	phrog_1271	75.5	1.2e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1375635_2	UniRef90_A0A7M1RVR2	85.9	2.96e-18	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-1375635_2	561231.Pecwa_1765	54.3	0.00000115	HNH endonuclease	N/A
Pfam	UHGV-1375635_2	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1375635_2	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-1375635_5	UniRef90_R6T064	80.1	0.00000000000000557	NUMOD4 domain-containing protein	N/A
structural_annotation	UHGV-1375635_5	PF13392,PF07453	N/A	N/A	N/A	N/A
KOfam	UHGV-1375635_6	K02315	121.6	8.9e-36	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1375635_6	phrog_50	108.5	7.6e-32	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1375635_6	UniRef90_A0A395WER8	538.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-1375635_6	1211844.CBLM010000016_gene1509	135.0	8.76e-36	N/A	N/A
Pfam	UHGV-1375635_6	PF00308	N/A	N/A	Bacterial dnaA protein	Bac_DnaA
COG	UHGV-1375635_6	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1375635_6	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1375635_7	phrog_428	142.7	2.90069e-42	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1375635_7	UniRef90_A0A395WBX6	412.0	0	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1375635_7	279808.SH2379	152.0	2.68068e-42	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-1375635_7	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-1375635_7	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-1375635_7	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1375635_7	PF09524,PF08679,MF_01909,TIGR02220,NF040939,COG1675	N/A	N/A	N/A	N/A
KOfam	UHGV-1375635_11	K04763	134.0	1.7e-39	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-1375635_11	phrog_1	115.6	5.4e-34	integrase	integration and excision
UniRef90	UHGV-1375635_11	UniRef90_A0A395W9T7	580.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1375635_11	908340.HMPREF9406_2589	224.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1375635_11	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1375635_11	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1375635_11	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1375635_14	UniRef90_UPI001D14AAA4	71.6	0.0000000000000274	N/A	N/A
UniRef90	UHGV-1375635_17	UniRef90_UPI000E4DF961	79.7	1.24e-18	ribbon-helix-helix domain-containing protein	N/A
Pfam	UHGV-1375635_17	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-1375635_17	PF01402,NF041793,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-1375635_19	K18830	60.3	3e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1375635_19	phrog_8	45.7	0.00000000000082	transcriptional regulator	transcription regulation
UniRef90	UHGV-1375635_19	UniRef90_A0A395WA05	259.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1375635_19	999413.HMPREF1094_02045	96.7	6.1e-24	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1375635_19	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1375635_19	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1375635_19	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1375635_20	phrog_4980	126.9	1.5e-37	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-1375635_20	658086.HMPREF0994_06731	87.4	1.22e-16	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-1375635_20	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-1375635_20	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-1375635_20	PF18933,PF02631,MF_02248,MF_01114,NF008627,NF001062,COG5435,COG2137	N/A	N/A	N/A	N/A
UniRef90	UHGV-1375635_23	UniRef90_A0A413CSC4	235.0	0	PBECR3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1375635_23	796940.HMPREF9628_02206	65.5	0.00000000000476	N/A	N/A
Pfam	UHGV-1375635_23	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
structural_annotation	UHGV-1375635_23	PF18812,COG2929	N/A	N/A	N/A	N/A
KOfam	UHGV-1375635_24	K14059	198.0	0	int; integrase	N/A
PHROG	UHGV-1375635_24	phrog_1	177.5	0	integrase	integration and excision
UniRef90	UHGV-1375635_24	UniRef90_A0A395WBW7	741.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1375635_24	1235796.C815_00955	299.0	0	DNA integration	N/A
Pfam	UHGV-1375635_24	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-1375635_24	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1375635_24	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1375635_24	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1375635_25	K01447	61.3	1.9e-17	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1375635_25	phrog_7698	151.5	7.00649e-45	endolysin	lysis
UniRef90	UHGV-1375635_25	UniRef90_UPI001D0AA402	545.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1375635_25	1125712.HMPREF1316_2631	145.0	2.41e-40	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1375635_25	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-1375635_25	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-1375635_25	COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-1375635_27	phrog_443	52.4	0.000000000000015	holin	lysis
UniRef90	UHGV-1375635_27	UniRef90_A0A2U2ELA1	78.2	1.3e-17	Membrane protein	N/A
eggNOG-mapper	UHGV-1375635_27	476272.RUMHYD_01759	84.0	1.55e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1375635_27	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1375635_27	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-1375635_29	phrog_20016	67.1	2e-19	N/A	unknown function
UniRef90	UHGV-1375635_29	UniRef90_A0A395WF88	264.0	0	BclA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1375635_29	1226322.HMPREF1545_00077	62.0	0.000000000297	N/A	N/A
Pfam	UHGV-1375635_29	PF18573	N/A	N/A	BclA C-terminal domain	BclA_C
structural_annotation	UHGV-1375635_29	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-1375635_30	UniRef90_A0A8F0WFQ8	70.1	0.0000000000748	Outer capsid protein/viral fiber	N/A
eggNOG-mapper	UHGV-1375635_30	476272.RUMHYD_01770	114.0	8.99e-29	N/A	N/A
eggNOG-mapper	UHGV-1375635_35	349123.Lreu23DRAFT_3172	70.5	0.00000000179	N/A	N/A
structural_annotation	UHGV-1375635_36	PF16407,TIGR02657,COG3794	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1375635_37	PF05895,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1375635_38	PF10651,COG5513	N/A	N/A	N/A	N/A
PHROG	UHGV-1375635_39	phrog_1067	50.7	1.1e-22	minor head protein	head and packaging
Pfam	UHGV-1375635_39	PF14200	N/A	N/A	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
NCBIFam	UHGV-1375635_39	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1375635_39	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1375635_39	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1375635_40	phrog_33	52.8	0.00000000000001	distal tail protein Dit	tail
