vOTU vOTU-059518

vOTU: vOTU-059518

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-059518
Number of genomes	8
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium sp018380115
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-02027 → vGENUS-03569 → vSUBGEN-03376 → vOTU-059518
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1930688
Biosample ID	N/A
Genome length (bp)	45,022 bps
CheckV completeness	99.90% (High-quality)
CDS count	68
CDS density	88.46%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium	Total connections	15	Host agreement	93.33
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium sp018380115	Total connections	7	Host agreement	71.43

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1930688_1	phrog_16490	280.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1930688_1	1226322.HMPREF1545_00076	226.0	0	N/A	N/A
PHROG	UHGV-1930688_2	phrog_22984	108.2	3.8e-32	N/A	unknown function
PHROG	UHGV-1930688_3	phrog_21718	73.1	4.6e-21	N/A	unknown function
PHROG	UHGV-1930688_4	phrog_3754	107.5	1.1e-31	N/A	unknown function
eggNOG-mapper	UHGV-1930688_4	476272.RUMHYD_01764	172.0	0	N/A	N/A
structural_annotation	UHGV-1930688_7	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1930688_9	871968.DESME_08840	323.0	0	N/A	N/A
UniRef90	UHGV-1930688_11	UniRef90_A0A353MSY5	72.0	0.0000000000000143	GNAT family acetyltransferase	N/A
eggNOG-mapper	UHGV-1930688_11	1163671.JAGI01000002_gene2691	76.6	3.64e-17	N/A	N/A
PHROG	UHGV-1930688_12	phrog_881	84.4	7.7e-25	holin	lysis
UniRef90	UHGV-1930688_12	UniRef90_UPI001D0692FC	89.7	3.75e-22	phage holin	N/A
eggNOG-mapper	UHGV-1930688_12	742740.HMPREF9474_02251	89.4	8.24e-23	Putative phage holin Dp-1	N/A
Pfam	UHGV-1930688_12	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1930688_12	PF16938	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1930688_13	33035.JPJF01000090_gene94	77.8	2.49e-17	N/A	N/A
KOfam	UHGV-1930688_14	K21472	67.0	3.5e-19	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	N/A
PHROG	UHGV-1930688_14	phrog_7767	41.1	0.000000000019	metallo-endopeptidase	other
UniRef90	UHGV-1930688_14	UniRef90_G9RZC7	266.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-1930688_14	665956.HMPREF1032_01628	266.0	0	N/A	N/A
Pfam	UHGV-1930688_14	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
structural_annotation	UHGV-1930688_14	PF21086,MF_01450,NF010999,COG3830	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1930688_17	665956.HMPREF1032_03918	81.6	0.0000000000000155	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
PHROG	UHGV-1930688_18	phrog_3287	152.3	2.8026e-45	virion structural protein	head and packaging
eggNOG-mapper	UHGV-1930688_18	665956.HMPREF1032_03917	735.0	0	N/A	N/A
structural_annotation	UHGV-1930688_18	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-1930688_19	phrog_13046	51.7	0.0000000000000086	N/A	unknown function
eggNOG-mapper	UHGV-1930688_19	1232449.BAHV02000016_gene1817	112.0	2.92e-28	N/A	N/A
structural_annotation	UHGV-1930688_19	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-1930688_20	phrog_371	135.4	3.3e-40	major head protein	head and packaging
UniRef90	UHGV-1930688_20	UniRef90_UPI001F183EB8	508.0	0	Mu-like prophage major head subunit gpT family protein	N/A
eggNOG-mapper	UHGV-1930688_20	1226322.HMPREF1545_03848	282.0	0	N/A	N/A
Pfam	UHGV-1930688_20	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-1930688_20	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1930688_21	phrog_24113	58.6	8.9e-17	N/A	unknown function
eggNOG-mapper	UHGV-1930688_21	1226322.HMPREF1545_03847	54.3	0.00000018	N/A	N/A
structural_annotation	UHGV-1930688_21	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-1930688_22	phrog_35275	82.2	6e-24	N/A	unknown function
eggNOG-mapper	UHGV-1930688_22	1226322.HMPREF1545_03846	75.1	0.00000000000116	N/A	N/A
PHROG	UHGV-1930688_25	phrog_156	209.9	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1930688_25	693746.OBV_23930	451.0	0	N/A	N/A
structural_annotation	UHGV-1930688_25	PF12236,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-1930688_26	K21523	44.7	0.00000000000068	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-1930688_26	phrog_2	101.7	1.2e-29	terminase large subunit	head and packaging
UniRef90	UHGV-1930688_26	UniRef90_UPI001F401ABC	693.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1930688_26	316274.Haur_1384	152.0	8.7e-38	N/A	N/A
