vOTU vOTU-059513

vOTU: vOTU-059513

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-059513
Number of genomes	1
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Choladousia → Choladousia sp902363665
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-07370 → vGENUS-20316 → vSUBGEN-39926 → vOTU-059513
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0013785
Biosample ID	SAMEA4765816
Genome length (bp)	38,755 bps
CheckV completeness	93.95% (High-quality)
CDS count	51
CDS density	90.67%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	37	Host agreement	91.89
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Choladousia → Choladousia sp902363665	Total connections	6	Host agreement	83.33

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 93.95)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0013785_1	K01447	78.4	1.2e-22	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0013785_1	phrog_3513	97.2	1.5e-28	endolysin	lysis
UniRef90	UHGV-0013785_1	UniRef90_A0A3A9FK24	118.0	4.08e-25	LYZ2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0013785_1	658655.HMPREF0988_00104	122.0	1.39e-27	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0013785_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0013785_1	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-0013785_1	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-0013785_1	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0013785_1	PF01510,PF05036,MF_02039,NF008758,NF009357,TIGR00413,COG1705,COG5632,COG3147	N/A	N/A	N/A	N/A
PHROG	UHGV-0013785_2	phrog_18218	134.3	3.3e-40	N/A	unknown function
UniRef90	UHGV-0013785_2	UniRef90_UPI00093034BA	145.0	6.89439e-43	ribonuclease	N/A
eggNOG-mapper	UHGV-0013785_2	411459.RUMOBE_00910	150.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0013785_2	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0013785_3	phrog_937	73.4	3e-21	hemolysin	other
eggNOG-mapper	UHGV-0013785_3	478749.BRYFOR_07639	130.0	5.44e-38	N/A	N/A
structural_annotation	UHGV-0013785_4	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0013785_6	phrog_16164	190.0	0	N/A	unknown function
PHROG	UHGV-0013785_9	phrog_6616	530.8	0	tail protein	tail
UniRef90	UHGV-0013785_9	UniRef90_A0A395X7B3	760.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0013785_9	1121866.AUGK01000003_gene1439	248.0	0	Phage minor structural protein	N/A
COG	UHGV-0013785_9	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0013785_9	PF05113,PF18432,NF033848,NF011735,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0013785_10	phrog_1194	40.8	0.000000000034	N/A	unknown function
structural_annotation	UHGV-0013785_10	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0013785_11	phrog_1535	219.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0013785_11	UniRef90_A0A1C5N853	268.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0013785_11	411459.RUMOBE_01384	263.0	0	phage tail tape measure protein	N/A
COG	UHGV-0013785_11	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0013785_11	PF11172	N/A	N/A	N/A	N/A
PHROG	UHGV-0013785_12	phrog_706	105.7	2.3e-31	N/A	unknown function
UniRef90	UHGV-0013785_12	UniRef90_UPI001C0F2CC6	253.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0013785_12	411459.RUMOBE_01383	189.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0013785_12	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0013785_12	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0013785_13	phrog_11299	103.1	2.6e-30	N/A	unknown function
eggNOG-mapper	UHGV-0013785_13	33035.JPJF01000106_gene3125	82.8	2.54e-18	N/A	N/A
structural_annotation	UHGV-0013785_13	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0013785_14	phrog_3099	112.9	2.8e-33	N/A	unknown function
eggNOG-mapper	UHGV-0013785_14	33035.JPJF01000106_gene3126	191.0	0	N/A	N/A
structural_annotation	UHGV-0013785_14	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0013785_15	phrog_3266	106.6	1.5e-31	tail completion	connector
eggNOG-mapper	UHGV-0013785_15	663278.Ethha_0098	60.1	0.00000000192	N/A	N/A
structural_annotation	UHGV-0013785_15	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0013785_16	phrog_556	80.0	2e-23	minor head protein	head and packaging
UniRef90	UHGV-0013785_16	UniRef90_UPI00156EFCF3	207.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0013785_16	1449050.JNLE01000003_gene3886	74.7	0.00000000000000558	N/A	N/A
Pfam	UHGV-0013785_16	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0013785_16	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0013785_17	phrog_3366	98.3	6.8e-29	N/A	unknown function
Pfam	UHGV-0013785_17	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0013785_17	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0013785_18	phrog_541	89.4	3.1e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-0013785_18	1304866.K413DRAFT_3039	63.9	0.0000000000276	N/A	N/A
PHROG	UHGV-0013785_19	phrog_422	201.6	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0013785_19	411470.RUMGNA_02219	501.0	0	N/A	N/A
structural_annotation	UHGV-0013785_19	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0013785_20	phrog_194	115.0	7.1e-34	head scaffolding protein	head and packaging
UniRef90	UHGV-0013785_20	UniRef90_A5KPA4	264.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0013785_20	658655.HMPREF0988_02561	270.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0013785_20	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0013785_20	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0013785_21	phrog_419	102.6	4.7e-30	N/A	unknown function
eggNOG-mapper	UHGV-0013785_21	1499683.CCFF01000005_gene67	103.0	6.07e-28	N/A	N/A
structural_annotation	UHGV-0013785_21	PF14083	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0013785_22	411460.RUMTOR_01296	84.7	2.58e-21	N/A	N/A
PHROG	UHGV-0013785_23	phrog_581	309.6	0	minor head protein	head and packaging
UniRef90	UHGV-0013785_23	UniRef90_UPI00156EEEC1	734.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0013785_23	411461.DORFOR_01164	329.0	0	N/A	N/A
Pfam	UHGV-0013785_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0013785_23	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013785_23	PF06152,PF12636	N/A	N/A	N/A	N/A
