vOTU vOTU-058384

vOTU: vOTU-058384

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-058384
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00239 → vGENUS-00650 → vSUBGEN-01908 → vOTU-058384
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1449257
Biosample ID	SAMN06164496
Genome length (bp)	28,142 bps
CheckV completeness	100.00% (Complete)
CDS count	43
CDS density	96.22%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	881	Host agreement	78.32
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	187	Host agreement	99.47

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1449257_1	phrog_18591	132.2	2.3e-39	N/A	unknown function
eggNOG-mapper	UHGV-1449257_1	272624.lpg2561	183.0	0	N/A	N/A
PHROG	UHGV-1449257_2	phrog_443	65.2	1.7e-18	holin	lysis
UniRef90	UHGV-1449257_2	UniRef90_R6R2Q3	91.7	5.03e-23	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1449257_2	626523.GCWU000342_01012	83.2	3.72e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-1449257_2	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-1449257_2	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-1449257_3	phrog_1863	70.3	2.1e-21	N/A	unknown function
UniRef90	UHGV-1449257_3	UniRef90_UPI001F223E8B	103.0	2.53e-27	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-1449257_3	1226322.HMPREF1545_04027	74.7	1.09e-16	N/A	N/A
UniRef90	UHGV-1449257_5	UniRef90_A0A374N9Y2	317.0	0	N/A	N/A
Pfam	UHGV-1449257_5	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-1449257_5	PF10651,PF08931,TIGR02268	N/A	N/A	N/A	N/A
PHROG	UHGV-1449257_6	phrog_1067	137.2	1.10001e-40	minor head protein	head and packaging
UniRef90	UHGV-1449257_6	UniRef90_A0A348ZBV6	176.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1449257_6	1160721.RBI_I01574	129.0	1.11e-29	Prophage endopeptidase tail	N/A
Pfam	UHGV-1449257_6	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1449257_6	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1449257_6	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1449257_6	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
UniRef90	UHGV-1449257_7	UniRef90_A0A1G5CPA2	118.0	1.06e-28	Phage-related protein	N/A
eggNOG-mapper	UHGV-1449257_7	1246.JMEA01000006_gene51	75.1	0.00000000000027	phage tail	N/A
COG	UHGV-1449257_7	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1449257_7	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1449257_8	phrog_23464	255.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1449257_8	665950.HMPREF1025_02660	182.0	1.4013e-45	phage tail tape measure protein	N/A
COG	UHGV-1449257_8	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-1449257_8	COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1449257_10	phrog_1021	50.9	0.0000000000000012	N/A	unknown function
PHROG	UHGV-1449257_11	phrog_885	133.3	1.5e-39	major tail protein	tail
UniRef90	UHGV-1449257_11	UniRef90_A0A101Y2E4	159.0	1.26117e-44	Big_5 domain-containing protein	N/A
eggNOG-mapper	UHGV-1449257_11	1321814.HMPREF9089_00935	171.0	0	N/A	N/A
structural_annotation	UHGV-1449257_11	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1449257_12	PF12691	N/A	N/A	N/A	N/A
UniRef90	UHGV-1449257_13	UniRef90_UPI001A9B6FBF	157.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1449257_13	1414720.CBYM010000040_gene1650	129.0	1.8e-36	N/A	N/A
structural_annotation	UHGV-1449257_13	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-1449257_14	phrog_1951	93.1	1.7e-27	head-tail adaptor	connector
UniRef90	UHGV-1449257_14	UniRef90_A0A374MZF9	207.0	0	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-1449257_14	1414720.CBYM010000040_gene1649	66.6	0.000000000000704	head-tail adaptor	N/A
COG	UHGV-1449257_14	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-1449257_14	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1449257_15	phrog_5223	54.6	0.0000000000000013	neck protein	connector
UniRef90	UHGV-1449257_15	UniRef90_H6LCB7	50.1	0.00000618	Putative prophage LambdaBa04 DNA packaging protein	N/A
eggNOG-mapper	UHGV-1449257_15	931626.Awo_c31020	50.1	0.00000104	N/A	N/A
NCBIFam	UHGV-1449257_15	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-1449257_15	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1449257_16	phrog_10	149.5	2.94273e-44	major head protein	head and packaging
UniRef90	UHGV-1449257_16	UniRef90_A0A374N9V9	729.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1449257_16	1280689.AUJC01000011_gene1521	330.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-1449257_16	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1449257_16	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1449257_16	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1449257_16	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1449257_17	K01358	117.4	1.9e-34	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1449257_17	phrog_94	183.5	0	head maturation protease	head and packaging
UniRef90	UHGV-1449257_17	UniRef90_A0A374NBM3	404.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-1449257_17	1203606.HMPREF1526_00979	175.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-1449257_17	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1449257_17	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1449257_17	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1449257_18	phrog_12	180.0	0	portal protein	head and packaging
UniRef90	UHGV-1449257_18	UniRef90_A0A374NAE1	767.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1449257_18	626523.GCWU000342_01027	405.0	0	Portal protein	N/A
Pfam	UHGV-1449257_18	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1449257_18	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1449257_18	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1449257_19	phrog_9	397.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-1449257_19	UniRef90_A0A374NB45	984.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1449257_19	1235793.C809_01917	728.0	0	Phage Terminase	N/A