Pfam	UHGV-1930688_26	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1930688_26	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-1930688_26	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-1930688_27	phrog_2412	58.4	7.1e-17	N/A	unknown function
eggNOG-mapper	UHGV-1930688_27	1122981.AUME01000026_gene531	50.8	0.00000704	N/A	N/A
UniRef90	UHGV-1930688_28	UniRef90_UPI0018758D33	61.2	0.000000000138	N/A	N/A
Pfam	UHGV-1930688_28	PF08681	N/A	N/A	N/A	DUF1778
PHROG	UHGV-1930688_30	phrog_25027	67.3	1.5e-19	N/A	unknown function
UniRef90	UHGV-1930688_30	UniRef90_A0A1Y3RPR4	160.0	0	ArdcN domain-containing protein	N/A
eggNOG-mapper	UHGV-1930688_30	1399942.U3PBI8_9CAUD	75.1	6.31e-16	N/A	N/A
structural_annotation	UHGV-1930688_30	PF08401	N/A	N/A	N/A	N/A
PHROG	UHGV-1930688_31	phrog_19458	322.3	0	primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1930688_31	UniRef90_A0A1V5KAU2	224.0	0	DarA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1930688_31	657322.FPR_26770	375.0	0	N/A	N/A
COG	UHGV-1930688_31	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
KOfam	UHGV-1930688_32	K22300	64.3	2.5e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1930688_32	phrog_8	56.2	5.2e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1930688_32	UniRef90_A0A174WNI4	100.0	6.29e-24	Transcriptional repressor DicA	N/A
eggNOG-mapper	UHGV-1930688_32	742738.HMPREF9460_00887	62.8	0.00000000045	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1930688_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1930688_32	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1930688_34	PF04545	N/A	N/A	N/A	N/A
PHROG	UHGV-1930688_35	phrog_2245	98.7	5.6e-29	nucleoside triphosphate pyrophosphohydrolase	other
eggNOG-mapper	UHGV-1930688_35	428125.CLOLEP_01814	107.0	5.66e-29	COG NOG14118 non supervised orthologous group	N/A
structural_annotation	UHGV-1930688_35	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1930688_36	411462.DORLON_00765	75.1	0.000000000000357	N/A	N/A
structural_annotation	UHGV-1930688_36	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1930688_37	665956.HMPREF1032_03084	52.0	0.000000231	N/A	N/A
eggNOG-mapper	UHGV-1930688_39	742738.HMPREF9460_04055	99.8	6.74e-26	N/A	N/A
KOfam	UHGV-1930688_42	K00571	108.6	7.5e-32	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1930688_42	phrog_67	89.3	5.4e-28	DNA methyltransferase	other
UniRef90	UHGV-1930688_42	UniRef90_UPI001E5430A5	454.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-1930688_42	411468.CLOSCI_00299	398.0	0	DNA methylase	N/A
PADLOC	UHGV-1930688_42	MTase_II_00157	86.6	9.6e-27	Type II methyltransferase	RM
Pfam	UHGV-1930688_42	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1930688_42	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1930688_42	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-1930688_44	K01160	57.9	3.1e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1930688_44	phrog_34	72.3	8.3e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1930688_44	UniRef90_UPI0006D84EB7	165.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
COG	UHGV-1930688_44	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1930688_44	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1930688_45	K02314	254.0	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1930688_45	phrog_19	252.3	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1930688_45	UniRef90_A0A0W7TNB4	529.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-1930688_45	665956.HMPREF1032_02618	491.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1930688_45	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1930688_45	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1930688_45	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1930688_45	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1930688_46	phrog_2514	82.0	7.6e-24	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1930688_46	UniRef90_UPI001EE2C20A	102.0	7.54e-24	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1930688_46	665956.HMPREF1032_02617	260.0	0	Phage replisome organizer, N-terminal domain protein	N/A