PHROG	UHGV-0013785_24	phrog_533	328.5	0	portal protein	head and packaging
UniRef90	UHGV-0013785_24	UniRef90_A0A174B716	685.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0013785_24	658655.HMPREF0988_02564	680.0	0	N/A	N/A
structural_annotation	UHGV-0013785_24	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0013785_25	K06909	85.8	6e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0013785_25	phrog_2	86.6	4.5e-25	terminase large subunit	head and packaging
UniRef90	UHGV-0013785_25	UniRef90_F3BAE1	766.0	0	PBSX family phage terminase, large subunit	N/A
eggNOG-mapper	UHGV-0013785_25	742723.HMPREF9477_00911	766.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0013785_25	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0013785_25	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0013785_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0013785_25	PF04466,PF20441,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0013785_26	K07474	117.0	2.8e-34	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0013785_26	phrog_2606	332.3	0	terminase small subunit	head and packaging
UniRef90	UHGV-0013785_26	UniRef90_UPI001C10A749	373.0	0	terminase small subunit	N/A
eggNOG-mapper	UHGV-0013785_26	478749.BRYFOR_07604	304.0	0	terminase, small subunit	N/A
Pfam	UHGV-0013785_26	PF10668	N/A	N/A	Phage terminase small subunit	Phage_terminase
Pfam	UHGV-0013785_26	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0013785_26	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0013785_26	PF03592,PF10668,NF040601,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0013785_28	phrog_36	84.8	1.1e-24	transcriptional regulator	transcription regulation
UniRef90	UHGV-0013785_28	UniRef90_A0A416ZS25	152.0	1.54143e-44	N/A	N/A
eggNOG-mapper	UHGV-0013785_28	1123075.AUDP01000020_gene1515	104.0	9.71e-27	sigma factor activity	N/A
COG	UHGV-0013785_28	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0013785_28	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0013785_32	phrog_15077	103.8	1.3e-31	N/A	unknown function
UniRef90	UHGV-0013785_32	UniRef90_A5ZPN2	141.0	1.85e-34	N/A	N/A
eggNOG-mapper	UHGV-0013785_32	97139.C824_05986	270.0	0	N/A	N/A
structural_annotation	UHGV-0013785_32	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0013785_33	phrog_8470	368.0	0	N/A	unknown function
UniRef90	UHGV-0013785_33	UniRef90_UPI001D086F83	918.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0013785_33	1235792.C808_00066	1025.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0013785_33	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0013785_33	PF14284	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0013785_34	1235792.C808_00065	199.0	0	N/A	N/A
PHROG	UHGV-0013785_35	phrog_7566	119.0	1.4e-35	N/A	unknown function
eggNOG-mapper	UHGV-0013785_35	97139.C824_00037	113.0	8.13e-31	N/A	N/A
PHROG	UHGV-0013785_36	phrog_531	47.0	0.00000000000045	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0013785_36	UniRef90_A0A6N7SSB2	130.0	6.05e-36	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0013785_36	411461.DORFOR_01140	72.4	0.0000000000000339	RNA-DNA hybrid ribonuclease activity	N/A
Pfam	UHGV-0013785_36	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0013785_36	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0013785_36	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0013785_37	phrog_3584	164.7	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0013785_37	1280698.AUJS01000007_gene1013	360.0	0	N/A	N/A
structural_annotation	UHGV-0013785_37	PF21578,NF041486	N/A	N/A	N/A	N/A
Pfam	UHGV-0013785_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-0013785_41	phrog_6058	57.2	1.3e-16	N/A	unknown function
UniRef90	UHGV-0013785_41	UniRef90_A0A374E7W1	205.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0013785_41	742740.HMPREF9474_02381	152.0	1.4013e-45	N/A	N/A
Pfam	UHGV-0013785_41	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0013785_41	PF01381,PF12728,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0013785_43	NF037954	N/A	N/A	N/A	N/A
KOfam	UHGV-0013785_47	K18830	57.0	4.3e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0013785_47	phrog_8	47.7	0.00000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-0013785_47	UniRef90_A0A1Q6KU91	161.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0013785_47	411470.RUMGNA_00191	139.0	3.59994e-41	DNA-binding helix-turn-helix protein	N/A
Pfam	UHGV-0013785_47	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0013785_47	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0013785_47	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0013785_48	K18830	73.0	5.4e-21	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0013785_48	phrog_8	63.9	3.4e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0013785_48	UniRef90_A0A412EM95	159.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0013785_48	411470.RUMGNA_00191	137.0	2.15e-40	DNA-binding helix-turn-helix protein	N/A
PADLOC	UHGV-0013785_48	retron_type_VI_hth_cluster2_1	40.5	0.000000000038	N/A	Retron
Pfam	UHGV-0013785_48	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0013785_48	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0013785_48	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0013785_50	UniRef90_A0A8D9UIV6	52.0	0.00000057	RNAse domain protein	N/A
structural_annotation	UHGV-0013785_50	PF02701	N/A	N/A	N/A	N/A
KOfam	UHGV-0013785_51	K14059	267.5	0	int; integrase	N/A
PHROG	UHGV-0013785_51	phrog_1	236.6	0	integrase	integration and excision
UniRef90	UHGV-0013785_51	UniRef90_A0A1Y3TJA6	751.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0013785_51	1120998.AUFC01000030_gene2201	535.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0013785_51	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0013785_51	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0013785_51	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0013785_51	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0013785_51	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0013785	Yes	38,755	46	94	1