Pfam	UHGV-1449257_19	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1449257_19	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1449257_19	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1449257_19	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1449257_20	phrog_1066	117.3	7.1e-35	N/A	unknown function
UniRef90	UHGV-1449257_20	UniRef90_A0A0D0SQQ8	85.5	4.98e-19	N/A	N/A
eggNOG-mapper	UHGV-1449257_20	1203606.HMPREF1526_00982	104.0	1.89e-27	N/A	N/A
PHROG	UHGV-1449257_21	phrog_119	55.7	7e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1449257_21	UniRef90_A0A374N9T6	238.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1449257_21	1235793.C809_01915	120.0	3.6e-33	HNH endonuclease	N/A
COG	UHGV-1449257_21	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-1449257_22	UniRef90_A0A374MXG7	146.0	1.54143e-44	XRE family transcriptional regulator	N/A
Pfam	UHGV-1449257_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-1449257_25	phrog_25754	80.2	8.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-1449257_25	1196322.A370_02055	72.4	0.00000000000000482	N/A	N/A
structural_annotation	UHGV-1449257_25	PF06372,NF041655	N/A	N/A	N/A	N/A
UniRef90	UHGV-1449257_26	UniRef90_UPI000E4DC4DA	122.0	1.26e-32	helix-turn-helix domain-containing protein	N/A
KOfam	UHGV-1449257_28	K06919	103.3	2.3e-30	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-1449257_28	phrog_1829	837.8	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1449257_28	UniRef90_A0A2N0ULU7	1565.0	0	SF3 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-1449257_28	1410670.JHXF01000015_gene2274	875.0	0	Phage plasmid primase, P4 family	N/A
Pfam	UHGV-1449257_28	PF08706	N/A	N/A	D5 N terminal like	D5_N
Pfam	UHGV-1449257_28	PF19263	N/A	N/A	N/A	DUF5906
Pfam	UHGV-1449257_28	PF03288	N/A	N/A	Poxvirus D5 protein-like	Pox_D5
NCBIFam	UHGV-1449257_28	TIGR01613.1	N/A	N/A	phage/plasmid primase, P4 family	N/A
COG	UHGV-1449257_28	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-1449257_28	PF08706,PF05272,PF02257,MF_04000,NF011296,COG3378,COG4983	N/A	N/A	N/A	N/A
PHROG	UHGV-1449257_29	phrog_378	113.9	1.4e-33	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1449257_29	UniRef90_A0A374ND86	364.0	0	N/A	N/A
eggNOG-mapper	UHGV-1449257_29	1410670.JHXF01000015_gene2272	159.0	0	N/A	N/A
AcrCatalog	UHGV-1449257_29	cluster_1061	73.6	1.63e-18	NA	N/A
Pfam	UHGV-1449257_29	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-1449257_29	PF05037,NF004948	N/A	N/A	N/A	N/A
PHROG	UHGV-1449257_30	phrog_5702	74.7	4.2e-22	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1449257_30	UniRef90_A0A374N329	211.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1449257_30	1410670.JHXF01000015_gene2271	154.0	0	VRR_NUC	N/A
Pfam	UHGV-1449257_30	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1449257_30	PF01870,MF_00130,NF002581,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-1449257_31	K19789	320.7	0	radD; DNA repair protein RadD	N/A
PHROG	UHGV-1449257_31	phrog_16	279.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1449257_31	UniRef90_A0A374N1T8	910.0	0	Helicase	N/A
eggNOG-mapper	UHGV-1449257_31	1410670.JHXF01000015_gene2270	561.0	0	helicase	N/A
PADLOC	UHGV-1449257_31	mREase_IV_00005	108.7	2.1e-33	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-1449257_31	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-1449257_31	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-1449257_31	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-1449257_31	PF04851,PF00271,MF_01489,TIGR04095,COG1061	N/A	N/A	N/A	N/A
PHROG	UHGV-1449257_32	phrog_2872	250.4	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1449257_32	UniRef90_UPI001A9B3ECC	526.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-1449257_32	754027.HMPREF9554_00709	224.0	0	N/A	N/A
Pfam	UHGV-1449257_32	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-1449257_32	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-1449257_33	phrog_253	101.5	2.9e-31	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1449257_33	UniRef90_UPI0019171ADA	181.0	0	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-1449257_33	1027396.LMOSA_21290	57.8	0.0000000596	Siphovirus Gp157	N/A
Pfam	UHGV-1449257_33	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1449257_33	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1449257_34	phrog_15609	94.8	9.2e-28	N/A	unknown function
UniRef90	UHGV-1449257_34	UniRef90_A0A373SLQ6	159.0	8.89825e-43	N/A	N/A
eggNOG-mapper	UHGV-1449257_34	641112.ACOK01000073_gene2872	116.0	7.9e-28	N/A	N/A
structural_annotation	UHGV-1449257_34	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-1449257_35	phrog_8470	213.1	0	N/A	unknown function
UniRef90	UHGV-1449257_35	UniRef90_UPI0018E45158	135.0	8.59e-31	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1449257_35	641112.ACOK01000073_gene2870	115.0	4.13e-25	PcfJ-like protein	N/A
Pfam	UHGV-1449257_35	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1449257_35	PF14284	N/A	N/A	N/A	N/A
UniRef90	UHGV-1449257_38	UniRef90_A0A2N0ULT9	138.0	1.46996e-41	DNA binding domain, excisionase family	N/A
eggNOG-mapper	UHGV-1449257_38	1283300.ATXB01000001_gene1737	46.2	0.00000684	DNA excision	N/A
Pfam	UHGV-1449257_38	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-1449257_38	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-1449257_38	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-1449257_38	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1449257_42	phrog_8	60.5	3.9e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1449257_42	UniRef90_A0A2N0ULV0	158.0	0	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-1449257_42	445335.CBN_3090	56.6	0.00000000418	Helix-turn-helix domain	N/A
Pfam	UHGV-1449257_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1449257_42	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
Pfam	UHGV-1449257_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1449257_43	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1449257	Yes	28,142	42	100	1
UHGV-0291581	No	13,850	43	57	1
UHGV-1482721	No	12,497	43	51	1