UniRef90	UHGV-1375635_40	UniRef90_A0A1C6JHE5	63.2	0.00000003	Phage-related protein	N/A
Pfam	UHGV-1375635_40	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-1375635_40	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1375635_40	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1375635_40	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-1375635_41	K10352	45.1	0.00000000000021	MYH9s; myosin heavy chain 9/10/11/14	N/A
PHROG	UHGV-1375635_41	phrog_13339	334.4	0	tail length tape measure protein	tail
UniRef90	UHGV-1375635_41	UniRef90_A0A395WD11	1961.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-1375635_41	1314.HKU360_01215	249.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-1375635_41	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1375635_41	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1375635_41	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1375635_41	PF10145,TIGR01760,TIGR02971,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-1375635_42	phrog_709	44.5	0.0000000000022	N/A	unknown function
structural_annotation	UHGV-1375635_42	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1375635_43	phrog_88	143.9	8.00141e-43	major tail protein	tail
UniRef90	UHGV-1375635_43	UniRef90_A0A395WA58	390.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1375635_43	1111134.HMPREF1253_0377	155.0	2.8026e-45	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-1375635_43	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-1375635_43	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-1375635_44	UniRef90_A0A374RUJ8	144.0	1.24001e-41	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1375635_44	86416.Clopa_0344	62.0	0.000000000212	N/A	N/A
Pfam	UHGV-1375635_44	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1375635_44	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1375635_45	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
PHROG	UHGV-1375635_46	phrog_1951	73.4	2.2e-21	head-tail adaptor	connector
UniRef90	UHGV-1375635_46	UniRef90_A0A395WC07	226.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-1375635_46	588581.Cpap_1270	60.5	0.000000000264	N/A	N/A
NCBIFam	UHGV-1375635_46	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-1375635_46	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1375635_47	phrog_5223	51.7	0.000000000000012	neck protein	connector
UniRef90	UHGV-1375635_47	UniRef90_A0A374RXD1	82.0	2.19e-18	DNA-packaging protein	N/A
structural_annotation	UHGV-1375635_47	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1375635_48	phrog_10	81.3	1.4e-23	major head protein	head and packaging
UniRef90	UHGV-1375635_48	UniRef90_A0A395WF70	799.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1375635_48	1536774.H70357_10630	165.0	1.28919e-43	Phage capsid family	N/A
Pfam	UHGV-1375635_48	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1375635_48	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1375635_48	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1375635_48	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1375635_49	K06904	88.5	9.4e-26	N/A	N/A
PHROG	UHGV-1375635_49	phrog_80	119.5	4.4e-35	head maturation protease	head and packaging
UniRef90	UHGV-1375635_49	UniRef90_A0A413UET6	346.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-1375635_49	411470.RUMGNA_02064	174.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-1375635_49	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-1375635_49	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-1375635_49	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-1375635_49	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-1375635_50	phrog_12	102.2	3.9e-30	portal protein	head and packaging
UniRef90	UHGV-1375635_50	UniRef90_A0A395W9X2	822.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1375635_50	1203606.HMPREF1526_01337	286.0	0	Portal protein	N/A
Pfam	UHGV-1375635_50	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1375635_50	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1375635_50	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1375635_51	phrog_9	308.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-1375635_51	UniRef90_A0A395WD03	1124.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1375635_51	742740.HMPREF9474_04307	549.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-1375635_51	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1375635_51	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1375635_51	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1375635_51	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1375635_52	phrog_361	74.5	1.2e-21	terminase small subunit	head and packaging
UniRef90	UHGV-1375635_52	UniRef90_A0A1C6H6I9	80.1	6.43e-17	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1375635_52	1329516.JPST01000017_gene431	50.1	0.00000474	Phage terminase, small subunit	N/A
Pfam	UHGV-1375635_52	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-1375635_52	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1375635_52	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-1375635_53	phrog_119	59.2	7.1e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1375635_53	UniRef90_A0A395WA48	265.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1375635_53	1211814.CAPG01000074_gene3460	67.0	0.000000000000955	HNH endonuclease	N/A
Pfam	UHGV-1375635_53	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1375635_53	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1375635_54	PF13560,TIGR02612,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1375635_63	phrog_4525	66.0	6.9e-19	N/A	unknown function
PHROG	UHGV-1375635_64	phrog_2316	40.8	0.000000000038	N/A	unknown function
UniRef90	UHGV-1375635_64	UniRef90_A0A3E4YBW5	124.0	2.99e-35	N/A	N/A
eggNOG-mapper	UHGV-1375635_64	1280676.AUJO01000024_gene3262	65.5	0.00000000000106	N/A	N/A
structural_annotation	UHGV-1375635_64	PF16475,MF_00436,NF033216	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1375635_65	PF10879	N/A	N/A	N/A	N/A
UniRef90	UHGV-1375635_67	UniRef90_A0A413UEX6	286.0	0	N/A	N/A
structural_annotation	UHGV-1375635_67	PF07374,NF008895	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1375635_70	PF11061	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1375635	Yes	44,638	33	100	1
UHGV-1445714	No	44,728	33	100	1
UHGV-0048576	No	29,171	33	65	1
UHGV-1441791	No	29,171	33	65	1
UHGV-0131790	No	13,334	34	30	1