COG	UHGV-1930688_46	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1930688_46	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-1930688_47	K03111	133.9	1.9e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1930688_47	phrog_44	135.2	4.39999e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1930688_47	UniRef90_A0A316PHP0	200.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1930688_47	665956.HMPREF1032_00430	194.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1930688_47	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1930688_47	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1930688_47	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1930688_47	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1930688_47	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1930688_48	phrog_7566	87.3	1.1e-25	N/A	unknown function
UniRef90	UHGV-1930688_48	UniRef90_UPI001C1E3E38	54.3	0.000000307	phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-1930688_48	693746.OBV_25470	119.0	2.3e-33	N/A	N/A
PHROG	UHGV-1930688_49	phrog_72	62.0	3.1e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1930688_49	UniRef90_A0A8D9PDS2	116.0	5.3e-30	NinB protein	N/A
eggNOG-mapper	UHGV-1930688_49	445972.ANACOL_01825	134.0	9.43e-38	N/A	N/A
Pfam	UHGV-1930688_49	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-1930688_49	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1930688_50	phrog_659	191.4	0	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1930688_50	UniRef90_UPI0009E55993	282.0	0	N/A	N/A
eggNOG-mapper	UHGV-1930688_50	1507.HMPREF0262_00431	225.0	0	N/A	N/A
Pfam	UHGV-1930688_50	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-1930688_50	PF06378,COG4712	N/A	N/A	N/A	N/A
UniRef90	UHGV-1930688_52	UniRef90_UPI00164CB55F	58.9	0.000000000484	DNA gyrase	N/A
eggNOG-mapper	UHGV-1930688_56	445972.ANACOL_01800	48.5	0.00000132	N/A	N/A
Pfam	UHGV-1930688_56	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-1930688_56	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1930688_56	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1930688_59	PF10743,NF033787	N/A	N/A	N/A	N/A
UniRef90	UHGV-1930688_60	UniRef90_UPI001956DCC9	81.6	3.74e-19	helix-turn-helix transcriptional regulator	N/A
structural_annotation	UHGV-1930688_60	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1930688_61	phrog_8	59.8	6.6e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1930688_61	UniRef90_A0A136Q8I6	98.6	3.01e-24	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1930688_61	1507.HMPREF0262_00424	67.4	0.00000000000085	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1930688_61	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1930688_61	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1930688_61	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1930688_62	phrog_20886	40.7	0.000000000028	N/A	unknown function
UniRef90	UHGV-1930688_62	UniRef90_A0A357WUS8	79.0	1.26e-17	Peptidase_M78 domain-containing protein	N/A
structural_annotation	UHGV-1930688_62	PF06114	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1930688_63	1487921.DP68_06980	57.8	0.000000215	N/A	N/A
UniRef90	UHGV-1930688_64	UniRef90_UPI00096A9788	73.2	0.000000000000705	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1930688_64	1231377.C426_0586	60.5	0.0000000062	Peptidase S24-like	N/A
Pfam	UHGV-1930688_64	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-1930688_64	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
PHROG	UHGV-1930688_65	phrog_33519	126.2	2e-37	N/A	unknown function
eggNOG-mapper	UHGV-1930688_65	1507.HMPREF0262_01197	137.0	1.67e-39	N/A	N/A
structural_annotation	UHGV-1930688_65	PF13958,NF010262,COG2337	N/A	N/A	N/A	N/A
KOfam	UHGV-1930688_66	K14059	92.1	1e-26	int; integrase	N/A
PHROG	UHGV-1930688_66	phrog_1	98.7	7.7e-29	integrase	integration and excision
UniRef90	UHGV-1930688_66	UniRef90_UPI0011AF8E34	264.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1930688_66	445972.ANACOL_01797	203.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1930688_66	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1930688_66	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1930688_66	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-1930688_67	phrog_28802	57.1	7.9e-17	N/A	unknown function
PHROG	UHGV-1930688_68	phrog_20016	193.1	0	N/A	unknown function
UniRef90	UHGV-1930688_68	UniRef90_A0A285PT46	193.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1930688_68	1226322.HMPREF1545_00077	169.0	0	N/A	N/A
structural_annotation	UHGV-1930688_68	PF18573,NF033147	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1930688	Yes	45,022	51	100	1
UHGV-0774102	No	45,008	51	100	1
UHGV-2215903	No	15,195	52	35	1
UHGV-2220676	No	13,216	49	31	1
UHGV-0078520	No	12,234	52	28	1
UHGV-0800580	No	11,715	52	27	1
UHGV-2225767	No	11,620	52	26	1
UHGV-0436478	No	11,374	48	26	1