vOTU vOTU-058032

vOTU: vOTU-058032

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-058032
Number of genomes	1
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-06098 → vGENUS-14705 → vSUBGEN-24989 → vOTU-058032
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales
Host range breadth	Order
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-1379735
Biosample ID	SAMN02333937
Genome length (bp)	42,787 bps
CheckV completeness	100.00% (Complete)
CDS count	54
CDS density	96.55%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales	Total connections	18	Host agreement	94.44
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1379735_1	phrog_12105	98.4	1.7e-29	N/A	unknown function
eggNOG-mapper	UHGV-1379735_1	1519439.JPJG01000060_gene1891	71.2	0.0000000000000262	N/A	N/A
PHROG	UHGV-1379735_2	phrog_511	220.8	0	internal virion protein	head and packaging
UniRef90	UHGV-1379735_2	UniRef90_A0A8D9UH72	347.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-1379735_2	1519439.JPJG01000060_gene1903	357.0	0	N/A	N/A
structural_annotation	UHGV-1379735_2	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1379735_4	1226322.HMPREF1545_00786	125.0	2.07e-28	N/A	N/A
KOfam	UHGV-1379735_5	K03427	61.6	1.3e-17	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-1379735_5	phrog_10089	1489.2	0	DarB-like antirestriction	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1379735_5	UniRef90_A0A3D1LAM6	2586.0	0	Helicase ATP-binding domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-1379735_5	1168281.I3PUW5_9CAUD	1094.0	0	N-acetylmuramoyl-L-alanine amidase activity	N/A
Pfam	UHGV-1379735_5	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-1379735_5	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
KOfam	UHGV-1379735_6	K06400	267.3	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1379735_6	phrog_95	291.6	0	integrase	integration and excision
UniRef90	UHGV-1379735_6	UniRef90_UPI00156F85ED	275.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-1379735_6	411470.RUMGNA_02175	274.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1379735_6	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1379735_6	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1379735_6	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1379735_6	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1379735_7	UniRef90_UPI00104E1191	54.7	0.00000162	peptidoglycan-binding protein	N/A
eggNOG-mapper	UHGV-1379735_7	1163671.JAGI01000002_gene1685	60.8	0.00000000299	Flagellar rod assembly protein muramidase FlgJ	N/A
NCBIFam	UHGV-1379735_7	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-1379735_7	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-1379735_9	phrog_8	51.1	0.000000000000034	transcriptional regulator	transcription regulation
UniRef90	UHGV-1379735_9	UniRef90_A0A855A1Q3	106.0	1.31e-27	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1379735_9	428125.CLOLEP_02738	100.0	5.42e-26	SMART helix-turn-helix domain protein	N/A
Pfam	UHGV-1379735_9	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1379735_9	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-1379735_10	UniRef90_A0A8J6LYY0	73.2	0.00000000000000159	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1379735_10	428125.CLOLEP_02737	63.2	0.00000000000259	N/A	N/A
PHROG	UHGV-1379735_12	phrog_16304	56.2	5.5e-16	N/A	unknown function
UniRef90	UHGV-1379735_12	UniRef90_UPI001E36D421	103.0	2.34e-24	N/A	N/A
eggNOG-mapper	UHGV-1379735_12	1139219.I569_00067	100.0	4.8e-23	DnaD domain protein	N/A
Pfam	UHGV-1379735_12	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1379735_12	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1379735_12	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1379735_13	K02315	120.6	1.6e-35	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1379735_13	phrog_50	109.3	4e-32	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1379735_13	UniRef90_A0A4Z0Y679	234.0	0	DNA replication protein DnaC	N/A
eggNOG-mapper	UHGV-1379735_13	445972.ANACOL_01829	188.0	0	N/A	N/A
Pfam	UHGV-1379735_13	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1379735_13	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1379735_13	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1379735_16	PF12844,MF_00535,NF041951,COG5499	N/A	N/A	N/A	N/A
PHROG	UHGV-1379735_19	phrog_7838	137.6	8.99998e-41	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1379735_19	UniRef90_A0A8D9UGW3	210.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-1379735_19	742767.HMPREF9456_02397	176.0	0	N/A	N/A
structural_annotation	UHGV-1379735_19	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-1379735_20	phrog_398	175.0	0	N/A	unknown function
UniRef90	UHGV-1379735_20	UniRef90_UPI00137B6F1E	347.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-1379735_20	1485543.JMME01000021_gene802	173.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-1379735_20	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-1379735_20	PF16784	N/A	N/A	N/A	N/A
UniRef90	UHGV-1379735_21	UniRef90_A0A847W0Y2	90.1	1.31e-21	HTH domain-containing protein	N/A
structural_annotation	UHGV-1379735_21	PF21715,TIGR00122,COG1654	N/A	N/A	N/A	N/A
KOfam	UHGV-1379735_22	K01160	71.9	1.5e-20	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1379735_22	phrog_34	79.0	6.5e-23	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1379735_22	UniRef90_UPI0006D84EB7	144.0	1.70958e-42	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1379735_22	477974.Daud_0813	55.8	0.0000000851	N/A	N/A
Pfam	UHGV-1379735_22	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
structural_annotation	UHGV-1379735_22	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
UniRef90	UHGV-1379735_23	UniRef90_A0A098GES5	98.2	1.31e-24	Putative phage associated protein	N/A
