vOTU vOTU-059056

vOTU: vOTU-059056

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-059056
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00074 → vSUBFAM-00670 → vGENUS-12779 → vSUBGEN-19816 → vOTU-059056
Host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → Borkfalkiaceae → Scatosoma → Scatosoma sp900552625
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1901138
Biosample ID	N/A
Genome length (bp)	34,365 bps
CheckV completeness	100.00% (Complete)
CDS count	54
CDS density	93.65%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → Borkfalkiaceae → Scatosoma → Scatosoma sp900552625	Total connections	1	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1901138_1	UniRef90_A0A8E8B590	89.7	1.35e-21	Antitoxin	N/A
eggNOG-mapper	UHGV-1901138_1	1125700.HMPREF9195_00851	62.0	0.0000000000177	Antitoxin component of a toxin-antitoxin (TA) module	N/A
Pfam	UHGV-1901138_1	PF02604	N/A	N/A	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
NCBIFam	UHGV-1901138_1	TIGR01552.1	N/A	N/A	type II toxin-antitoxin system prevent-host-death family antitoxin	N/A
COG	UHGV-1901138_1	COG2161	N/A	N/A	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	N/A
structural_annotation	UHGV-1901138_1	PF02604,TIGR01552,COG2161	N/A	N/A	N/A	N/A
UniRef90	UHGV-1901138_2	UniRef90_C9RFU9	58.9	0.0000000627	Putative Lj965 prophage protein	N/A
eggNOG-mapper	UHGV-1901138_2	198467.NP92_02665	73.6	0.0000000000000175	N/A	N/A
PHROG	UHGV-1901138_3	phrog_5059	156.2	0	N/A	unknown function
UniRef90	UHGV-1901138_3	UniRef90_UPI001C3B25A8	183.0	0	N/A	N/A
eggNOG-mapper	UHGV-1901138_3	861454.HMPREF9099_00329	164.0	0	N/A	N/A
Pfam	UHGV-1901138_3	PF08861	N/A	N/A	N/A	DUF1828
Pfam	UHGV-1901138_3	PF08862	N/A	N/A	N/A	DUF1829
structural_annotation	UHGV-1901138_3	PF08862,PF08861,MF_00722,COG3372	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1901138_5	PF10651	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1901138_7	PF14530,MF_01441,NF009990,COG0783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1901138_8	PF14564	N/A	N/A	N/A	N/A
PHROG	UHGV-1901138_13	phrog_4012	122.2	5.7e-36	N/A	unknown function
UniRef90	UHGV-1901138_13	UniRef90_A0A845QKH5	144.0	7.04e-40	RelA_SpoT domain-containing protein	N/A
eggNOG-mapper	UHGV-1901138_13	40041.SZO_18880	89.4	2.76e-19	Region found in RelA / SpoT proteins	N/A
Pfam	UHGV-1901138_13	PF04607	N/A	N/A	Region found in RelA / SpoT proteins	RelA_SpoT
structural_annotation	UHGV-1901138_13	PF04607,TIGR04562,COG2357	N/A	N/A	N/A	N/A
PHROG	UHGV-1901138_14	phrog_10390	138.9	4.19997e-41	N/A	unknown function
UniRef90	UHGV-1901138_14	UniRef90_R7LQK1	225.0	0	N/A	N/A
eggNOG-mapper	UHGV-1901138_14	365048.Q0H268_9CAUD	174.0	0	N/A	N/A
Pfam	UHGV-1901138_14	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
structural_annotation	UHGV-1901138_14	PF13274,PF20476,COG3600	N/A	N/A	N/A	N/A
KOfam	UHGV-1901138_15	K14059	175.9	0	int; integrase	N/A
PHROG	UHGV-1901138_15	phrog_1	180.9	0	integrase	integration and excision
UniRef90	UHGV-1901138_15	UniRef90_A0A353EXX9	223.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1901138_15	596330.HMPREF0628_1084	167.0	2.8026e-45	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1901138_15	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1901138_15	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1901138_15	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1901138_16	phrog_87	44.0	0.0000000000029	metallo-protease	other
eggNOG-mapper	UHGV-1901138_16	663278.Ethha_0520	61.6	0.000000000395	N/A	N/A
COG	UHGV-1901138_16	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1901138_16	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-1901138_17	K07729	65.4	1.3e-18	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-1901138_17	phrog_8	79.4	6.5e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-1901138_17	UniRef90_A0A845LJT1	91.7	2.1e-21	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1901138_17	1230341.MJ3_04274	90.5	9.47e-22	Transcriptional	N/A
Pfam	UHGV-1901138_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1901138_17	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1901138_17	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1901138_18	phrog_8	46.4	0.0000000000009	transcriptional regulator	transcription regulation
UniRef90	UHGV-1901138_18	UniRef90_F8X3R3	50.1	0.00000153	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1901138_18	742767.HMPREF9456_02872	50.1	0.000000257	Transcriptional regulator	N/A
Pfam	UHGV-1901138_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1901138_18	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
eggNOG-mapper	UHGV-1901138_20	1009370.ALO_02276	75.1	0.00000000000000272	N/A	N/A
KOfam	UHGV-1901138_22	K21919	69.0	6e-20	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-1901138_22	phrog_9562	100.0	3.7e-30	N/A	unknown function
UniRef90	UHGV-1901138_22	UniRef90_UPI001031ED10	163.0	0	pentapeptide repeat-containing protein	N/A
eggNOG-mapper	UHGV-1901138_22	1235799.C818_02570	132.0	1.48e-35	Pentapeptide repeats (9 copies)	N/A
Pfam	UHGV-1901138_22	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
Pfam	UHGV-1901138_22	PF19062	N/A	N/A	N/A	DUF5758
COG	UHGV-1901138_22	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1901138_22	PF19062,PF13599,NF000139	N/A	N/A	N/A	N/A
PHROG	UHGV-1901138_27	phrog_253	106.0	3.6e-31	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1901138_27	UniRef90_UPI001030DCF8	127.0	1.02e-34	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-1901138_27	748224.HMPREF9436_03356	122.0	3.78e-33	Siphovirus Gp157	N/A
Pfam	UHGV-1901138_27	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1901138_27	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-1901138_28	phrog_14970	205.5	0	N/A	unknown function
UniRef90	UHGV-1901138_28	UniRef90_UPI00123F00F5	154.0	1.10002e-42	Rad52/Rad22 family DNA repair protein	N/A
eggNOG-mapper	UHGV-1901138_28	642492.Clole_0944	144.0	1.22e-39	double-strand break repair protein	N/A
Pfam	UHGV-1901138_28	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-1901138_28	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-1901138_28	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1901138_29	phrog_398	179.1	0	N/A	unknown function
UniRef90	UHGV-1901138_29	UniRef90_UPI00137B6F1E	189.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-1901138_29	1485543.JMME01000021_gene802	182.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-1901138_29	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-1901138_29	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-1901138_30	phrog_16304	47.9	0.00000000000015	N/A	unknown function
Pfam	UHGV-1901138_30	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1901138_30	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1901138_31	K02315	150.6	1.26117e-44	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1901138_31	phrog_50	133.6	1.7e-39	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1901138_31	UniRef90_A0A497YP92	95.9	1.08e-19	Phage DNA replication protein (Predicted replicative helicase loader)	N/A
eggNOG-mapper	UHGV-1901138_31	1410625.JHWK01000005_gene1316	89.7	4.77e-18	IstB-like ATP binding protein	N/A
Pfam	UHGV-1901138_31	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1901138_31	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1901138_31	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1901138_32	phrog_4973	68.8	6.9e-20	N/A	unknown function
UniRef90	UHGV-1901138_32	UniRef90_UPI001D0904CC	70.9	0.0000000000000173	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1901138_32	880073.Calab_0752	60.5	0.0000000000316	Helix-turn-helix domain	N/A
Pfam	UHGV-1901138_32	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-1901138_32	PF14090,TIGR00373,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-1901138_33	phrog_757	214.3	0	DNA methyltransferase	other
UniRef90	UHGV-1901138_33	UniRef90_A0A516LQR9	237.0	0	Putative DNA (Cytosine-5)-methyltransferase	N/A
eggNOG-mapper	UHGV-1901138_33	1235790.C805_00032	284.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1901138_33	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1901138_33	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1901138_34	K01160	47.8	0.0000000000004	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1901138_34	phrog_140	105.8	4.1e-31	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1901138_34	UniRef90_A0A415L586	126.0	9.83e-35	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1901138_34	642492.Clole_2784	108.0	1.97e-28	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1901138_34	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1901138_34	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1901138_34	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1901138_35	phrog_3136	74.9	7.9e-22	N/A	unknown function
UniRef90	UHGV-1901138_35	UniRef90_UPI001C018CFA	53.5	0.00000864	ASCH domain-containing protein	N/A
structural_annotation	UHGV-1901138_35	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1901138_39	phrog_13999	78.3	5.8e-23	N/A	unknown function
eggNOG-mapper	UHGV-1901138_39	1391428.V5KT07_9CAUD	53.9	0.00000000737	N/A	N/A
structural_annotation	UHGV-1901138_41	PF11132	N/A	N/A	N/A	N/A
KOfam	UHGV-1901138_42	K03111	139.2	4.39994e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1901138_42	phrog_44	150.7	7.00649e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1901138_42	UniRef90_A0A316QG51	179.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1901138_42	1042163.BRLA_c031440	122.0	5.6e-34	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1901138_42	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1901138_42	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1901138_42	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1901138_42	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1901138_42	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1901138_43	PF05263,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1901138_44	phrog_2412	53.5	7.7e-17	N/A	unknown function
UniRef90	UHGV-1901138_44	UniRef90_UPI001E414EFE	62.4	0.000000000658	KGG domain-containing protein	N/A
eggNOG-mapper	UHGV-1901138_44	556268.OFAG_00320	78.6	4.61e-17	N/A	N/A
UniRef90	UHGV-1901138_45	UniRef90_G5K5L3	85.1	0.0000000000000379	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1901138_45	764299.STRIC_2129	85.1	0.00000000000000636	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-1901138_45	COG1783	N/A	N/A	Phage terminase large subunit	N/A
PHROG	UHGV-1901138_47	phrog_533	113.1	1.9e-33	portal protein	head and packaging
UniRef90	UHGV-1901138_47	UniRef90_A0A7X0VKL2	120.0	1.32e-25	Capsid protein	N/A
eggNOG-mapper	UHGV-1901138_47	1151292.QEW_4395	115.0	8.13e-25	N/A	N/A
structural_annotation	UHGV-1901138_47	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1901138_49	1507.HMPREF0262_01179	80.1	0.0000000000000389	N/A	N/A
structural_annotation	UHGV-1901138_49	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1901138_53	phrog_2248	52.2	1.2e-24	tail protein	tail
Pfam	UHGV-1901138_53	PF20934	N/A	N/A	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
structural_annotation	UHGV-1901138_53	PF20934,PF16838,PF09393,PF08873,TIGR02126,COG5437,COG5003	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1901138	Yes	34,365	44	100	1
UHGV-0051183	No	23,448	45	67	1
UHGV-1381409	No	23,448	45	67	1