structural_annotation	UHGV-1379735_23	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
KOfam	UHGV-1379735_25	K03111	99.9	4.4e-29	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1379735_25	phrog_44	104.2	1.6e-30	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1379735_25	UniRef90_A0A2U1BEJ1	129.0	5.23e-36	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1379735_25	693746.OBV_19910	105.0	3.74e-27	Single-strand binding protein family	N/A
Pfam	UHGV-1379735_25	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1379735_25	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1379735_25	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1379735_25	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1379735_25	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1379735_27	phrog_18716	193.7	0	N/A	unknown function
UniRef90	UHGV-1379735_27	UniRef90_R6RP50	209.0	0	N/A	N/A
eggNOG-mapper	UHGV-1379735_27	665959.HMPREF1013_00856	147.0	2.66247e-44	N/A	N/A
Pfam	UHGV-1379735_27	PF18909	N/A	N/A	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
structural_annotation	UHGV-1379735_27	PF18909	N/A	N/A	N/A	N/A
KOfam	UHGV-1379735_28	K07729	53.3	0.0000000000000033	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1379735_28	phrog_8	51.0	0.000000000000035	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1379735_28	1449126.JQKL01000002_gene1543	53.1	0.00000255	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-1379735_28	retron_type_VI_hth_cluster2_1	41.5	0.000000000033	N/A	Retron
Pfam	UHGV-1379735_28	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1379735_28	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1379735_28	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1379735_30	PF18300,MF_01549,NF007981	N/A	N/A	N/A	N/A
PHROG	UHGV-1379735_31	phrog_924	45.8	0.0000000000011	N/A	unknown function
UniRef90	UHGV-1379735_31	UniRef90_UPI001F060261	54.7	0.000000251	N/A	N/A
Pfam	UHGV-1379735_31	PF04448	N/A	N/A	N/A	DUF551
COG	UHGV-1379735_31	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
eggNOG-mapper	UHGV-1379735_34	1280706.AUJE01000003_gene2269	67.0	0.000000000000025	N/A	N/A
KOfam	UHGV-1379735_38	K22299	47.5	0.00000000000041	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-1379735_38	phrog_8	47.8	0.00000000000032	transcriptional regulator	transcription regulation
UniRef90	UHGV-1379735_38	UniRef90_UPI00095219E9	82.4	2.45e-19	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1379735_38	663278.Ethha_1998	59.7	0.000000000972	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1379735_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1379735_38	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1379735_38	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1379735_40	K06909	124.7	8.9e-37	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1379735_40	phrog_979	155.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1379735_40	UniRef90_R5AXD9	663.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1379735_40	1410650.JHWL01000003_gene2834	559.0	0	N/A	N/A
Pfam	UHGV-1379735_40	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1379735_40	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1379735_40	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1379735_41	phrog_156	324.3	0	portal protein	head and packaging
UniRef90	UHGV-1379735_41	UniRef90_A0A8D9UH10	611.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1379735_41	748224.HMPREF9436_02547	513.0	0	N/A	N/A
structural_annotation	UHGV-1379735_41	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-1379735_42	K07584	61.0	2.3e-17	N/A	N/A
PHROG	UHGV-1379735_42	phrog_4478	58.0	1.3e-16	peptidase	other
UniRef90	UHGV-1379735_42	UniRef90_UPI001D021C93	68.6	0.00000000000068	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-1379735_42	1408823.AXUS01000003_gene559	55.8	0.0000000118	Cysteine protease Prp	N/A
Pfam	UHGV-1379735_42	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-1379735_42	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1379735_42	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1379735_43	phrog_13908	307.8	0	N/A	unknown function
UniRef90	UHGV-1379735_43	UniRef90_A0A174CZ20	108.0	6.25e-23	Predicted ribosomal protein	N/A
eggNOG-mapper	UHGV-1379735_43	748224.HMPREF9436_01398	82.4	0.0000000000000148	Cysteine protease Prp	N/A
COG	UHGV-1379735_43	COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1379735_44	phrog_1357	287.5	0	major head protein	head and packaging
UniRef90	UHGV-1379735_44	UniRef90_UPI000B8B3F29	427.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1379735_44	1203606.HMPREF1526_02746	366.0	0	N/A	N/A
Pfam	UHGV-1379735_44	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1379735_44	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1379735_44	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1379735_45	phrog_15239	87.2	2.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-1379735_45	1449126.JQKL01000003_gene1694	50.4	0.00000614	N/A	N/A
eggNOG-mapper	UHGV-1379735_47	476272.RUMHYD_00002	134.0	2.4e-29	N/A	N/A
structural_annotation	UHGV-1379735_47	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1379735_52	phrog_4105	43.6	0.0000000000052	N/A	unknown function
PHROG	UHGV-1379735_53	phrog_13256	68.3	7.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-1379735_53	1226322.HMPREF1545_00132	69.3	0.000000000000019	N/A	N/A
PHROG	UHGV-1379735_54	phrog_21357	143.3	6.09565e-43	endolysin	lysis
UniRef90	UHGV-1379735_54	UniRef90_G9YP37	231.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-1379735_54	97139.C824_00684	219.0	0	lysozyme activity	N/A
Pfam	UHGV-1379735_54	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-1379735_54	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1379735_54	PF00877,TIGR02594,COG0791	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1379735	Yes	42,787	56	100	1